Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22645 and EX31_RS22650 are separated by 68 nucleotides EX31_RS22650 and EX31_RS22655 are separated by 41 nucleotides EX31_RS22655 and EX31_RS22660 are separated by 204 nucleotides
EX31_RS22645: EX31_RS22645 - cysteine--tRNA ligase, at 284,150 to 285,541
_RS22645
EX31_RS22650: EX31_RS22650 - DNA-3-methyladenine glycosylase 2, at 285,610 to 286,482
_RS22650
EX31_RS22655: EX31_RS22655 - diguanylate cyclase, at 286,524 to 288,773
_RS22655
EX31_RS22660: EX31_RS22660 - magnesium transporter, at 288,978 to 290,417
_RS22660
Position (kb) 286
287
288
289 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 285.544 kb on + strand at 285.545 kb on - strand at 285.545 kb on - strand at 285.558 kb on + strand at 285.558 kb on + strand at 285.558 kb on + strand at 285.558 kb on + strand at 285.569 kb on + strand at 285.595 kb on + strand at 285.595 kb on + strand at 285.597 kb on + strand at 285.632 kb on - strand at 285.643 kb on + strand at 285.643 kb on + strand at 285.726 kb on + strand, within EX31_RS22650 at 285.727 kb on - strand, within EX31_RS22650 at 285.848 kb on + strand, within EX31_RS22650 at 285.848 kb on + strand, within EX31_RS22650 at 285.848 kb on + strand, within EX31_RS22650 at 285.848 kb on + strand, within EX31_RS22650 at 285.848 kb on + strand, within EX31_RS22650 at 285.848 kb on + strand, within EX31_RS22650 at 285.848 kb on + strand, within EX31_RS22650 at 285.848 kb on + strand, within EX31_RS22650 at 285.848 kb on + strand, within EX31_RS22650 at 285.848 kb on + strand, within EX31_RS22650 at 285.848 kb on + strand, within EX31_RS22650 at 285.848 kb on + strand, within EX31_RS22650 at 285.849 kb on - strand, within EX31_RS22650 at 285.849 kb on - strand, within EX31_RS22650 at 285.849 kb on - strand, within EX31_RS22650 at 285.849 kb on - strand, within EX31_RS22650 at 285.849 kb on - strand, within EX31_RS22650 at 285.849 kb on - strand, within EX31_RS22650 at 285.849 kb on - strand, within EX31_RS22650 at 285.849 kb on - strand, within EX31_RS22650 at 285.849 kb on - strand, within EX31_RS22650 at 285.941 kb on + strand, within EX31_RS22650 at 285.941 kb on + strand, within EX31_RS22650 at 286.068 kb on + strand, within EX31_RS22650 at 286.185 kb on + strand, within EX31_RS22650 at 286.297 kb on + strand, within EX31_RS22650 at 286.298 kb on - strand, within EX31_RS22650 at 286.348 kb on + strand, within EX31_RS22650 at 286.348 kb on + strand, within EX31_RS22650 at 286.349 kb on - strand, within EX31_RS22650 at 286.430 kb on - strand at 286.455 kb on + strand at 286.547 kb on + strand at 286.547 kb on + strand at 286.547 kb on + strand at 286.547 kb on + strand at 286.547 kb on + strand at 286.547 kb on + strand at 286.547 kb on + strand at 286.548 kb on - strand at 286.580 kb on - strand at 286.580 kb on - strand at 286.583 kb on + strand at 286.583 kb on + strand at 286.584 kb on - strand at 