Strain Fitness in Rahnella sp. WP5 around EX31_RS23065

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23060 and EX31_RS23065 are separated by 46 nucleotidesEX31_RS23065 and EX31_RS23070 are separated by 199 nucleotides EX31_RS23060: EX31_RS23060 - nitrate ABC transporter substrate-binding protein, at 374,241 to 375,197 _RS23060 EX31_RS23065: EX31_RS23065 - deaminated glutathione amidase, at 375,244 to 376,038 _RS23065 EX31_RS23070: EX31_RS23070 - ABC transporter substrate-binding protein, at 376,238 to 377,146 _RS23070 Position (kb) 375 376 377Strain fitness (log2 ratio) -3 -2 -1 0 1at 374.249 kb on + strandat 374.250 kb on - strandat 374.250 kb on - strandat 374.281 kb on - strandat 374.300 kb on - strandat 374.335 kb on + strandat 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.383 kb on - strand, within EX31_RS23060at 374.383 kb on - strand, within EX31_RS23060at 374.530 kb on - strand, within EX31_RS23060at 374.640 kb on + strand, within EX31_RS23060at 374.640 kb on + strand, within EX31_RS23060at 374.640 kb on + strand, within EX31_RS23060at 374.641 kb on - strand, within EX31_RS23060at 374.735 kb on + strand, within EX31_RS23060at 374.735 kb on + strand, within EX31_RS23060at 374.736 kb on - strand, within EX31_RS23060at 374.749 kb on + strand, within EX31_RS23060at 374.750 kb on - strand, within EX31_RS23060at 374.773 kb on + strand, within EX31_RS23060at 374.777 kb on + strand, within EX31_RS23060at 374.777 kb on + strand, within EX31_RS23060at 374.777 kb on + strand, within EX31_RS23060at 374.778 kb on - strand, within EX31_RS23060at 374.786 kb on + strand, within EX31_RS23060at 374.787 kb on - strand, within EX31_RS23060at 374.862 kb on + strand, within EX31_RS23060at 374.880 kb on + strand, within EX31_RS23060at 374.880 kb on + strand, within EX31_RS23060at 374.976 kb on + strand, within EX31_RS23060at 374.976 kb on + strand, within EX31_RS23060at 374.976 kb on + strand, within EX31_RS23060at 374.993 kb on + strand, within EX31_RS23060at 375.006 kb on + strand, within EX31_RS23060at 375.040 kb on + strand, within EX31_RS23060at 375.040 kb on + strand, within EX31_RS23060at 375.130 kb on + strandat 375.130 kb on + strandat 375.130 kb on + strandat 375.196 kb on - strandat 375.202 kb on + strandat 375.222 kb on + strandat 375.222 kb on + strandat 375.222 kb on + strandat 375.222 kb on + strandat 375.257 kb on + strandat 375.257 kb on + strandat 375.257 kb on + strandat 375.258 kb on - strandat 375.258 kb on - strandat 375.258 kb on - strandat 375.258 kb on - strandat 375.291 kb on + strandat 375.291 kb on + strandat 375.520 kb on + strand, within EX31_RS23065at 375.520 kb on + strand, within EX31_RS23065at 375.522 kb on + strand, within EX31_RS23065at 375.522 kb on + strand, within EX31_RS23065at 375.523 kb on - strand, within EX31_RS23065at 375.555 kb on + strand, within EX31_RS23065at 375.584 kb on - strand, within EX31_RS23065at 375.635 kb on + strand, within EX31_RS23065at 375.636 kb on - strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.834 kb on + strand, within EX31_RS23065at 375.834 kb on + strand, within EX31_RS23065at 375.834 kb on + strand, within