Strain Fitness in Rahnella sp. WP5 around EX31_RS05125

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS05120 and EX31_RS05125 overlap by 4 nucleotidesEX31_RS05125 and EX31_RS05130 are separated by 156 nucleotides EX31_RS05120: EX31_RS05120 - serine hydrolase, at 160,335 to 161,585 _RS05120 EX31_RS05125: EX31_RS05125 - hypothetical protein, at 161,582 to 161,824 _RS05125 EX31_RS05130: EX31_RS05130 - HAMP domain-containing protein, at 161,981 to 163,636 _RS05130 Position (kb) 161 162Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 160.603 kb on - strand, within EX31_RS05120at 160.619 kb on - strand, within EX31_RS05120at 160.690 kb on + strand, within EX31_RS05120at 160.691 kb on - strand, within EX31_RS05120at 160.691 kb on - strand, within EX31_RS05120at 160.712 kb on + strand, within EX31_RS05120at 160.712 kb on + strand, within EX31_RS05120at 160.713 kb on - strand, within EX31_RS05120at 160.713 kb on - strand, within EX31_RS05120at 160.713 kb on - strand, within EX31_RS05120at 160.718 kb on - strand, within EX31_RS05120at 160.739 kb on + strand, within EX31_RS05120at 160.739 kb on + strand, within EX31_RS05120at 160.739 kb on + strand, within EX31_RS05120at 160.739 kb on + strand, within EX31_RS05120at 160.740 kb on - strand, within EX31_RS05120at 160.740 kb on - strand, within EX31_RS05120at 160.742 kb on + strand, within EX31_RS05120at 160.743 kb on - strand, within EX31_RS05120at 160.743 kb on - strand, within EX31_RS05120at 160.828 kb on + strand, within EX31_RS05120at 160.837 kb on - strand, within EX31_RS05120at 160.894 kb on + strand, within EX31_RS05120at 160.899 kb on + strand, within EX31_RS05120at 160.899 kb on + strand, within EX31_RS05120at 160.937 kb on + strand, within EX31_RS05120at 160.939 kb on + strand, within EX31_RS05120at 160.939 kb on + strand, within EX31_RS05120at 160.959 kb on + strand, within EX31_RS05120at 160.965 kb on - strand, within EX31_RS05120at 161.013 kb on - strand, within EX31_RS05120at 161.044 kb on + strand, within EX31_RS05120at 161.045 kb on - strand, within EX31_RS05120at 161.045 kb on - strand, within EX31_RS05120at 161.045 kb on - strand, within EX31_RS05120at 161.062 kb on + strand, within EX31_RS05120at 161.062 kb on + strand, within EX31_RS05120at 161.063 kb on - strand, within EX31_RS05120at 161.063 kb on - strand, within EX31_RS05120at 161.063 kb on - strand, within EX31_RS05120at 161.064 kb on + strand, within EX31_RS05120at 161.064 kb on + strand, within EX31_RS05120at 161.064 kb on + strand, within EX31_RS05120at 161.064 kb on + strand, within EX31_RS05120at 161.064 kb on + strand, within EX31_RS05120at 161.064 kb on + strand, within EX31_RS05120at 161.064 kb on + strand, within EX31_RS05120at 161.064 kb on + strand, within EX31_RS05120at 161.065 kb on - strand, within EX31_RS05120at 161.065 kb on - strand, within EX31_RS05120at 161.065 kb on - strand, within EX31_RS05120at 161.065 kb on - strand, within EX31_RS05120at 161.065 kb on - strand, within EX31_RS05120at 161.065 kb on - strand, within EX31_RS05120at 161.065 kb on - strand, within EX31_RS05120at 161.065 kb on - strand, within EX31_RS05120at 161.065 kb on - strand, within EX31_RS05120at 161.065 kb on - strand, within EX31_RS05120at 161.065 kb on - strand, within EX31_RS05120at 161.065 kb on - strand, within EX31_RS05120at 161.065 kb on - strand, within EX31_RS05120at 161.069 kb on - strand, within EX31_RS05120at 161.069 kb on - strand, within