286.584 kb on - strand at 286.584 kb on - strand at 286.618 kb on + strand at 286.618 kb on + strand at 286.618 kb on + strand at 286.619 kb on - strand at 286.619 kb on - strand at 286.645 kb on + strand at 286.646 kb on - strand at 286.646 kb on - strand at 286.800 kb on + strand, within EX31_RS22655 at 286.801 kb on - strand, within EX31_RS22655 at 286.801 kb on - strand, within EX31_RS22655 at 286.935 kb on - strand, within EX31_RS22655 at 287.049 kb on + strand, within EX31_RS22655 at 287.050 kb on - strand, within EX31_RS22655 at 287.050 kb on - strand, within EX31_RS22655 at 287.068 kb on + strand, within EX31_RS22655 at 287.069 kb on - strand, within EX31_RS22655 at 287.069 kb on - strand, within EX31_RS22655 at 287.069 kb on - strand, within EX31_RS22655 at 287.113 kb on - strand, within EX31_RS22655 at 287.274 kb on - strand, within EX31_RS22655 at 287.297 kb on + strand, within EX31_RS22655 at 287.316 kb on + strand, within EX31_RS22655 at 287.393 kb on + strand, within EX31_RS22655 at 287.393 kb on + strand, within EX31_RS22655 at 287.393 kb on + strand, within EX31_RS22655 at 287.441 kb on + strand, within EX31_RS22655 at 287.441 kb on + strand, within EX31_RS22655 at 287.442 kb on - strand, within EX31_RS22655 at 287.442 kb on - strand, within EX31_RS22655 at 287.507 kb on + strand, within EX31_RS22655 at 287.508 kb on - strand, within EX31_RS22655 at 287.508 kb on - strand, within EX31_RS22655 at 287.519 kb on + strand, within EX31_RS22655 at 287.520 kb on - strand, within EX31_RS22655 at 287.542 kb on + strand, within EX31_RS22655 at 287.543 kb on - strand, within EX31_RS22655 at 287.543 kb on - strand, within EX31_RS22655 at 287.543 kb on - strand, within EX31_RS22655 at 287.543 kb on - strand, within EX31_RS22655 at 287.553 kb on - strand, within EX31_RS22655 at 287.553 kb on - strand, within EX31_RS22655 at 287.597 kb on + strand, within EX31_RS22655 at 287.597 kb on + strand, within EX31_RS22655 at 287.597 kb on + strand, within EX31_RS22655 at 287.598 kb on - strand, within EX31_RS22655 at 287.598 kb on - strand, within EX31_RS22655 at 287.620 kb on + strand, within EX31_RS22655 at 287.620 kb on + strand, within EX31_RS22655 at 287.638 kb on + strand, within EX31_RS22655 at 287.638 kb on + strand, within EX31_RS22655 at 287.638 kb on + strand, within EX31_RS22655 at 287.638 kb on + strand, within EX31_RS22655 at 287.639 kb on - strand, within EX31_RS22655 at 287.639 kb on - strand, within EX31_RS22655 at 287.639 kb on - strand, within EX31_RS22655 at 287.704 kb on + strand, within EX31_RS22655 at 287.704 kb on + strand, within EX31_RS22655 at 287.704 kb on + strand, within EX31_RS22655 at 287.704 kb on + strand, within EX31_RS22655 at 287.704 kb on + strand, within EX31_RS22655 at 287.705 kb on - strand, within EX31_RS22655 at 287.705 kb on - strand, within EX31_RS22655 at 287.705 kb on - strand, within EX31_RS22655 at 287.708 kb on + strand, within