Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02600 and EX31_RS02605 are separated by 140 nucleotides EX31_RS02605 and EX31_RS02610 are separated by 397 nucleotides
EX31_RS02600: EX31_RS02600 - ABC transporter substrate-binding protein, at 551,612 to 553,171
_RS02600
EX31_RS02605: EX31_RS02605 - LysR family transcriptional regulator, at 553,312 to 554,199
_RS02605
EX31_RS02610: EX31_RS02610 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 554,597 to 557,074
_RS02610
Position (kb) 553
554
555 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 552.365 kb on + strand, within EX31_RS02600 at 552.366 kb on - strand, within EX31_RS02600 at 552.366 kb on - strand, within EX31_RS02600 at 552.369 kb on + strand, within EX31_RS02600 at 552.369 kb on + strand, within EX31_RS02600 at 552.376 kb on + strand, within EX31_RS02600 at 552.377 kb on - strand, within EX31_RS02600 at 552.460 kb on + strand, within EX31_RS02600 at 552.461 kb on - strand, within EX31_RS02600 at 552.461 kb on - strand, within EX31_RS02600 at 552.530 kb on - strand, within EX31_RS02600 at 552.688 kb on + strand, within EX31_RS02600 at 552.689 kb on - strand, within EX31_RS02600 at 552.689 kb on - strand, within EX31_RS02600 at 552.689 kb on - strand, within EX31_RS02600 at 552.701 kb on + strand, within EX31_RS02600 at 552.702 kb on - strand, within EX31_RS02600 at 552.709 kb on + strand, within EX31_RS02600 at 552.709 kb on + strand, within EX31_RS02600 at 552.710 kb on - strand, within EX31_RS02600 at 552.710 kb on - strand, within EX31_RS02600 at 552.710 kb on - strand, within EX31_RS02600 at 552.710 kb on - strand, within EX31_RS02600 at 552.713 kb on + strand, within EX31_RS02600 at 552.713 kb on + strand, within EX31_RS02600 at 552.713 kb on + strand, within EX31_RS02600 at 552.713 kb on + strand, within EX31_RS02600 at 552.714 kb on - strand, within EX31_RS02600 at 552.714 kb on - strand, within EX31_RS02600 at 552.716 kb on + strand, within EX31_RS02600 at 552.716 kb on + strand, within EX31_RS02600 at 552.717 kb on - strand, within EX31_RS02600 at 552.793 kb on - strand, within EX31_RS02600 at 552.793 kb on - strand, within EX31_RS02600 at 552.800 kb on - strand, within EX31_RS02600 at 552.800 kb on - strand, within EX31_RS02600 at 552.802 kb on - strand, within EX31_RS02600 at 552.966 kb on - strand, within EX31_RS02600 at 553.004 kb on + strand, within EX31_RS02600 at 553.004 kb on + strand, within EX31_RS02600 at 553.005 kb on - strand, within EX31_RS02600 at 553.041 kb on + strand at 553.057 kb on + strand at 553.087 kb on + strand at 553.088 kb on - strand at 553.088 kb on - strand at 553.088 kb on - strand at 553.104 kb on - strand at 553.177 kb on + strand at 553.177 kb on + strand at 553.189 kb on - strand at 553.189 kb on - strand at 553.189 kb on - strand at 553.189 