Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04525 and EX31_RS04530 are separated by 9 nucleotides EX31_RS04530 and EX31_RS04535 overlap by 4 nucleotides EX31_RS04535 and EX31_RS04540 are separated by 33 nucleotides
EX31_RS04525: EX31_RS04525 - carbamate kinase, at 14,780 to 15,679
_RS04525
EX31_RS04530: EX31_RS04530 - DUF2877 domain-containing protein, at 15,689 to 16,450
_RS04530
EX31_RS04535: EX31_RS04535 - DUF1116 domain-containing protein, at 16,447 to 17,715
_RS04535
EX31_RS04540: EX31_RS04540 - acyl-CoA synthetase FdrA, at 17,749 to 19,416
_RS04540
Position (kb) 16
17
18 Strain fitness (log2 ratio) -2
-1
0
1
2 at 15.484 kb on + strand, within EX31_RS04525 at 15.486 kb on + strand, within EX31_RS04525 at 15.486 kb on + strand, within EX31_RS04525 at 15.486 kb on + strand, within EX31_RS04525 at 15.486 kb on + strand, within EX31_RS04525 at 15.487 kb on - strand, within EX31_RS04525 at 15.487 kb on - strand, within EX31_RS04525 at 15.487 kb on - strand, within EX31_RS04525 at 15.487 kb on - strand, within EX31_RS04525 at 15.487 kb on - strand, within EX31_RS04525 at 15.487 kb on - strand, within EX31_RS04525 at 15.500 kb on + strand, within EX31_RS04525 at 15.500 kb on + strand, within EX31_RS04525 at 15.501 kb on - strand, within EX31_RS04525 at 15.638 kb on + strand at 15.638 kb on + strand at 15.638 kb on + strand at 15.639 kb on - strand at 15.639 kb on - strand at 15.649 kb on + strand at 15.669 kb on - strand at 15.849 kb on + strand, within EX31_RS04530 at 15.892 kb on + strand, within EX31_RS04530 at 15.892 kb on + strand, within EX31_RS04530 at 15.892 kb on + strand, within EX31_RS04530 at 15.892 kb on + strand, within EX31_RS04530 at 15.892 kb on + strand, within EX31_RS04530 at 15.892 kb on + strand, within EX31_RS04530 at 15.892 kb on + strand, within EX31_RS04530 at 15.893 kb on - strand, within EX31_RS04530 at 15.893 kb on - strand, within EX31_RS04530 at 15.893 kb on - strand, within EX31_RS04530 at 15.893 kb on - strand, within EX31_RS04530 at 15.893 kb on - strand, within EX31_RS04530 at 15.893 kb on - strand, within EX31_RS04530 at 15.893 kb on - strand, within EX31_RS04530 at 15.893 kb on - strand, within EX31_RS04530 at 15.992 kb on - strand, within EX31_RS04530 at 15.998 kb on + strand, within EX31_RS04530 at 15.998 kb on + strand, within EX31_RS04530 at 15.999 kb on - strand, within EX31_RS04530 at 15.999 kb on - strand, within EX31_RS04530 at 15.999 kb on - strand, within EX31_RS04530 at 16.040 kb on + strand, within EX31_RS04530 at 16.040 kb on + strand, within EX31_RS04530 at 16.040 kb on + strand, within EX31_RS04530 at 16.040 kb on + strand, within EX31_RS04530 at 16.041 kb on - strand, within EX31_RS04530 at 16.055 kb on - strand, within EX31_RS04530 at 16.117 kb on + strand, within EX31_RS04530 at 16.152 kb on + strand, within EX31_RS04530 at 16.152 kb on + strand, within EX31_RS04530 at 16.153 kb on - strand, within EX31_RS04530 at 16.153 kb on - strand, within EX31_RS04530 at 16.153 kb on - strand, within EX31_RS04530 at 16.153 kb on - strand, within EX31_RS04530 at 16.159 kb on - strand, within EX31_RS04530 at 16.181 kb on + strand, within EX31_RS04530 at 16.181 kb on + strand, within EX31_RS04530 at 16.181 kb on + strand, within EX31_RS04530 at 16.182 kb on - strand, within EX31_RS04530 at 16.182 kb on - strand, within EX31_RS04530 at 16.182 kb on - strand, within EX31_RS04530 at 16.182 kb on - strand, within EX31_RS04530 at 16.259 kb on + strand, within