EX31_RS22655 at 287.708 kb on + strand, within EX31_RS22655 at 287.708 kb on + strand, within EX31_RS22655 at 287.708 kb on + strand, within EX31_RS22655 at 287.750 kb on - strand, within EX31_RS22655 at 287.999 kb on + strand, within EX31_RS22655 at 288.011 kb on + strand, within EX31_RS22655 at 288.107 kb on + strand, within EX31_RS22655 at 288.108 kb on - strand, within EX31_RS22655 at 288.122 kb on - strand, within EX31_RS22655 at 288.122 kb on - strand, within EX31_RS22655 at 288.220 kb on + strand, within EX31_RS22655 at 288.232 kb on + strand, within EX31_RS22655 at 288.232 kb on + strand, within EX31_RS22655 at 288.232 kb on + strand, within EX31_RS22655 at 288.233 kb on - strand, within EX31_RS22655 at 288.233 kb on - strand, within EX31_RS22655 at 288.233 kb on - strand, within EX31_RS22655 at 288.233 kb on - strand, within EX31_RS22655 at 288.236 kb on + strand, within EX31_RS22655 at 288.236 kb on + strand, within EX31_RS22655 at 288.236 kb on + strand, within EX31_RS22655 at 288.237 kb on - strand, within EX31_RS22655 at 288.237 kb on - strand, within EX31_RS22655 at 288.237 kb on - strand, within EX31_RS22655 at 288.281 kb on + strand, within EX31_RS22655 at 288.281 kb on + strand, within EX31_RS22655 at 288.281 kb on + strand, within EX31_RS22655 at 288.306 kb on + strand, within EX31_RS22655 at 288.307 kb on - strand, within EX31_RS22655 at 288.335 kb on + strand, within EX31_RS22655 at 288.336 kb on - strand, within EX31_RS22655 at 288.351 kb on + strand, within EX31_RS22655 at 288.453 kb on + strand, within EX31_RS22655 at 288.480 kb on - strand, within EX31_RS22655 at 288.496 kb on + strand, within EX31_RS22655 at 288.496 kb on + strand, within EX31_RS22655 at 288.533 kb on + strand, within EX31_RS22655 at 288.533 kb on + strand, within EX31_RS22655 at 288.533 kb on + strand, within EX31_RS22655 at 288.533 kb on + strand, within EX31_RS22655 at 288.533 kb on + strand, within EX31_RS22655 at 288.533 kb on + strand, within EX31_RS22655 at 288.533 kb on + strand, within EX31_RS22655 at 288.533 kb on + strand, within EX31_RS22655 at 288.533 kb on + strand, within EX31_RS22655 at 288.533 kb on + strand, within EX31_RS22655 at 288.533 kb on + strand, within EX31_RS22655 at 288.533 kb on + strand, within EX31_RS22655 at 288.534 kb on - strand, within EX31_RS22655 at 288.534 kb on - strand, within EX31_RS22655 at 288.534 kb on - strand, within EX31_RS22655 at 288.534 kb on - strand, within EX31_RS22655 at 288.534 kb on - strand, within EX31_RS22655 at 288.668 kb on + strand at 288.669 kb on - strand at 288.669 kb on - strand at 288.708 kb on + strand at 288.709 kb on - strand at 288.709 kb on - strand at 288.709 kb on - strand at 288.714 kb on + strand at 288.714 kb on + strand at 288.714 kb on + strand at 288.714 kb on + strand at 288.823 kb on + strand at 288.823 kb on + strand at 288.824 kb on - strand at 288.827 kb on + strand at 288.834 kb on + strand at 288.909 kb on + strand at 288.914 kb on + strand at 288.914 kb on + strand at 288.915 kb on - strand at 288.922 kb on - strand at 288.926 kb on + strand at 288.927 kb on - strand at 288.927 kb on - strand at 288.927 kb on - strand at 288.927 kb on - strand at 288.927 kb on - strand at 288.933 kb on + strand at 288.934 kb on - strand at 288.936 kb on + strand at 288.936 kb on + strand at 288.937 kb on - strand at 288.937 kb on - strand at 288.937 kb on - strand at 288.937 kb on - strand at 288.980 kb on - strand at 289.043 kb on + strand at 289.087 kb on - strand at 289.132 kb on - strand, within EX31_RS22660 at 289.209 kb on + strand, within EX31_RS22660 at 289.209 kb on + strand, within EX31_RS22660 at 289.364 kb on + strand, within EX31_RS22660 at 289.364 kb on + strand, within EX31_RS22660 at 289.364 kb on + strand, within EX31_RS22660 at 289.364 kb on + strand, within EX31_RS22660 at 289.364 kb on + strand, within EX31_RS22660 at 289.365 kb on - strand, within EX31_RS22660 at 289.365 kb on - strand, within EX31_RS22660 at 289.365 kb on - strand, within EX31_RS22660 at 289.446 kb on - strand, within EX31_RS22660 at 289.524 kb on + strand, within EX31_RS22660 at 289.525 kb on - strand, within EX31_RS22660 at 289.525 kb on - strand, within EX31_RS22660 at 289.525 kb on - strand, within EX31_RS22660 at 289.542 kb on + strand, within EX31_RS22660 at 289.542 kb on + strand, within EX31_RS22660 at 289.542 kb on + strand, within EX31_RS22660 at 289.543 kb on - strand, within EX31_RS22660 at 289.543 kb on - strand, within EX31_RS22660 at 289.547 kb on + strand, within EX31_RS22660 at 289.648 kb on + strand, within EX31_RS22660 at 289.649 kb on - strand, within EX31_RS22660 at 289.649 kb on - strand, within EX31_RS22660 at 289.649 kb on - strand, within EX31_RS22660 at 289.736 kb on + strand, within EX31_RS22660 at 289.736 kb on + strand, within EX31_RS22660
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 285,544 + +1.1 285,545 - -1.4 285,545 - +1.9 285,558 + +0.5 285,558 + -0.1 285,558 + +0.6 285,558 + -1.5 285,569 + -1.7 285,595 + +0.9 285,595 + -0.0 285,597 + -0.5 285,632 - +0.8 285,643 + -0.1 285,643 + +1.8 285,726 + EX31_RS22650 0.13 +0.8 285,727 - EX31_RS22650 0.13 -0.3 285,848 + EX31_RS22650 0.27 -0.5 285,848 + EX31_RS22650 0.27 -0.0 285,848 + EX31_RS22650 0.27 -0.6 285,848 + EX31_RS22650 0.27 -0.1 285,848 + EX31_RS22650 0.27 -0.7 285,848 + EX31_RS22650 0.27 -0.0 285,848 + EX31_RS22650 0.27 +0.1 285,848 + EX31_RS22650 0.27 -1.5 285,848 + EX31_RS22650 0.27 +0.2 285,848 + EX31_RS22650 0.27 -1.4 285,848 + EX31_RS22650 0.27 -1.2 285,848 + EX31_RS22650 0.27 -0.1 285,849 - EX31_RS22650 0.27 +0.4 285,849 - EX31_RS22650 0.27 -0.7 285,849 - EX31_RS22650 0.27 +1.7 285,849 - EX31_RS22650 0.27 +0.2 285,849 - EX31_RS22650 0.27 -0.6 285,849 - EX31_RS22650 0.27 -0.2 285,849 - EX31_RS22650 0.27 +1.1 285,849 - EX31_RS22650 0.27 +1.0 285,849 - EX31_RS22650 0.27 -3.0 