EX31_RS05120at 161.069 kb on - strand, within EX31_RS05120at 161.090 kb on + strand, within EX31_RS05120at 161.090 kb on + strand, within EX31_RS05120at 161.091 kb on - strand, within EX31_RS05120at 161.091 kb on - strand, within EX31_RS05120at 161.126 kb on + strand, within EX31_RS05120at 161.127 kb on - strand, within EX31_RS05120at 161.127 kb on - strand, within EX31_RS05120at 161.127 kb on - strand, within EX31_RS05120at 161.127 kb on - strand, within EX31_RS05120at 161.127 kb on - strand, within EX31_RS05120at 161.153 kb on + strand, within EX31_RS05120at 161.153 kb on + strand, within EX31_RS05120at 161.154 kb on - strand, within EX31_RS05120at 161.154 kb on - strand, within EX31_RS05120at 161.193 kb on + strand, within EX31_RS05120at 161.193 kb on + strand, within EX31_RS05120at 161.193 kb on + strand, within EX31_RS05120at 161.221 kb on - strand, within EX31_RS05120at 161.221 kb on - strand, within EX31_RS05120at 161.221 kb on - strand, within EX31_RS05120at 161.315 kb on - strand, within EX31_RS05120at 161.315 kb on - strand, within EX31_RS05120at 161.333 kb on + strand, within EX31_RS05120at 161.333 kb on + strand, within EX31_RS05120at 161.334 kb on - strand, within EX31_RS05120at 161.334 kb on - strand, within EX31_RS05120at 161.336 kb on - strand, within EX31_RS05120at 161.341 kb on + strand, within EX31_RS05120at 161.416 kb on + strand, within EX31_RS05120at 161.460 kb on - strand, within EX31_RS05120at 161.553 kb on + strandat 161.553 kb on + strandat 161.554 kb on - strandat 161.596 kb on + strandat 161.596 kb on + strandat 161.597 kb on - strandat 161.597 kb on - strandat 161.597 kb on - strandat 161.599 kb on - strandat 161.599 kb on - strandat 161.608 kb on + strand, within EX31_RS05125at 161.609 kb on - strand, within EX31_RS05125at 161.609 kb on - strand, within EX31_RS05125at 161.624 kb on - strand, within EX31_RS05125at 161.624 kb on - strand, within EX31_RS05125at 161.624 kb on - strand, within EX31_RS05125at 161.700 kb on - strand, within EX31_RS05125at 161.777 kb on + strand, within EX31_RS05125at 161.816 kb on + strandat 161.980 kb on + strandat 161.980 kb on + strandat 161.980 kb on + strandat 161.980 kb on + strandat 161.981 kb on - strandat 162.003 kb on + strandat 162.004 kb on - strandat 162.004 kb on - strandat 162.092 kb on + strandat 162.106 kb on + strandat 162.121 kb on + strandat 162.121 kb on + strandat 162.121 kb on + strandat 162.122 kb on - strandat 162.122 kb on - strandat 162.133 kb on + strandat 162.140 kb on - strandat 162.154 kb on + strand, within EX31_RS05130at 162.155 kb on - strand, within EX31_RS05130at 162.155 kb on - strand, within EX31_RS05130at 162.173 kb on + strand, within EX31_RS05130at 162.173 kb on + strand, within EX31_RS05130at 162.173 kb on + strand, within EX31_RS05130at 162.173 kb on + strand, within EX31_RS05130at 162.174 kb on - strand, within EX31_RS05130at 162.174 kb on - strand, within EX31_RS05130at 162.174 kb on - strand, within EX31_RS05130at 162.175 kb on + strand, within EX31_RS05130at 162.175 kb on + strand, within EX31_RS05130at 162.176 kb on - strand, within EX31_RS05130at 162.176 kb on - strand, within EX31_RS05130at 162.176 kb on - strand, within EX31_RS05130at 162.176 kb on - strand, within EX31_RS05130at 162.196 kb on + strand, within EX31_RS05130at 162.197 kb on - strand, within EX31_RS05130at 162.216 kb on + strand, within EX31_RS05130at 162.216 kb on + strand, within EX31_RS05130at 162.217 kb