EX31_RS23065at 375.834 kb on + strand, within EX31_RS23065at 375.835 kb on - strand, within EX31_RS23065at 375.835 kb on - strand, within EX31_RS23065at 375.835 kb on - strand, within EX31_RS23065at 375.879 kb on + strand, within EX31_RS23065at 375.879 kb on + strand, within EX31_RS23065at 375.879 kb on + strand, within EX31_RS23065at 375.879 kb on + strand, within EX31_RS23065at 375.879 kb on + strand, within EX31_RS23065at 375.879 kb on + strand, within EX31_RS23065at 376.085 kb on + strandat 376.123 kb on + strandat 376.137 kb on + strandat 376.171 kb on + strandat 376.171 kb on + strandat 376.172 kb on - strandat 376.180 kb on + strandat 376.180 kb on + strandat 376.180 kb on + strandat 376.180 kb on + strandat 376.181 kb on - strandat 376.197 kb on + strandat 376.219 kb on - strandat 376.269 kb on + strandat 376.284 kb on + strandat 376.302 kb on + strandat 376.303 kb on - strandat 376.371 kb on + strand, within EX31_RS23070at 376.372 kb on - strand, within EX31_RS23070at 376.655 kb on + strand, within EX31_RS23070at 376.655 kb on + strand, within EX31_RS23070at 376.655 kb on + strand, within EX31_RS23070at 376.656 kb on - strand, within EX31_RS23070at 376.656 kb on - strand, within EX31_RS23070at 376.711 kb on + strand, within EX31_RS23070at 376.712 kb on - strand, within EX31_RS23070at 376.815 kb on + strand, within EX31_RS23070at 376.838 kb on - strand, within EX31_RS23070at 376.861 kb on + strand, within EX31_RS23070at 376.904 kb on + strand, within EX31_RS23070at 376.904 kb on + strand, within EX31_RS23070at 376.905 kb on - strand, within EX31_RS23070at 376.905 kb on - strand, within EX31_RS23070

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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374,249 + +0.4
374,250 - -0.0
374,250 - +0.6
374,281 - +1.1
374,300 - +0.2
374,335 + +0.7
374,382 + EX31_RS23060 0.15 +0.5
374,382 + EX31_RS23060 0.15 +0.8
374,382 + EX31_RS23060 0.15 +1.5
374,382 + EX31_RS23060 0.15 +0.6
374,382 + EX31_RS23060 0.15 +0.2
374,382 + EX31_RS23060 0.15 +0.4
374,382 + EX31_RS23060 0.15 +0.1
374,382 + EX31_RS23060 0.15 +0.2
374,382 + EX31_RS23060 0.15 +1.5
374,382 + EX31_RS23060 0.15 +0.8
374,383 - EX31_RS23060 0.15 +0.2
374,383 - EX31_RS23060 0.15 +1.0
374,530 - EX31_RS23060 0.30 -1.1
374,640 + EX31_RS23060 0.42 +0.6
374,640 + EX31_RS23060 0.42 -0.2
374,640 + EX31_RS23060 0.42 +0.3
374,641 - EX31_RS23060 0.42 -0.2
374,735 + EX31_RS23060 0.52 +1.0
374,735 + EX31_RS23060 0.52 -2.5
374,736 - EX31_RS23060 0.52 +0.1
374,749 + EX31_RS23060 0.53 -0.0
374,750 - EX31_RS23060 0.53 -0.5
374,773 + EX31_RS23060 0.56 -0.7
374,777 + EX31_RS23060 0.56 +0.7
374,777 + EX31_RS23060 0.56 -0.9
374,777 + EX31_RS23060 0.56 +0.1
374,778 - EX31_RS23060 0.56 -0.8
374,786 + EX31_RS23060 0.57 +0.9
374,787 - EX31_RS23060 0.57 +0.6
374,862 + EX31_RS23060 0.65 +0.5
374,880 + EX31_RS23060 0.67 -0.0
374,880 + EX31_RS23060 0.67 +0.0
374,976 + EX31_RS23060 0.77 -0.4
374,976 + EX31_RS23060 0.77 +0.6
374,976 + EX31_RS23060 0.77 -0.1
374,993 + EX31_RS23060 0.79 +0.3
375,006 + EX31_RS23060 0.80 +0.2
375,040 + EX31_RS23060 0.83 +0.3
375,040 + EX31_RS23060 0.83 +0.7
375,130 + +0.9
375,130 + -0.4