285,941 + EX31_RS22650 0.38 -0.6 285,941 + EX31_RS22650 0.38 -1.6 286,068 + EX31_RS22650 0.52 -0.9 286,185 + EX31_RS22650 0.66 +0.1 286,297 + EX31_RS22650 0.79 +0.8 286,298 - EX31_RS22650 0.79 +0.7 286,348 + EX31_RS22650 0.85 -0.8 286,348 + EX31_RS22650 0.85 -1.2 286,349 - EX31_RS22650 0.85 -1.0 286,430 - +1.6 286,455 + -0.6 286,547 + +1.1 286,547 + +0.7 286,547 + -0.5 286,547 + -2.8 286,547 + +1.0 286,547 + -0.7 286,547 + +0.7 286,548 - -1.5 286,580 - -0.8 286,580 - -0.4 286,583 + +0.3 286,583 + +0.2 286,584 - +0.2 286,584 - -1.7 286,584 - +0.8 286,618 + +1.2 286,618 + -0.6 286,618 + -0.3 286,619 - -0.4 286,619 - -0.2 286,645 + -0.6 286,646 - +1.5 286,646 - +0.3 286,800 + EX31_RS22655 0.12 +0.4 286,801 - EX31_RS22655 0.12 +1.1 286,801 - EX31_RS22655 0.12 +0.5 286,935 - EX31_RS22655 0.18 +1.1 287,049 + EX31_RS22655 0.23 +1.1 287,050 - EX31_RS22655 0.23 -0.1 287,050 - EX31_RS22655 0.23 -0.1 287,068 + EX31_RS22655 0.24 +1.0 287,069 - EX31_RS22655 0.24 +1.3 287,069 - EX31_RS22655 0.24 +0.3 287,069 - EX31_RS22655 0.24 +0.2 287,113 - EX31_RS22655 0.26 -0.5 287,274 - EX31_RS22655 0.33 +0.3 287,297 + EX31_RS22655 0.34 -0.4 287,316 + EX31_RS22655 0.35 +0.6 287,393 + EX31_RS22655 0.39 +0.5 287,393 + EX31_RS22655 0.39 -0.7 287,393 + EX31_RS22655 0.39 +0.6 287,441 + EX31_RS22655 0.41 -1.1 287,441 + EX31_RS22655 0.41 -0.4 287,442 - EX31_RS22655 0.41 -0.2 287,442 - EX31_RS22655 0.41 -1.9 287,507 + EX31_RS22655 0.44 +0.5 287,508 - EX31_RS22655 0.44 +0.1 287,508 - EX31_RS22655 0.44 -2.1 287,519 + EX31_RS22655 0.44 +0.7 287,520 - EX31_RS22655 0.44 +0.4 287,542 + EX31_RS22655 0.45 +0.5 287,543 - EX31_RS22655 0.45 +1.4 287,543 - EX31_RS22655 0.45 -0.5 287,543 - EX31_RS22655 0.45 -0.1 287,543 - EX31_RS22655 0.45 -0.5 287,553 - EX31_RS22655 0.46 -0.0 287,553 - EX31_RS22655 0.46 +0.2 287,597 + EX31_RS22655 0.48 -0.3 287,597 + EX31_RS22655 0.48 -0.8 287,597 + EX31_RS22655 0.48 +0.1 287,598 - EX31_RS22655 0.48 +1.0 287,598 - EX31_RS22655 0.48 +0.3 287,620 + EX31_RS22655 0.49 -0.4 287,620 + EX31_RS22655 0.49 +1.9 287,638 + EX31_RS22655 0.50 +0.6 287,638 + EX31_RS22655 0.50 -0.3 287,638 + EX31_RS22655 0.50 -1.0 287,638 + EX31_RS22655 0.50 +0.2 287,639 - EX31_RS22655 0.50 +0.5 287,639 - EX31_RS22655 0.50 +0.3 287,639 - EX31_RS22655 0.50 +1.6 287,704 + EX31_RS22655 0.52 +0.3 287,704 + EX31_RS22655 0.52 +1.4 287,704 + EX31_RS22655 0.52 -1.2 287,704 + EX31_RS22655 0.52 -0.8 287,704 + EX31_RS22655 0.52 +0.8 287,705 - EX31_RS22655 0.52 +1.1 287,705 - EX31_RS22655 0.52 +1.1 287,705 - EX31_RS22655 0.52 -0.8 287,708 + EX31_RS22655 0.53 +0.3 287,708 + EX31_RS22655 0.53 -2.7 287,708 + EX31_RS22655 0.53 +0.3 287,708 + EX31_RS22655 0.53 -0.4 287,750 - EX31_RS22655 0.54 +0.9 287,999 + EX31_RS22655 0.66 -0.8 288,011 + EX31_RS22655 0.66 -1.9 288,107 + EX31_RS22655 0.70 +0.8 288,108 - EX31_RS22655 0.70 +0.6 288,122 - EX31_RS22655 0.71 +1.4 288,122 - EX31_RS22655 0.71 -0.7 288,220 + EX31_RS22655 0.75 +0.8 