on - strand, within EX31_RS05130at 162.266 kb on + strand, within EX31_RS05130at 162.266 kb on + strand, within EX31_RS05130at 162.267 kb on - strand, within EX31_RS05130at 162.267 kb on - strand, within EX31_RS05130at 162.267 kb on - strand, within EX31_RS05130at 162.270 kb on - strand, within EX31_RS05130at 162.331 kb on + strand, within EX31_RS05130at 162.475 kb on + strand, within EX31_RS05130at 162.475 kb on + strand, within EX31_RS05130at 162.475 kb on + strand, within EX31_RS05130at 162.475 kb on + strand, within EX31_RS05130at 162.476 kb on - strand, within EX31_RS05130at 162.476 kb on - strand, within EX31_RS05130at 162.480 kb on + strand, within EX31_RS05130at 162.480 kb on + strand, within EX31_RS05130at 162.480 kb on + strand, within EX31_RS05130at 162.481 kb on - strand, within EX31_RS05130at 162.481 kb on - strand, within EX31_RS05130at 162.481 kb on - strand, within EX31_RS05130at 162.484 kb on + strand, within EX31_RS05130at 162.485 kb on - strand, within EX31_RS05130at 162.485 kb on - strand, within EX31_RS05130at 162.485 kb on - strand, within EX31_RS05130at 162.485 kb on - strand, within EX31_RS05130at 162.485 kb on - strand, within EX31_RS05130at 162.562 kb on - strand, within EX31_RS05130at 162.562 kb on - strand, within EX31_RS05130at 162.571 kb on + strand, within EX31_RS05130

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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160,603 - EX31_RS05120 0.21 -0.3
160,619 - EX31_RS05120 0.23 -1.4
160,690 + EX31_RS05120 0.28 -0.7
160,691 - EX31_RS05120 0.28 -2.5
160,691 - EX31_RS05120 0.28 -0.1
160,712 + EX31_RS05120 0.30 -0.0
160,712 + EX31_RS05120 0.30 -0.3
160,713 - EX31_RS05120 0.30 -0.3
160,713 - EX31_RS05120 0.30 +0.1
160,713 - EX31_RS05120 0.30 +1.7
160,718 - EX31_RS05120 0.31 +0.4
160,739 + EX31_RS05120 0.32 +0.6
160,739 + EX31_RS05120 0.32 +0.4
160,739 + EX31_RS05120 0.32 +1.3
160,739 + EX31_RS05120 0.32 +1.5
160,740 - EX31_RS05120 0.32 +0.2
160,740 - EX31_RS05120 0.32 -0.6
160,742 + EX31_RS05120 0.33 +0.2
160,743 - EX31_RS05120 0.33 +0.1
160,743 - EX31_RS05120 0.33 +0.1
160,828 + EX31_RS05120 0.39 -0.1
160,837 - EX31_RS05120 0.40 -0.1
160,894 + EX31_RS05120 0.45 +1.1
160,899 + EX31_RS05120 0.45 -1.1
160,899 + EX31_RS05120 0.45 -0.7
160,937 + EX31_RS05120 0.48 +0.1
160,939 + EX31_RS05120 0.48 -1.2
160,939 + EX31_RS05120 0.48 -0.0
160,959 + EX31_RS05120 0.50 +0.5
160,965 - EX31_RS05120 0.50 -3.3
161,013 - EX31_RS05120 0.54 -0.5
161,044 + EX31_RS05120 0.57 +0.8
161,045 - EX31_RS05120 0.57 +0.6
161,045 - EX31_RS05120 0.57 +0.6
161,045 - EX31_RS05120 0.57 -0.4
161,062 + EX31_RS05120 0.58 +0.4
161,062 + EX31_RS05120 0.58 -0.3
161,063 - EX31_RS05120 0.58 -2.3
161,063 - EX31_RS05120 0.58 -1.0
161,063 - EX31_RS05120 0.58 -0.6
161,064 + EX31_RS05120 0.58 -0.1
161,064 + EX31_RS05120 0.58 +1.3
161,064 + EX31_RS05120 0.58 +0.4
161,064 + EX31_RS05120 0.58 +1.4
161,064 + EX31_RS05120 0.58 -0.4
161,064 + EX31_RS05120 0.58 -1.3
161,064 + EX31_RS05120 0.58 -0.2
161,064 + EX31_RS05120 0.58 +0.5
161,065 - EX31_RS05120 0.58 +0.3
161,065 - EX31_RS05120 0.58 -0.1
161,065 - EX31_RS05120 0.58 -1.3
161,065 - EX31_RS05120 0.58 -1.0
161,065 - EX31_RS05120 0.58 +0.3
161,065 - EX31_RS05120 0.58 -0.8
161,065 - EX31_RS05120 0.58 +1.4
161,065 - EX31_RS05120 0.58 +0.3
161,065 - EX31_RS05120 0.58 -0.3
161,065 - EX31_RS05120 0.58 -0.2
161,065 - EX31_RS05120 0.58 +1.3
161,065 - EX31_RS05120 0.58 -0.3
161,065 - EX31_RS05120 0.58 +0.3