375,130 + -0.2
375,196 - -0.5
375,202 + +0.0
375,222 + -0.4
375,222 + +1.3
375,222 + -1.3
375,222 + -1.4
375,257 + +0.3
375,257 + -0.4
375,257 + +0.7
375,258 - +0.9
375,258 - +0.5
375,258 - -0.2
375,258 - -1.4
375,291 + +0.7
375,291 + +0.7
375,520 + EX31_RS23065 0.35 +1.1
375,520 + EX31_RS23065 0.35 +0.7
375,522 + EX31_RS23065 0.35 -0.3
375,522 + EX31_RS23065 0.35 +0.9
375,523 - EX31_RS23065 0.35 +1.2
375,555 + EX31_RS23065 0.39 -1.2
375,584 - EX31_RS23065 0.43 +0.4
375,635 + EX31_RS23065 0.49 +0.1
375,636 - EX31_RS23065 0.49 +0.5
375,832 + EX31_RS23065 0.74 +0.6
375,832 + EX31_RS23065 0.74 -0.7
375,832 + EX31_RS23065 0.74 +0.4
375,832 + EX31_RS23065 0.74 +1.1
375,832 + EX31_RS23065 0.74 +0.6
375,832 + EX31_RS23065 0.74 +0.1
375,832 + EX31_RS23065 0.74 +0.3
375,832 + EX31_RS23065 0.74 +1.0
375,832 + EX31_RS23065 0.74 +0.7
375,832 + EX31_RS23065 0.74 +0.5
375,832 + EX31_RS23065 0.74 +0.0
375,832 + EX31_RS23065 0.74 +1.4
375,832 + EX31_RS23065 0.74 +0.8
375,832 + EX31_RS23065 0.74 +0.4
375,832 + EX31_RS23065 0.74 +0.4
375,832 + EX31_RS23065 0.74 -1.3
375,832 + EX31_RS23065 0.74 -0.2
375,832 + EX31_RS23065 0.74 +1.0
375,832 + EX31_RS23065 0.74 +0.3
375,832 + EX31_RS23065 0.74 +0.5
375,832 + EX31_RS23065 0.74 +0.3
375,832 + EX31_RS23065 0.74 +1.7
375,832 + EX31_RS23065 0.74 +1.1
375,832 + EX31_RS23065 0.74 +0.1
375,832 + EX31_RS23065 0.74 +1.3
375,832 + EX31_RS23065 0.74 -0.2
375,832 + EX31_RS23065 0.74 +1.0
375,832 + EX31_RS23065 0.74 +0.2
375,832 + EX31_RS23065 0.74 +0.1
375,832 + EX31_RS23065 0.74 -0.7
375,833 - EX31_RS23065 0.74 -1.5
375,833 - EX31_RS23065 0.74 +0.2
375,833 - EX31_RS23065 0.74 -0.2
375,833 - EX31_RS23065 0.74 -0.6
375,833 - EX31_RS23065 0.74 +1.4
375,833 - EX31_RS23065 0.74 +0.7
375,833 - EX31_RS23065 0.74 -1.2
375,833 - EX31_RS23065 0.74 -2.2
375,833 - EX31_RS23065 0.74 +1.1
375,833 - EX31_RS23065 0.74 -0.3
375,833 - EX31_RS23065 0.74 +0.5
375,834 + EX31_RS23065 0.74 -0.4
375,834 + EX31_RS23065 0.74 -0.0
375,834 + EX31_RS23065 0.74 -1.1
375,834 + EX31_RS23065 0.74 -0.1
375,835 - EX31_RS23065 0.74 +0.5
375,835 - EX31_RS23065 0.74 +0.5
375,835 - EX31_RS23065 0.74 +0.6
375,879 + EX31_RS23065 0.80 +0.0
375,879 + EX31_RS23065 0.80 +0.6
375,879 + EX31_RS23065 0.80 +0.6
375,879 + EX31_RS23065 0.80 +1.5
375,879 + EX31_RS23065 0.80 -0.6
375,879 + EX31_RS23065 0.80 +0.2
376,085 + +1.1
376,123 + -1.2
376,137 + -0.1
376,171 + -3.5
376,171 + +0.5
376,172 - -0.0
376,180 + +0.4
376,180 + -1.1
376,180 + +0.2
376,180 + +0.3
376,181 - +0.5
376,197 + -0.4
376,219 - -0.1
376,269 + +1.0
376,284 + +1.4
376,302 + +0.3
376,303 - +0.2
376,371 + EX31_RS23070 0.15 +0.4
376,372 - EX31_RS23070 0.15 +0.0
376,655 + EX31_RS23070 0.46 +0.3
376,655 + EX31_RS23070 0.46 +1.1
376,655 + EX31_RS23070 0.46 +0.0
376,656 - EX31_RS23070 0.46 +0.6
376,656 - EX31_RS23070 0.46 +0.6
376,711 + EX31_RS23070 0.52 -0.0
376,712 - EX31_RS23070 0.52 -0.5
376,815 + EX31_RS23070 0.63 -2.6
376,838 - EX31_RS23070 0.66 -1.0
376,861 + EX31_RS23070 0.69 -0.0
376,904 + EX31_RS23070 0.73 +0.5
376,904 + EX31_RS23070 0.73 +1.7
376,905 - EX31_RS23070 0.73 -2.5
376,905 - EX31_RS23070 0.73 +0.5

Or see this region's nucleotide sequence