288,232 + EX31_RS22655 0.76 +2.0 288,232 + EX31_RS22655 0.76 +0.6 288,232 + EX31_RS22655 0.76 -0.4 288,233 - EX31_RS22655 0.76 +2.0 288,233 - EX31_RS22655 0.76 +0.3 288,233 - EX31_RS22655 0.76 -1.0 288,233 - EX31_RS22655 0.76 +0.9 288,236 + EX31_RS22655 0.76 +0.3 288,236 + EX31_RS22655 0.76 +0.2 288,236 + EX31_RS22655 0.76 -0.6 288,237 - EX31_RS22655 0.76 -0.1 288,237 - EX31_RS22655 0.76 -0.3 288,237 - EX31_RS22655 0.76 -2.9 288,281 + EX31_RS22655 0.78 +1.4 288,281 + EX31_RS22655 0.78 +0.9 288,281 + EX31_RS22655 0.78 -0.4 288,306 + EX31_RS22655 0.79 -1.2 288,307 - EX31_RS22655 0.79 +0.9 288,335 + EX31_RS22655 0.80 +0.2 288,336 - EX31_RS22655 0.81 -0.0 288,351 + EX31_RS22655 0.81 -0.6 288,453 + EX31_RS22655 0.86 +1.3 288,480 - EX31_RS22655 0.87 +0.4 288,496 + EX31_RS22655 0.88 +0.9 288,496 + EX31_RS22655 0.88 +1.4 288,533 + EX31_RS22655 0.89 -1.9 288,533 + EX31_RS22655 0.89 -0.7 288,533 + EX31_RS22655 0.89 +0.1 288,533 + EX31_RS22655 0.89 +0.8 288,533 + EX31_RS22655 0.89 +1.2 288,533 + EX31_RS22655 0.89 +0.4 288,533 + EX31_RS22655 0.89 +0.8 288,533 + EX31_RS22655 0.89 -0.3 288,533 + EX31_RS22655 0.89 -1.6 288,533 + EX31_RS22655 0.89 -0.6 288,533 + EX31_RS22655 0.89 +1.2 288,533 + EX31_RS22655 0.89 +0.8 288,534 - EX31_RS22655 0.89 -2.5 288,534 - EX31_RS22655 0.89 -1.3 288,534 - EX31_RS22655 0.89 +1.5 288,534 - EX31_RS22655 0.89 -1.0 288,534 - EX31_RS22655 0.89 -1.4 288,668 + +1.1 288,669 - -3.5 288,669 - -0.8 288,708 + +0.7 288,709 - -0.6 288,709 - -0.3 288,709 - -1.8 288,714 + +0.3 288,714 + -0.2 288,714 + -0.9 288,714 + -1.4 288,823 + -0.9 288,823 + +0.5 288,824 - +0.5 288,827 + -1.3 288,834 + -3.3 288,909 + +0.7 288,914 + +0.6 288,914 + -2.0 288,915 - -1.4 288,922 - +0.2 288,926 + -0.3 288,927 - +0.4 288,927 - +0.2 288,927 - -0.9 288,927 - -1.6 288,927 - -0.2 288,933 + +0.8 288,934 - +0.5 288,936 + -2.5 288,936 + +0.7 288,937 - -0.5 288,937 - -1.0 288,937 - +0.2 288,937 - -1.2 288,980 - +1.2 289,043 + -1.8 289,087 - -0.1 289,132 - EX31_RS22660 0.11 -0.0 289,209 + EX31_RS22660 0.16 +0.4 289,209 + EX31_RS22660 0.16 +0.2 289,364 + EX31_RS22660 0.27 -0.7 289,364 + EX31_RS22660 0.27 +0.4 289,364 + EX31_RS22660 0.27 +0.0 289,364 + EX31_RS22660 0.27 -0.0 289,364 + EX31_RS22660 0.27 -0.1 289,365 - EX31_RS22660 0.27 +0.3 289,365 - EX31_RS22660 0.27 +0.2 289,365 - EX31_RS22660 0.27 -0.0 289,446 - EX31_RS22660 0.33 -1.7 289,524 + EX31_RS22660 0.38 -0.3 289,525 - EX31_RS22660 0.38 -1.9 289,525 - EX31_RS22660 0.38 +0.3 289,525 - EX31_RS22660 0.38 -0.3 289,542 + EX31_RS22660 0.39 -0.8 289,542 + EX31_RS22660 0.39 +0.8 289,542 + EX31_RS22660 0.39 +0.1 289,543 - EX31_RS22660 0.39 +0.6 289,543 - EX31_RS22660 0.39 -0.7 289,547 + EX31_RS22660 0.40 +0.9 289,648 + EX31_RS22660 0.47 -1.0 289,649 - EX31_RS22660 0.47 -1.2 289,649 - EX31_RS22660 0.47 +0.5 289,649 - EX31_RS22660 0.47 -1.0 289,736 + EX31_RS22660 0.53 +1.8 289,736 + EX31_RS22660 0.53 -1.5
Or see this region's nucleotide sequence