kb on - strand at 553.213 kb on - strand at 553.223 kb on - strand at 553.235 kb on - strand at 553.282 kb on - strand at 553.311 kb on + strand at 553.334 kb on + strand at 553.335 kb on - strand at 553.531 kb on + strand, within EX31_RS02605 at 553.531 kb on + strand, within EX31_RS02605 at 553.548 kb on + strand, within EX31_RS02605 at 553.548 kb on + strand, within EX31_RS02605 at 553.548 kb on + strand, within EX31_RS02605 at 553.549 kb on - strand, within EX31_RS02605 at 553.549 kb on - strand, within EX31_RS02605 at 553.549 kb on - strand, within EX31_RS02605 at 553.549 kb on - strand, within EX31_RS02605 at 553.549 kb on - strand, within EX31_RS02605 at 553.549 kb on - strand, within EX31_RS02605 at 553.549 kb on - strand, within EX31_RS02605 at 553.549 kb on - strand, within EX31_RS02605 at 553.557 kb on + strand, within EX31_RS02605 at 553.571 kb on + strand, within EX31_RS02605 at 553.572 kb on - strand, within EX31_RS02605 at 553.572 kb on - strand, within EX31_RS02605 at 553.572 kb on - strand, within EX31_RS02605 at 553.572 kb on - strand, within EX31_RS02605 at 553.665 kb on + strand, within EX31_RS02605 at 553.674 kb on + strand, within EX31_RS02605 at 553.675 kb on - strand, within EX31_RS02605 at 553.890 kb on + strand, within EX31_RS02605 at 553.893 kb on + strand, within EX31_RS02605 at 553.893 kb on + strand, within EX31_RS02605 at 553.894 kb on - strand, within EX31_RS02605 at 553.894 kb on - strand, within EX31_RS02605 at 553.894 kb on - strand, within EX31_RS02605 at 553.896 kb on - strand, within EX31_RS02605 at 553.955 kb on + strand, within EX31_RS02605 at 553.955 kb on + strand, within EX31_RS02605 at 553.955 kb on + strand, within EX31_RS02605 at 553.955 kb on + strand, within EX31_RS02605 at 553.956 kb on - strand, within EX31_RS02605 at 553.956 kb on - strand, within EX31_RS02605 at 553.956 kb on - strand, within EX31_RS02605 at 553.956 kb on - strand, within EX31_RS02605 at 553.956 kb on - strand, within EX31_RS02605 at 553.957 kb on + strand, within EX31_RS02605 at 553.957 kb on + strand, within EX31_RS02605 at 553.957 kb on + strand, within EX31_RS02605 at 553.957 kb on + strand, within EX31_RS02605 at 553.957 kb on + strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.960 kb on - strand, within EX31_RS02605 at 553.960 kb on - strand, within EX31_RS02605 at 554.157 kb on + strand at 554.157 kb on + strand at 554.158 kb on - strand at 554.180 kb on + strand at 554.180 kb on + strand at 554.180 kb on + strand at 554.191 kb on + strand at 554.426 kb on + strand at 554.473 kb on + strand at 554.473 kb on + strand at 554.525 kb on + strand at 554.526 kb on - strand at 554.526 kb on - strand at 554.557 kb on + strand at 554.557 kb on + strand at 554.557 kb on + strand at 554.557 kb on + strand at 554.557 kb on + strand at 