Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17760 and EX31_RS17765 are separated by 10 nucleotides EX31_RS17765 and EX31_RS17770 overlap by 14 nucleotides EX31_RS17770 and EX31_RS17775 are separated by 371 nucleotides
EX31_RS17760: EX31_RS17760 - EmmdR/YeeO family multidrug/toxin efflux MATE transporter, at 107,090 to 108,520
_RS17760
EX31_RS17765: EX31_RS17765 - response regulator, at 108,531 to 109,220
_RS17765
EX31_RS17770: EX31_RS17770 - sensor histidine kinase, at 109,207 to 110,874
_RS17770
EX31_RS17775: EX31_RS17775 - 2-hydroxycarboxylate transporter family protein, at 111,246 to 112,610
_RS17775
Position (kb) 109
110
111 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 108.253 kb on + strand, within EX31_RS17760 at 108.254 kb on - strand, within EX31_RS17760 at 108.326 kb on + strand, within EX31_RS17760 at 108.326 kb on + strand, within EX31_RS17760 at 108.326 kb on + strand, within EX31_RS17760 at 108.326 kb on + strand, within EX31_RS17760 at 108.326 kb on + strand, within EX31_RS17760 at 108.326 kb on + strand, within EX31_RS17760 at 108.326 kb on + strand, within EX31_RS17760 at 108.326 kb on + strand, within EX31_RS17760 at 108.326 kb on + strand, within EX31_RS17760 at 108.326 kb on + strand, within EX31_RS17760 at 108.326 kb on + strand, within EX31_RS17760 at 108.327 kb on - strand, within EX31_RS17760 at 108.327 kb on - strand, within EX31_RS17760 at 108.327 kb on - strand, within EX31_RS17760 at 108.327 kb on - strand, within EX31_RS17760 at 108.327 kb on - strand, within EX31_RS17760 at 108.327 kb on - strand, within EX31_RS17760 at 108.334 kb on + strand, within EX31_RS17760 at 108.371 kb on + strand, within EX31_RS17760 at 108.523 kb on + strand at 108.545 kb on - strand at 108.575 kb on - strand at 108.575 kb on - strand at 108.702 kb on - strand, within EX31_RS17765 at 108.702 kb on - strand, within EX31_RS17765 at 108.723 kb on + strand, within EX31_RS17765 at 108.724 kb on - strand, within EX31_RS17765 at 108.746 kb on + strand, within EX31_RS17765 at 108.798 kb on + strand, within EX31_RS17765 at 108.799 kb on - strand, within EX31_RS17765 at 108.799 kb on - strand, within EX31_RS17765 at 108.904 kb on + strand, within EX31_RS17765 at 108.904 kb on + strand, within EX31_RS17765 at 108.904 kb on + strand, within EX31_RS17765 at 108.905 kb on - strand, within EX31_RS17765 at 108.905 kb on - strand, within EX31_RS17765 at 108.942 kb on - strand, within EX31_RS17765 at 109.039 kb on + strand, within EX31_RS17765 at 109.039 kb on + strand, within EX31_RS17765 at 109.039 kb on + strand, within EX31_RS17765 at 109.040 kb on - strand, within EX31_RS17765 at 109.040 kb on - strand, within EX31_RS17765 at 109.040 kb on - strand, within EX31_RS17765 at 109.040 kb on - strand, within EX31_RS17765 at 109.040 kb on - strand, within EX31_RS17765 at 109.040 kb on - strand, within EX31_RS17765 at 109.040 kb on - strand, within EX31_RS17765 at 109.040 kb on - strand, within EX31_RS17765 at 109.040 kb on - strand, within EX31_RS17765 at 109.044 kb on - strand, within EX31_RS17765 at 109.139 kb on + strand, within EX31_RS17765 at 109.140 kb on - strand, within EX31_RS17765 at 109.156 kb on + strand at 109.157 kb on - strand at 109.194 kb on + strand at 109.195 kb on - strand at 109.195 kb on - strand at 109.296 kb on + strand at 109.367 kb on + strand at 109.367 kb on + strand at 109.367 kb on + strand at 109.368 kb on - strand at 109.368 kb on - strand at 109.368 kb on - strand at 109.368 kb on - strand at 109.368 kb on - strand at 109.517 kb on + strand, within EX31_RS17770 at 109.517 kb on + strand, within EX31_RS17770 at 109.517 kb on + strand, within EX31_RS17770 at 109.517 kb on + strand, within EX31_RS17770 at 109.517 kb on + strand, within EX31_RS17770 at 109.518 kb on - strand, within EX31_RS17770 at 109.518 kb on - strand, within EX31_RS17770 at 109.518 kb on - strand, within EX31_RS17770 at 109.631 kb on + strand, within EX31_RS17770 at 109.631 kb on + strand, within EX31_RS17770 at 109.632 kb on - strand, within EX31_RS17770 at 109.632 kb on - strand, within EX31_RS17770 at 109.632 kb on - strand, within EX31_RS17770 at 109.632 kb on - strand, within EX31_RS17770 at 109.637 kb on - strand, within EX31_RS17770 at 109.637 kb on - strand, within EX31_RS17770 at 109.637 kb on - strand, within EX31_RS17770 at 109.706 kb on - strand, within EX31_RS17770 at 109.786 kb on - strand, within EX31_RS17770 at 109.787 kb on + strand, within EX31_RS17770 at 109.805 kb on + strand, within EX31_RS17770 at 109.805 kb on + strand, within EX31_RS17770 at 109.815 kb on + strand, within EX31_RS17770 at 109.816 kb on - strand, within EX31_RS17770 at 109.816 kb on - strand, within EX31_RS17770 at 109.903 kb on + strand, within EX31_RS17770 at 110.571 kb on - strand, within EX31_RS17770 at 110.571 kb on - strand, within EX31_RS17770 at 110.591 kb on - strand, within EX31_RS17770 at 110.599 kb on - strand, within EX31_RS17770 at 110.616 kb on + strand, within EX31_RS17770 at 110.617 kb on - strand, within EX31_RS17770 at 110.617 kb on - strand, within EX31_RS17770 at 110.617 kb on - strand, within EX31_RS17770 at 110.617 kb on - strand, within EX31_RS17770 at 110.618 kb on + strand, within EX31_RS17770 at 110.619 kb on - strand, within EX31_RS17770 at 110.619 kb on - strand, within EX31_RS17770 at 110.619 kb on - strand, within EX31_RS17770 at 110.654 kb on - strand, within EX31_RS17770 at 111.311 kb on - strand at 111.400 kb on + strand, within EX31_RS17775 at 111.561 kb on + strand, within EX31_RS17775 at 111.561 kb on + strand, within EX31_RS17775 at 111.609 kb on + strand, within EX31_RS17775 at 111.610 kb on - strand, within EX31_RS17775 at 111.610 kb on - strand, within EX31_RS17775 at 111.612 kb on - strand, within EX31_RS17775 at 111.612 kb on - strand, within EX31_RS17775 at 111.630 kb on + strand, within EX31_RS17775 at 111.630 kb on + strand, within EX31_RS17775 at 111.630 kb on + strand, within EX31_RS17775 at 111.636 kb on + strand, within EX31_RS17775 at 111.636 kb on + strand, within EX31_RS17775 at 111.636 kb on + strand, within EX31_RS17775 at 111.637 kb on - strand, within EX31_RS17775 at 111.707 kb on + strand, within EX31_RS17775 at 111.707 kb on + strand, within EX31_RS17775
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 108,253 + EX31_RS17760 0.81 +1.2 108,254 - EX31_RS17760 0.81 -0.4 108,326 + EX31_RS17760 0.86 -0.4 108,326 + EX31_RS17760 0.86 -2.7 108,326 + EX31_RS17760 0.86 -2.6 108,326 + EX31_RS17760 0.86 -2.0 108,326 + EX31_RS17760 0.86 +0.5 108,326 + EX31_RS17760 0.86 -0.1 108,326 + EX31_RS17760 0.86 -0.1 108,326 + EX31_RS17760 0.86 +0.8 108,326 + EX31_RS17760 0.86 +1.5 108,326 + EX31_RS17760 0.86 +0.6 108,326 + EX31_RS17760 0.86 +0.6 108,327 - EX31_RS17760 0.86 -1.3 108,327 - EX31_RS17760 