Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10820 and EX31_RS10825 are separated by 177 nucleotides EX31_RS10825 and EX31_RS10830 are separated by 102 nucleotides EX31_RS10830 and EX31_RS10835 are separated by 14 nucleotides
EX31_RS10820: EX31_RS10820 - magnesium/cobalt transporter CorA, at 85,588 to 86,595
_RS10820
EX31_RS10825: EX31_RS10825 - hypothetical protein, at 86,773 to 87,192
_RS10825
EX31_RS10830: EX31_RS10830 - copper-binding protein, at 87,295 to 87,630
_RS10830
EX31_RS10835: EX31_RS10835 - TolC family protein, at 87,645 to 88,898
_RS10835
Position (kb) 87
88 Strain fitness (log2 ratio) -2
-1
0
1
2 at 86.470 kb on + strand, within EX31_RS10820 at 86.561 kb on + strand at 86.564 kb on - strand at 86.626 kb on + strand at 86.627 kb on - strand at 86.653 kb on + strand at 86.734 kb on - strand at 86.734 kb on - strand at 86.734 kb on - strand at 86.734 kb on - strand at 86.735 kb on + strand at 86.765 kb on + strand at 86.943 kb on + strand, within EX31_RS10825 at 86.943 kb on + strand, within EX31_RS10825 at 86.944 kb on - strand, within EX31_RS10825 at 87.226 kb on + strand at 87.252 kb on + strand at 87.270 kb on + strand at 87.279 kb on + strand at 87.381 kb on + strand, within EX31_RS10830 at 87.384 kb on + strand, within EX31_RS10830 at 87.384 kb on + strand, within EX31_RS10830 at 87.400 kb on - strand, within EX31_RS10830 at 87.402 kb on + strand, within EX31_RS10830 at 87.413 kb on - strand, within EX31_RS10830 at 87.948 kb on + strand, within EX31_RS10835 at 87.949 kb on - strand, within EX31_RS10835 at 87.949 kb on - strand, within EX31_RS10835 at 88.106 kb on - strand, within EX31_RS10835 at 88.386 kb on - strand, within EX31_RS10835 at 88.497 kb on + strand, within EX31_RS10835 at 88.497 kb on + strand, within EX31_RS10835 at 88.562 kb on + strand, within EX31_RS10835
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 86,470 + EX31_RS10820 0.88 +0.7 86,561 + -0.1 86,564 - -1.7 86,626 + -0.5 86,627 - +2.4 86,653 + +0.9 86,734 - -1.9 86,734 - +1.3 86,734 - -1.3 86,734 - +0.2 86,735 + +0.5 86,765 + -0.6 86,943 + EX31_RS10825 0.40 +0.3 86,943 + EX31_RS10825 0.40 -0.8 86,944 - EX31_RS10825 0.41 +0.5 87,226 + -0.9 87,252 + +0.5 87,270 + +0.4 87,279 + -0.2 87,381 + EX31_RS10830 0.26 -2.1 87,384 + EX31_RS10830 0.26 -0.2 87,384 + EX31_RS10830 0.26 -1.2 87,400 - EX31_RS10830 0.31 -0.4 87,402 + EX31_RS10830 0.32 -2.1 87,413 - EX31_RS10830 0.35 -0.0 87,948 + EX31_RS10835 0.24 -1.9 87,949 - EX31_RS10835 0.24 +0.8 87,949 - EX31_RS10835 0.24 +0.3 88,106 - EX31_RS10835 0.37 -0.7 88,386 - EX31_RS10835 0.59 +0.7 88,497 + EX31_RS10835 0.68 -0.3 88,497 + EX31_RS10835 0.68 +2.1 88,562 + EX31_RS10835 0.73 -0.5
Or see this region's nucleotide sequence