EX31_RS04530 at 16.260 kb on - strand, within EX31_RS04530 at 16.318 kb on - strand, within EX31_RS04530 at 16.406 kb on + strand at 16.407 kb on - strand at 16.407 kb on - strand at 16.407 kb on - strand at 16.407 kb on - strand at 16.407 kb on - strand at 16.407 kb on - strand at 16.444 kb on + strand at 16.451 kb on - strand at 16.522 kb on + strand at 16.522 kb on + strand at 16.522 kb on + strand at 16.523 kb on - strand at 16.578 kb on + strand, within EX31_RS04535 at 16.848 kb on - strand, within EX31_RS04535 at 16.875 kb on + strand, within EX31_RS04535 at 16.876 kb on - strand, within EX31_RS04535 at 16.876 kb on - strand, within EX31_RS04535 at 17.046 kb on + strand, within EX31_RS04535 at 17.046 kb on + strand, within EX31_RS04535 at 17.047 kb on - strand, within EX31_RS04535 at 17.119 kb on - strand, within EX31_RS04535 at 17.119 kb on - strand, within EX31_RS04535 at 17.176 kb on - strand, within EX31_RS04535 at 17.176 kb on - strand, within EX31_RS04535 at 17.176 kb on - strand, within EX31_RS04535 at 17.297 kb on + strand, within EX31_RS04535 at 17.298 kb on - strand, within EX31_RS04535 at 17.466 kb on + strand, within EX31_RS04535 at 17.466 kb on + strand, within EX31_RS04535 at 17.467 kb on - strand, within EX31_RS04535 at 17.467 kb on - strand, within EX31_RS04535 at 17.715 kb on + strand at 17.764 kb on + strand at 17.765 kb on - strand at 17.813 kb on + strand at 17.814 kb on - strand at 17.937 kb on + strand, within EX31_RS04540 at 17.937 kb on + strand, within EX31_RS04540 at 17.938 kb on - strand, within EX31_RS04540 at 17.938 kb on - strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.941 kb on + strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 17.942 kb on - strand, within EX31_RS04540 at 18.008 kb on - strand, within EX31_RS04540 at 18.579 kb on + strand, within EX31_RS04540 at 18.580 kb on - strand, within EX31_RS04540 at 18.585 kb on + strand, within EX31_RS04540 at 18.585 kb on + strand, within EX31_RS04540 at 18.585 kb on + strand, within EX31_RS04540 at 18.585 kb on + strand, within EX31_RS04540
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 15,484 + EX31_RS04525 0.78 -0.3 15,486 + EX31_RS04525 0.78 -0.1 15,486 + EX31_RS04525 0.78 -0.1 15,486 + EX31_RS04525 0.78 +0.2 15,486 + EX31_RS04525 0.78 +1.3 15,487 - EX31_RS04525 0.79 +1.9 15,487 - EX31_RS04525 0.79 -1.8 15,487 - EX31_RS04525 0.79 +0.8 15,487 - EX31_RS04525 0.79 -0.7 15,487 - EX31_RS04525 0.79 +0.9 15,487 - EX31_RS04525 0.79 -0.1 15,500 + EX31_RS04525 0.80 +0.6 15,500 + EX31_RS04525 0.80 -2.0 15,501 - EX31_RS04525 0.80 +0.0 15,638 + +1.6 15,638 + -2.0 15,638 + -1.2 15,639 - +0.8 15,639 - +0.5 15,649 + -0.2 15,669 - +0.2 15,849 + EX31_RS04530 0.21 -0.0 15,892 + EX31_RS04530 0.27 +0.4 15,892 + EX31_RS04530 0.27 +1.0 15,892 + EX31_RS04530 0.27 +0.1 15,892 + EX31_RS04530 0.27 -0.3 15,892 + EX31_RS04530 0.27 +0.9 15,892 + EX31_RS04530 0.27 +1.2 15,892 + EX31_RS04530 0.27 +1.3 15,893 - EX31_RS04530 0.27 -0.4 15,893 - EX31_RS04530 0.27 +1.1 15,893 - EX31_RS04530 0.27 -0.3 15,893 - EX31_RS04530 0.27 +0.1 15,893 - EX31_RS04530 0.27 -0.6 15,893 - EX31_RS04530 0.27 +1.3 15,893 - EX31_RS04530 0.27 +1.1 15,893 - EX31_RS04530 0.27 -0.3 15,992 - EX31_RS04530 0.40 -0.2 15,998 + EX31_RS04530 0.41 +0.6 15,998 + EX31_RS04530 0.41 +0.6 15,999 - EX31_RS04530 0.41 -0.1 15,999 - EX31_RS04530 0.41 -0.9 15,999 - EX31_RS04530 0.41 -0.3 16,040 + EX31_RS04530 0.46 -0.4 16,040 + EX31_RS04530 0.46 +0.3 16,040 + EX31_RS04530 0.46 -1.4 16,040 + EX31_RS04530 0.46 +1.0 16,041 - EX31_RS04530 0.46 +0.1 16,055 - EX31_RS04530 0.48 +0.2 16,117 + EX31_RS04530 0.56 -0.3 16,152 + EX31_RS04530 0.61 -0.1 16,152 + EX31_RS04530 0.61 -0.5 16,153 - EX31_RS04530 0.61 -1.1 16,153 - EX31_RS04530 0.61 -0.3 16,153 - EX31_RS04530 0.61 -0.3 16,153 - EX31_RS04530 0.61 -0.8 16,159 - EX31_RS04530 0.62 +0.4 16,181 + EX31_RS04530 0.65 -0.6 16,181 + EX31_RS04530 0.65 +0.1 16,181 + EX31_RS04530 0.65 +0.6 16,182 - EX31_RS04530 0.65 +0.3 16,182 - EX31_RS04530 0.65 +0.7 16,182 - EX31_RS04530 0.65 +0.8 16,182 - EX31_RS04530 0.65 -0.4 16,259 + EX31_RS04530 0.75 +1.6 16,260 - EX31_RS04530 0.75 -0.6 16,318 - EX31_RS04530 0.83 +0.5 16,406 + -0.1 16,407 - +0.7 16,407 - -0.1 16,407 - +0.5 16,407 - +0.3 16,407 - +0.2 16,407 - +0.0 16,444 + -0.9 16,451 - +0.5 16,522 + +0.2 16,522 + -1.9 16,522 + -0.8 16,523 - -0.4 16,578 + EX31_RS04535 0.10 +0.2 16,848 - EX31_RS04535 0.32 -0.1 16,875 + EX31_RS04535 0.34 +0.0 16,876 - EX31_RS04535 0.34 -0.0 16,876 - EX31_RS04535 0.34 +0.7 17,046 + EX31_RS04535 0.47 -0.0 17,046 + EX31_RS04535 0.47 -0.2 17,047 - EX31_RS04535 0.47 -1.2 17,119 - EX31_RS04535 0.53 +0.7 17,119 - EX31_RS04535 0.53 +0.7 17,176 - EX31_RS04535 0.57 +0.5 17,176 - EX31_RS04535 0.57 +0.5 17,176 - EX31_RS04535 0.57 -0.1 17,297 + EX31_RS04535 0.67 +0.5 17,298 - EX31_RS04535 0.67 +0.5 17,466 + EX31_RS04535 0.80 -0.1 17,466 + EX31_RS04535 0.80 +1.0 17,467 - EX31_RS04535 0.80 +0.5 17,467 - EX31_RS04535 0.80 -0.1 17,715 + +0.1 17,764 + -1.6 17,765 - -2.2 17,813 + -0.2 17,814 - +0.0 17,937 + EX31_RS04540 0.11 -0.0 17,937 + EX31_RS04540 0.11 +0.0 17,938 - EX31_RS04540 0.11 -0.5 17,938 - EX31_RS04540 0.11 +0.7 17,941 + EX31_RS04540 0.12 +0.4 17,941 + EX31_RS04540 0.12 -0.2 17,941 + EX31_RS04540 0.12 -0.1 17,941 + EX31_RS04540 0.12 -0.3 17,941 + EX31_RS04540 0.12 +0.7 17,941 + EX31_RS04540 0.12 -0.6 17,941 + EX31_RS04540 0.12 +0.5 17,941 + EX31_RS04540 0.12 -0.6 17,941 + EX31_RS04540 0.12 +0.6 17,941 + EX31_RS04540 0.12 -0.3 17,941 + EX31_RS04540 0.12 -1.5 17,941 + EX31_RS04540 0.12 -0.8 17,941 + EX31_RS04540 0.12 -0.6 17,941 + EX31_RS04540 0.12 +0.5 17,941 + EX31_RS04540 0.12 -0.9 17,941 + EX31_RS04540 0.12 +0.3 17,941 + EX31_RS04540 0.12 -0.1 17,941 + EX31_RS04540 0.12 -0.6 17,941 + EX31_RS04540 0.12 +0.0 17,941 + EX31_RS04540 0.12 +0.8 17,941 + EX31_RS04540 0.12 +0.1 17,941 + EX31_RS04540 0.12 +0.0 17,941 + EX31_RS04540 0.12 -0.4 17,942 - EX31_RS04540 0.12 +0.7 17,942 - EX31_RS04540 0.12 +0.0 17,942 - EX31_RS04540 0.12 +0.1 17,942 - EX31_RS04540 0.12 +0.1 17,942 - EX31_RS04540 0.12 +0.4 17,942 - EX31_RS04540 0.12 +0.4 17,942 - EX31_RS04540 0.12 +0.4 17,942 - EX31_RS04540 0.12 +0.8 17,942 - EX31_RS04540 0.12 +0.4 17,942 - EX31_RS04540 0.12 -0.9 17,942 - EX31_RS04540 0.12 +0.4 17,942 - EX31_RS04540 0.12 -1.6 17,942 - EX31_RS04540 0.12 +0.2 17,942 - EX31_RS04540 0.12 +0.2 17,942 - EX31_RS04540 0.12 +1.3 17,942 - EX31_RS04540 0.12 -0.6 17,942 - EX31_RS04540 0.12 -0.2 17,942 - EX31_RS04540 0.12 -0.6 17,942 - EX31_RS04540 0.12 +1.1 17,942 - EX31_RS04540 0.12 +1.3 17,942 - EX31_RS04540 0.12 -0.1 17,942 - EX31_RS04540 0.12 -0.1 17,942 - EX31_RS04540 0.12 -1.8 17,942 - EX31_RS04540 0.12 -0.0 18,008 - EX31_RS04540 0.16 -2.1 18,579 + EX31_RS04540 0.50 +1.1 18,580 - EX31_RS04540 0.50 +0.0 18,585 + EX31_RS04540 0.50 -0.8 18,585 + EX31_RS04540 0.50 -0.1 18,585 + EX31_RS04540 0.50 -0.7 18,585 + EX31_RS04540 0.50 -0.1
Or see this region's nucleotide sequence