161,069 - EX31_RS05120 0.59 +0.7
161,069 - EX31_RS05120 0.59 +0.9
161,069 - EX31_RS05120 0.59 -0.2
161,090 + EX31_RS05120 0.60 +0.3
161,090 + EX31_RS05120 0.60 -0.9
161,091 - EX31_RS05120 0.60 +1.9
161,091 - EX31_RS05120 0.60 +0.4
161,126 + EX31_RS05120 0.63 +0.9
161,127 - EX31_RS05120 0.63 +0.3
161,127 - EX31_RS05120 0.63 +0.4
161,127 - EX31_RS05120 0.63 -0.9
161,127 - EX31_RS05120 0.63 -0.1
161,127 - EX31_RS05120 0.63 -0.6
161,153 + EX31_RS05120 0.65 +0.1
161,153 + EX31_RS05120 0.65 -0.4
161,154 - EX31_RS05120 0.65 +0.3
161,154 - EX31_RS05120 0.65 -0.5
161,193 + EX31_RS05120 0.69 -0.2
161,193 + EX31_RS05120 0.69 -0.3
161,193 + EX31_RS05120 0.69 +0.2
161,221 - EX31_RS05120 0.71 -0.9
161,221 - EX31_RS05120 0.71 -1.4
161,221 - EX31_RS05120 0.71 -1.1
161,315 - EX31_RS05120 0.78 +0.2
161,315 - EX31_RS05120 0.78 -3.3
161,333 + EX31_RS05120 0.80 +0.4
161,333 + EX31_RS05120 0.80 -0.7
161,334 - EX31_RS05120 0.80 -0.8
161,334 - EX31_RS05120 0.80 +1.6
161,336 - EX31_RS05120 0.80 -0.1
161,341 + EX31_RS05120 0.80 -0.0
161,416 + EX31_RS05120 0.86 +0.6
161,460 - EX31_RS05120 0.90 -0.6
161,553 + -1.1
161,553 + +0.0
161,554 - +0.5
161,596 + -1.2
161,596 + +0.3
161,597 - +0.5
161,597 - +0.2
161,597 - -0.3
161,599 - +0.3
161,599 - +0.5
161,608 + EX31_RS05125 0.11 +0.4
161,609 - EX31_RS05125 0.11 -0.8
161,609 - EX31_RS05125 0.11 +0.8
161,624 - EX31_RS05125 0.17 -2.6
161,624 - EX31_RS05125 0.17 -0.2
161,624 - EX31_RS05125 0.17 -0.3
161,700 - EX31_RS05125 0.49 -0.1
161,777 + EX31_RS05125 0.80 -0.9
161,816 + -0.5
161,980 + +0.6
161,980 + +1.0
161,980 + +0.2
161,980 + -0.1
161,981 - -2.1
162,003 + -0.0
162,004 - -0.3
162,004 - -0.5
162,092 + -0.7
162,106 + -3.8
162,121 + +0.2
162,121 + +0.0
162,121 + -0.2
162,122 - -0.1
162,122 - -0.4
162,133 + +0.5
162,140 - +0.1
162,154 + EX31_RS05130 0.10 +0.3
162,155 - EX31_RS05130 0.11 -0.4
162,155 - EX31_RS05130 0.11 -0.6
162,173 + EX31_RS05130 0.12 +0.2
162,173 + EX31_RS05130 0.12 -0.3
162,173 + EX31_RS05130 0.12 +0.9
162,173 + EX31_RS05130 0.12 +0.7
162,174 - EX31_RS05130 0.12 +0.5
162,174 - EX31_RS05130 0.12 -0.9
162,174 - EX31_RS05130 0.12 -0.2
162,175 + EX31_RS05130 0.12 -0.2
162,175 + EX31_RS05130 0.12 -0.7
162,176 - EX31_RS05130 0.12 -0.9
162,176 - EX31_RS05130 0.12 +0.5
162,176 - EX31_RS05130 0.12 -0.6
162,176 - EX31_RS05130 0.12 -0.2
162,196 + EX31_RS05130 0.13 +0.4
162,197 - EX31_RS05130 0.13 +0.0
162,216 + EX31_RS05130 0.14 -1.3
162,216 + EX31_RS05130 0.14 +0.4
162,217 - EX31_RS05130 0.14 +0.4
162,266 + EX31_RS05130 0.17 +0.6
162,266 + EX31_RS05130 0.17 -1.2
162,267 - EX31_RS05130 0.17 +0.4
162,267 - EX31_RS05130 0.17 -0.7
162,267 - EX31_RS05130 0.17 -1.4
162,270 - EX31_RS05130 0.17 +0.8
162,331 + EX31_RS05130 0.21 +0.7
162,475 + EX31_RS05130 0.30 -0.4
162,475 + EX31_RS05130 0.30 +1.2
162,475 + EX31_RS05130 0.30 -0.1
162,475 + EX31_RS05130 0.30 -5.0
162,476 - EX31_RS05130 0.30 +0.5
162,476 - EX31_RS05130 0.30 -1.4
162,480 + EX31_RS05130 0.30 +0.4
162,480 + EX31_RS05130 0.30 +0.7
162,480 + EX31_RS05130 0.30 -2.1
162,481 - EX31_RS05130 0.30 +0.3
162,481 - EX31_RS05130 0.30 -0.2
162,481 - EX31_RS05130 0.30 -0.6
162,484 + EX31_RS05130 0.30 +0.4
162,485 - EX31_RS05130 0.30 +0.9
162,485 - EX31_RS05130 0.30 +0.5
162,485 - EX31_RS05130 0.30 -0.2
162,485 - EX31_RS05130 0.30 -1.5
162,485 - EX31_RS05130 0.30 +0.1
162,562 - EX31_RS05130 0.35 -0.9
162,562 - EX31_RS05130 0.35 -0.3
162,571 + EX31_RS05130 0.36 -0.2

Or see this region's nucleotide sequence