Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00205 and EX31_RS00210 are separated by 22 nucleotides EX31_RS00210 and EX31_RS00215 are separated by 181 nucleotides EX31_RS00215 and EX31_RS00220 are separated by 156 nucleotides EX31_RS00220 and EX31_RS00225 are separated by 52 nucleotides
EX31_RS00205: EX31_RS00205 - DUF1493 family protein, at 42,767 to 43,111
_RS00205
EX31_RS00210: EX31_RS00210 - Hcp family type VI secretion system effector, at 43,134 to 43,616
_RS00210
EX31_RS00215: EX31_RS00215 - ketopantoate reductase family protein, at 43,798 to 44,721
_RS00215
EX31_RS00220: EX31_RS00220 - Fic family protein, at 44,878 to 45,651
_RS00220
EX31_RS00225: EX31_RS00225 - ABC transporter permease, at 45,704 to 46,666
_RS00225
Position (kb) 43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 42.820 kb on - strand, within EX31_RS00205 at 42.879 kb on + strand, within EX31_RS00205 at 42.879 kb on + strand, within EX31_RS00205 at 42.909 kb on + strand, within EX31_RS00205 at 42.909 kb on + strand, within EX31_RS00205 at 42.910 kb on - strand, within EX31_RS00205 at 42.911 kb on + strand, within EX31_RS00205 at 42.911 kb on + strand, within EX31_RS00205 at 42.912 kb on - strand, within EX31_RS00205 at 42.974 kb on + strand, within EX31_RS00205 at 42.974 kb on + strand, within EX31_RS00205 at 42.975 kb on - strand, within EX31_RS00205 at 42.975 kb on - strand, within EX31_RS00205 at 43.015 kb on + strand, within EX31_RS00205 at 43.015 kb on + strand, within EX31_RS00205 at 43.028 kb on - strand, within EX31_RS00205 at 43.028 kb on - strand, within EX31_RS00205 at 43.035 kb on + strand, within EX31_RS00205 at 43.035 kb on + strand, within EX31_RS00205 at 43.036 kb on - strand, within EX31_RS00205 at 43.036 kb on - strand, within EX31_RS00205 at 43.056 kb on + strand, within EX31_RS00205 at 43.062 kb on + strand, within EX31_RS00205 at 43.062 kb on + strand, within EX31_RS00205 at 43.104 kb on - strand at 43.132 kb on - strand at 43.173 kb on - strand at 43.173 kb on - strand at 43.188 kb on - strand, within EX31_RS00210 at 43.188 kb on - strand, within EX31_RS00210 at 43.399 kb on + strand, within EX31_RS00210 at 43.399 kb on + strand, within EX31_RS00210 at 43.399 kb on + strand, within EX31_RS00210 at 43.399 kb on + strand, within EX31_RS00210 at 43.399 kb on + strand, within EX31_RS00210 at 43.400 kb on - strand, within EX31_RS00210 at 43.400 kb on - strand, within EX31_RS00210 at 43.400 kb on - strand, within EX31_RS00210 at 43.400 kb on - strand, within EX31_RS00210 at 43.400 kb on - strand, within EX31_RS00210 at 43.400 kb on - strand, within EX31_RS00210 at 43.400 kb on - strand, within EX31_RS00210 at 43.500 kb on + strand, within EX31_RS00210 at 43.501 kb on - strand, within EX31_RS00210 at 43.529 kb on + strand, within EX31_RS00210 at 43.530 kb on - strand, within EX31_RS00210 at 43.534 kb on + strand, within EX31_RS00210 at 43.535 kb on - strand, within EX31_RS00210 at 43.535 kb on - strand, within EX31_RS00210 at 43.548 kb on - strand, within EX31_RS00210 at 43.597 kb on - strand at 43.600 kb on + strand at 