554.558 kb on - strand at 554.558 kb on - strand at 554.558 kb on - strand at 554.564 kb on + strand at 554.564 kb on + strand at 554.564 kb on + strand at 554.571 kb on + strand at 554.611 kb on + strand at 554.690 kb on + strand at 554.690 kb on + strand at 554.691 kb on - strand at 554.691 kb on - strand at 554.703 kb on + strand at 554.703 kb on + strand at 554.704 kb on - strand at 554.717 kb on + strand at 554.774 kb on - strand at 554.818 kb on + strand at 554.818 kb on + strand at 554.822 kb on - strand at 554.953 kb on + strand, within EX31_RS02610 at 555.016 kb on + strand, within EX31_RS02610 at 555.016 kb on + strand, within EX31_RS02610 at 555.017 kb on - strand, within EX31_RS02610 at 555.079 kb on + strand, within EX31_RS02610 at 555.079 kb on + strand, within EX31_RS02610 at 555.080 kb on - strand, within EX31_RS02610 at 555.080 kb on - strand, within EX31_RS02610
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 552,365 + EX31_RS02600 0.48 -2.5 552,366 - EX31_RS02600 0.48 +0.1 552,366 - EX31_RS02600 0.48 +0.5 552,369 + EX31_RS02600 0.49 -0.2 552,369 + EX31_RS02600 0.49 +1.0 552,376 + EX31_RS02600 0.49 -0.3 552,377 - EX31_RS02600 0.49 +1.5 552,460 + EX31_RS02600 0.54 -0.5 552,461 - EX31_RS02600 0.54 -1.4 552,461 - EX31_RS02600 0.54 +0.6 552,530 - EX31_RS02600 0.59 +0.0 552,688 + EX31_RS02600 0.69 +0.4 552,689 - EX31_RS02600 0.69 +0.9 552,689 - EX31_RS02600 0.69 -0.3 552,689 - EX31_RS02600 0.69 +0.9 552,701 + EX31_RS02600 0.70 -0.7 552,702 - EX31_RS02600 0.70 -0.7 552,709 + EX31_RS02600 0.70 +1.6 552,709 + EX31_RS02600 0.70 -1.7 552,710 - EX31_RS02600 0.70 -0.3 552,710 - EX31_RS02600 0.70 +1.2 552,710 - EX31_RS02600 0.70 -0.4 552,710 - EX31_RS02600 0.70 +1.2 552,713 + EX31_RS02600 0.71 -1.9 552,713 + EX31_RS02600 0.71 -0.3 552,713 + EX31_RS02600 0.71 +1.1 552,713 + EX31_RS02600 0.71 +1.1 552,714 - EX31_RS02600 0.71 -1.8 552,714 - EX31_RS02600 0.71 +0.6 552,716 + EX31_RS02600 0.71 +0.1 552,716 + EX31_RS02600 0.71 +0.2 552,717 - EX31_RS02600 0.71 -0.1 552,793 - EX31_RS02600 0.76 -1.5 552,793 - EX31_RS02600 0.76 +0.9 552,800 - EX31_RS02600 0.76 +0.7 552,800 - EX31_RS02600 0.76 +0.7 552,802 - EX31_RS02600 0.76 +0.7 552,966 - EX31_RS02600 0.87 +0.9 553,004 + EX31_RS02600 0.89 -0.7 553,004 + EX31_RS02600 0.89 -2.1 553,005 - EX31_RS02600 0.89 +1.2 553,041 + +0.1 553,057 + -0.2 553,087 + -0.5 553,088 - +0.2 553,088 - +0.4 553,088 - +1.3 553,104 - +0.2 553,177 + +0.3 553,177 + -0.3 553,189 - +0.6 553,189 - +1.1 553,189 - -0.4 553,189 - -1.0 553,213 - -2.5 553,223 - -1.3 553,235 - +0.2 553,282 - +1.4 553,311 + -0.9 553,334 + -1.4 553,335 - +0.8 553,531 + EX31_RS02605 0.25 +1.2 553,531 + EX31_RS02605 0.25 -0.4 553,548 + EX31_RS02605 0.27 -0.0 553,548 + EX31_RS02605 0.27 +0.9 553,548 + EX31_RS02605 0.27 -0.7 553,549 - EX31_RS02605 0.27 -2.0 553,549 - EX31_RS02605 0.27 +0.4 553,549 - EX31_RS02605 0.27 -0.5 553,549 - EX31_RS02605 0.27 +0.9 553,549 - EX31_RS02605 0.27 +0.9 553,549 - EX31_RS02605 0.27 +0.9 553,549 - EX31_RS02605 0.27 +0.1 553,549 - EX31_RS02605 0.27 +1.4 553,557 + EX31_RS02605 0.28 -0.4 553,571 + EX31_RS02605 0.29 -0.4 553,572 - EX31_RS02605 0.29 -0.1 553,572 - EX31_RS02605 0.29 -0.5 553,572 - EX31_RS02605 0.29 -2.9 553,572 - EX31_RS02605 0.29 +1.0 553,665 + EX31_RS02605 0.40 -2.1 553,674 + EX31_RS02605 0.41 +0.1 553,675 - EX31_RS02605 0.41 +0.6 553,890 + EX31_RS02605 0.65 -0.0 553,893 + EX31_RS02605 0.65 +0.4 553,893 + EX31_RS02605 0.65 -2.2 553,894 - EX31_RS02605 0.66 -0.1 553,894 - EX31_RS02605 0.66 -1.8 553,894 - EX31_RS02605 0.66 +1.7 553,896 - EX31_RS02605 0.66 +0.3 553,955 + EX31_RS02605 0.72 -0.9 553,955 + EX31_RS02605 0.72 +0.5 553,955 + EX31_RS02605 0.72 +0.3 553,955 + EX31_RS02605 0.72 -1.9 553,956 - EX31_RS02605 0.73 -0.5 553,956 - EX31_RS02605 0.73 +0.2 553,956 - EX31_RS02605 0.73 +0.4 553,956 - EX31_RS02605 0.73 +0.4 553,956 - EX31_RS02605 0.73 +0.5 553,957 + EX31_RS02605 0.73 -1.6 553,957 + EX31_RS02605 0.73 +0.7 553,957 + EX31_RS02605 0.73 +0.5 553,957 + EX31_RS02605 0.73 -0.2 553,957 + EX31_RS02605 0.73 -0.1 553,958 - EX31_RS02605 0.73 -0.7 553,958 - EX31_RS02605 0.73 +0.2 553,958 - EX31_RS02605 0.73 -1.5 553,958 - EX31_RS02605 0.73 +0.3 553,958 - EX31_RS02605 0.73 -0.0 553,958 - EX31_RS02605 0.73 -0.0 553,958 - EX31_RS02605 0.73 -0.6 553,958 - EX31_RS02605 0.73 -0.7 553,958 - EX31_RS02605 0.73 +0.7 553,959 + EX31_RS02605 0.73 -1.9 553,959 + EX31_RS02605 0.73 -0.6 553,959 + EX31_RS02605 0.73 -3.0 553,959 + EX31_RS02605 0.73 +0.9 553,959 + EX31_RS02605 0.73 +2.3 553,959 + EX31_RS02605 0.73 +0.7 553,959 + EX31_RS02605 0.73 +0.1 553,959 + EX31_RS02605 0.73 -1.5 553,959 + EX31_RS02605 0.73 -0.6 553,959 + EX31_RS02605 0.73 -0.7 553,959 + EX31_RS02605 0.73 -0.9 553,960 - EX31_RS02605 0.73 +1.5 553,960 - EX31_RS02605 0.73 +0.4 554,157 + -1.3 554,157 + -0.7 554,158 - -0.4 554,180 + +0.9 554,180 + -1.4 554,180 + -0.1 554,191 + +2.2 554,426 + +0.2 554,473 + +0.4 554,473 + -0.7 554,525 + -1.3 554,526 - -0.7 554,526 - -0.8 554,557 + +1.1 554,557 + -0.8 554,557 + -0.3 554,557 + +0.3 554,557 + +2.4 554,558 - -2.1 554,558 - +0.2 554,558 - +0.3 554,564 + +0.4 554,564 + -1.2 554,564 + +0.8 554,571 + +0.1 554,611 + -0.9 554,690 + +0.1 554,690 + -1.8 554,691 - +1.0 554,691 - -0.0 554,703 + +0.5 554,703 + +0.4 554,704 - -0.2 554,717 + -0.1 554,774 - -0.4 554,818 + +0.7 554,818 + -0.1 554,822 - +1.3 554,953 + EX31_RS02610 0.14 -1.5 555,016 + EX31_RS02610 0.17 -0.6 555,016 + EX31_RS02610 0.17 -0.8 555,017 - EX31_RS02610 0.17 +0.2 555,079 + EX31_RS02610 0.19 -1.3 555,079 + EX31_RS02610 0.19 +0.0 555,080 - EX31_RS02610 0.19 -1.0 555,080 - EX31_RS02610 0.19 -1.1
Or see this region's nucleotide sequence