0.86 +1.4 108,327 - EX31_RS17760 0.86 +1.1 108,327 - EX31_RS17760 0.86 +0.2 108,327 - EX31_RS17760 0.86 -3.1 108,327 - EX31_RS17760 0.86 +1.0 108,334 + EX31_RS17760 0.87 -1.0 108,371 + EX31_RS17760 0.90 +0.7 108,523 + +0.3 108,545 - -0.1 108,575 - -3.6 108,575 - -0.1 108,702 - EX31_RS17765 0.25 -0.0 108,702 - EX31_RS17765 0.25 +1.2 108,723 + EX31_RS17765 0.28 +0.1 108,724 - EX31_RS17765 0.28 -1.0 108,746 + EX31_RS17765 0.31 -0.4 108,798 + EX31_RS17765 0.39 -0.6 108,799 - EX31_RS17765 0.39 -1.3 108,799 - EX31_RS17765 0.39 -0.2 108,904 + EX31_RS17765 0.54 +0.6 108,904 + EX31_RS17765 0.54 +0.7 108,904 + EX31_RS17765 0.54 -0.4 108,905 - EX31_RS17765 0.54 -1.4 108,905 - EX31_RS17765 0.54 -0.0 108,942 - EX31_RS17765 0.60 -0.6 109,039 + EX31_RS17765 0.74 -0.7 109,039 + EX31_RS17765 0.74 -1.2 109,039 + EX31_RS17765 0.74 -0.1 109,040 - EX31_RS17765 0.74 -2.1 109,040 - EX31_RS17765 0.74 -2.8 109,040 - EX31_RS17765 0.74 -1.1 109,040 - EX31_RS17765 0.74 -0.5 109,040 - EX31_RS17765 0.74 +0.9 109,040 - EX31_RS17765 0.74 -1.6 109,040 - EX31_RS17765 0.74 -0.1 109,040 - EX31_RS17765 0.74 -2.1 109,040 - EX31_RS17765 0.74 +0.2 109,044 - EX31_RS17765 0.74 +0.6 109,139 + EX31_RS17765 0.88 -0.1 109,140 - EX31_RS17765 0.88 +0.7 109,156 + -1.4 109,157 - +1.2 109,194 + -1.0 109,195 - +0.6 109,195 - -2.0 109,296 + -1.6 109,367 + -0.4 109,367 + +1.8 109,367 + -1.2 109,368 - -0.9 109,368 - +0.1 109,368 - -1.9 109,368 - +0.5 109,368 - -0.3 109,517 + EX31_RS17770 0.19 -0.6 109,517 + EX31_RS17770 0.19 -0.1 109,517 + EX31_RS17770 0.19 -0.4 109,517 + EX31_RS17770 0.19 -0.6 109,517 + EX31_RS17770 0.19 +0.5 109,518 - EX31_RS17770 0.19 -1.8 109,518 - EX31_RS17770 0.19 -0.1 109,518 - EX31_RS17770 0.19 -0.4 109,631 + EX31_RS17770 0.25 -0.2 109,631 + EX31_RS17770 0.25 +0.1 109,632 - EX31_RS17770 0.25 -0.4 109,632 - EX31_RS17770 0.25 -1.4 109,632 - EX31_RS17770 0.25 +1.0 109,632 - EX31_RS17770 0.25 -1.6 109,637 - EX31_RS17770 0.26 -0.1 109,637 - EX31_RS17770 0.26 +0.8 109,637 - EX31_RS17770 0.26 -3.0 109,706 - EX31_RS17770 0.30 +0.1 109,786 - EX31_RS17770 0.35 -3.7 109,787 + EX31_RS17770 0.35 -2.3 109,805 + EX31_RS17770 0.36 +0.1 109,805 + EX31_RS17770 0.36 -1.8 109,815 + EX31_RS17770 0.36 -1.0 109,816 - EX31_RS17770 0.37 +0.3 109,816 - EX31_RS17770 0.37 +0.4 109,903 + EX31_RS17770 0.42 +0.9 110,571 - EX31_RS17770 0.82 +0.3 110,571 - EX31_RS17770 0.82 +0.6 110,591 - EX31_RS17770 0.83 -0.8 110,599 - EX31_RS17770 0.83 +0.1 110,616 + EX31_RS17770 0.84 +0.3 110,617 - EX31_RS17770 0.85 +0.0 110,617 - EX31_RS17770 0.85 -1.1 110,617 - EX31_RS17770 0.85 +0.2 110,617 - EX31_RS17770 0.85 +0.2 110,618 + EX31_RS17770 0.85 +0.4 110,619 - EX31_RS17770 0.85 +0.5 110,619 - EX31_RS17770 0.85 -0.3 110,619 - EX31_RS17770 0.85 +0.1 110,654 - EX31_RS17770 0.87 +0.1 111,311 - -3.7 111,400 + EX31_RS17775 0.11 +2.1 111,561 + EX31_RS17775 0.23 +0.1 111,561 + EX31_RS17775 0.23 +2.3 111,609 + EX31_RS17775 0.27 -0.3 111,610 - EX31_RS17775 0.27 -0.6 111,610 - EX31_RS17775 0.27 +0.7 111,612 - EX31_RS17775 0.27 -0.9 111,612 - EX31_RS17775 0.27 -1.4 111,630 + EX31_RS17775 0.28 -0.1 111,630 + EX31_RS17775 0.28 -0.7 111,630 + EX31_RS17775 0.28 -0.2 111,636 + EX31_RS17775 0.29 +1.9 111,636 + EX31_RS17775 0.29 -0.3 111,636 + EX31_RS17775 0.29 -0.1 111,637 - EX31_RS17775 0.29 -1.0 111,707 + EX31_RS17775 0.34 -1.3 111,707 + EX31_RS17775 0.34 -1.9
Or see this region's nucleotide sequence