Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01685 and EX31_RS01690 are separated by 10 nucleotides EX31_RS01690 and EX31_RS01695 are separated by 117 nucleotides EX31_RS01695 and EX31_RS01700 overlap by 10 nucleotides EX31_RS01700 and EX31_RS01705 are separated by 147 nucleotides
EX31_RS01685: EX31_RS01685 - DUF968 domain-containing protein, at 371,132 to 372,145
_RS01685
EX31_RS01690: EX31_RS01690 - KilA-N domain-containing protein, at 372,156 to 372,968
_RS01690
EX31_RS01695: EX31_RS01695 - RusA family crossover junction endodeoxyribonuclease, at 373,086 to 373,451
_RS01695
EX31_RS01700: EX31_RS01700 - chromosome partitioning protein ParB, at 373,442 to 373,795
_RS01700
EX31_RS01705: EX31_RS01705 - site-specific DNA-methyltransferase, at 373,943 to 375,067
_RS01705
Position (kb) 372
373 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 371.180 kb on + strand at 371.181 kb on - strand at 371.181 kb on - strand at 371.181 kb on - strand at 371.398 kb on - strand, within EX31_RS01685 at 371.398 kb on - strand, within EX31_RS01685 at 371.398 kb on - strand, within EX31_RS01685 at 371.398 kb on - strand, within EX31_RS01685 at 371.439 kb on + strand, within EX31_RS01685 at 371.486 kb on + strand, within EX31_RS01685 at 371.487 kb on - strand, within EX31_RS01685 at 371.487 kb on - strand, within EX31_RS01685 at 371.487 kb on - strand, within EX31_RS01685 at 371.568 kb on + strand, within EX31_RS01685 at 371.568 kb on + strand, within EX31_RS01685 at 371.844 kb on + strand, within EX31_RS01685 at 371.844 kb on + strand, within EX31_RS01685 at 371.844 kb on + strand, within EX31_RS01685 at 371.845 kb on - strand, within EX31_RS01685 at 371.845 kb on - strand, within EX31_RS01685 at 371.856 kb on + strand, within EX31_RS01685 at 371.857 kb on - strand, within EX31_RS01685 at 372.016 kb on + strand, within EX31_RS01685 at 372.017 kb on - strand, within EX31_RS01685 at 372.017 kb on - strand, within EX31_RS01685 at 372.017 kb on - strand, within EX31_RS01685 at 372.018 kb on + strand, within EX31_RS01685 at 372.019 kb on - strand, within EX31_RS01685 at 372.019 kb on - strand, within EX31_RS01685 at 372.019 kb on - strand, within EX31_RS01685 at 372.019 kb on - strand, within EX31_RS01685 at 372.019 kb on - strand, within EX31_RS01685 at 372.099 kb on - strand at 372.252 kb on + strand, within EX31_RS01690 at 372.253 kb on - strand, within EX31_RS01690 at 372.253 kb on - strand, within EX31_RS01690 at 372.253 kb on - strand, within EX31_RS01690 at 372.253 kb on - strand, within EX31_RS01690 at 372.253 kb on - strand, within EX31_RS01690 at 372.379 kb on + strand, within EX31_RS01690 at 372.566 kb on + strand, within EX31_RS01690 at 372.663 kb on - strand, within EX31_RS01690 at 372.663 kb on - strand, within EX31_RS01690 at 372.668 kb on + strand, within EX31_RS01690 at 372.681 kb on - strand, within EX31_RS01690 at 372.735 kb on + strand, within EX31_RS01690 at 372.760 kb on - strand, within EX31_RS01690 at 372.767 kb on + strand, within EX31_RS01690 at 372.952 kb on - strand at 372.957 kb on + strand at 372.985 kb on + strand at 373.048 kb on + strand at 373.054 kb on + strand at 373.087 kb on + strand at 373.115 kb on + strand at 373.173 kb on + strand, within EX31_RS01695 at 373.333 kb on + strand, within EX31_RS01695 at 373.509 kb on + strand, within EX31_RS01700 at 373.630 kb on + strand, within EX31_RS01700 at 373.645 kb on + strand, within EX31_RS01700 at 373.645 kb on + strand, within EX31_RS01700 at 373.698 kb on + strand, within EX31_RS01700 at 373.761 kb on + strand at 373.778 kb on + strand at 373.778 kb on + strand at 373.862 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 371,180 + +0.6 371,181 - +0.8 371,181 - -0.1 371,181 - -0.5 371,398 - EX31_RS01685 0.26 +1.1 371,398 - EX31_RS01685 0.26 -1.0 371,398 - EX31_RS01685 0.26 +0.0 371,398 - EX31_RS01685 0.26 +1.0 371,439 + EX31_RS01685 0.30 -0.1 371,486 + EX31_RS01685 0.35 +0.6 371,487 - EX31_RS01685 0.35 -0.3 371,487 - EX31_RS01685 0.35 -0.4 371,487 - EX31_RS01685 0.35 +0.7 371,568 + EX31_RS01685 0.43 -0.7 371,568 + EX31_RS01685 0.43 +1.0 371,844 + EX31_RS01685 0.70 -1.1 371,844 + EX31_RS01685 0.70 -0.6 371,844 + EX31_RS01685 0.70 +0.7 371,845 - EX31_RS01685 0.70 -1.4 371,845 - EX31_RS01685 0.70 +1.0 371,856 + EX31_RS01685 0.71 -0.6 371,857 - EX31_RS01685 0.71 +0.6 372,016 + EX31_RS01685 0.87 +0.2 372,017 - EX31_RS01685 0.87 +1.5 372,017 - EX31_RS01685 0.87 +1.2 372,017 - EX31_RS01685 0.87 -0.7 372,018 + EX31_RS01685 0.87 -0.9 372,019 - EX31_RS01685 0.87 +2.2 372,019 - EX31_RS01685 0.87 +0.6 372,019 - EX31_RS01685 0.87 -0.6 372,019 - EX31_RS01685 0.87 -0.4 372,019 - EX31_RS01685 0.87 -3.6 372,099 - -1.3 372,252 + EX31_RS01690 0.12 -0.9 372,253 - EX31_RS01690 0.12 +1.0 372,253 - EX31_RS01690 0.12 +0.3 372,253 - EX31_RS01690 0.12 -1.1 372,253 - EX31_RS01690 0.12 +0.0 372,253 - EX31_RS01690 0.12 -2.3 372,379 + EX31_RS01690 0.27 -1.6 372,566 + EX31_RS01690 0.50 +0.6 372,663 - EX31_RS01690 0.62 -0.4 372,663 - EX31_RS01690 0.62 -0.9 372,668 + EX31_RS01690 0.63 +0.4 372,681 - EX31_RS01690 0.65 -0.9 372,735 + EX31_RS01690 0.71 -2.1 372,760 - EX31_RS01690 0.74 -0.3 372,767 + EX31_RS01690 0.75 -0.5 372,952 - -0.1 372,957 + -2.0 372,985 + +1.2 373,048 + -0.5 373,054 + -2.1 373,087 + +1.8 373,115 + -0.1 373,173 + EX31_RS01695 0.24 -1.8 373,333 + EX31_RS01695 0.67 -0.7 373,509 + EX31_RS01700 0.19 +1.5 373,630 + EX31_RS01700 0.53 -1.7 373,645 + EX31_RS01700 0.57 +0.3 373,645 + EX31_RS01700 0.57 -0.1 373,698 + EX31_RS01700 0.72 +0.8 373,761 + +0.6 373,778 + -0.3 373,778 + +0.5 373,862 + -1.2
Or see this region's nucleotide sequence