43.600 kb on + strand at 43.634 kb on + strand at 43.647 kb on + strand at 43.715 kb on - strand at 43.839 kb on + strand at 43.950 kb on - strand, within EX31_RS00215 at 44.282 kb on + strand, within EX31_RS00215 at 44.286 kb on + strand, within EX31_RS00215 at 44.316 kb on + strand, within EX31_RS00215 at 44.316 kb on + strand, within EX31_RS00215 at 44.317 kb on - strand, within EX31_RS00215 at 44.317 kb on - strand, within EX31_RS00215 at 44.317 kb on - strand, within EX31_RS00215 at 44.317 kb on - strand, within EX31_RS00215 at 44.403 kb on + strand, within EX31_RS00215 at 44.404 kb on - strand, within EX31_RS00215 at 44.404 kb on - strand, within EX31_RS00215 at 44.449 kb on + strand, within EX31_RS00215 at 44.450 kb on - strand, within EX31_RS00215 at 44.450 kb on - strand, within EX31_RS00215 at 44.498 kb on - strand, within EX31_RS00215 at 44.519 kb on + strand, within EX31_RS00215 at 44.520 kb on - strand, within EX31_RS00215 at 44.520 kb on - strand, within EX31_RS00215 at 44.546 kb on - strand, within EX31_RS00215 at 44.633 kb on - strand at 44.737 kb on - strand at 44.737 kb on - strand at 44.767 kb on + strand at 44.841 kb on + strand at 44.841 kb on + strand at 44.842 kb on - strand at 44.842 kb on - strand at 44.842 kb on - strand at 44.844 kb on + strand at 44.844 kb on + strand at 44.845 kb on - strand at 44.899 kb on + strand at 44.900 kb on - strand at 44.905 kb on - strand at 44.905 kb on - strand at 45.009 kb on + strand, within EX31_RS00220 at 45.145 kb on + strand, within EX31_RS00220 at 45.145 kb on + strand, within EX31_RS00220 at 45.146 kb on - strand, within EX31_RS00220 at 45.155 kb on + strand, within EX31_RS00220 at 45.265 kb on + strand, within EX31_RS00220 at 45.266 kb on - strand, within EX31_RS00220 at 45.391 kb on + strand, within EX31_RS00220 at 45.405 kb on + strand, within EX31_RS00220 at 45.532 kb on + strand, within EX31_RS00220 at 45.583 kb on - strand at 45.591 kb on + strand at 45.592 kb on - strand at 45.617 kb on + strand at 45.697 kb on + strand at 45.698 kb on - strand at 45.698 kb on - strand at 45.698 kb on - strand at 45.705 kb on + strand at 45.705 kb on + strand at 45.706 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 42,820 - EX31_RS00205 0.15 -2.7 42,879 + EX31_RS00205 0.32 -1.1 42,879 + EX31_RS00205 0.32 +0.4 42,909 + EX31_RS00205 0.41 -3.1 42,909 + EX31_RS00205 0.41 -1.8 42,910 - EX31_RS00205 0.41 -0.9 42,911 + EX31_RS00205 0.42 +0.3 42,911 + EX31_RS00205 0.42 +0.5 42,912 - EX31_RS00205 0.42 -1.2 42,974 + EX31_RS00205 0.60 +0.8 42,974 + EX31_RS00205 0.60 -2.8 42,975 - EX31_RS00205 0.60 +0.6 42,975 - EX31_RS00205 0.60 +0.2 43,015 + EX31_RS00205 0.72 -0.6 43,015 + EX31_RS00205 0.72 +0.7 43,028 - EX31_RS00205 0.76 -0.8 43,028 - EX31_RS00205 0.76 -0.2 43,035 + EX31_RS00205 0.78 -1.4 43,035 + EX31_RS00205 0.78 +0.1 43,036 - EX31_RS00205 0.78 -0.4 43,036 - EX31_RS00205 0.78 -0.0 43,056 + EX31_RS00205 0.84 -0.1 43,062 + EX31_RS00205 0.86 +0.2 43,062 + EX31_RS00205 0.86 +1.5 43,104 - -1.9 43,132 - +0.4 43,173 - -0.6 43,173 - -0.9 43,188 - EX31_RS00210 0.11 -0.0 43,188 - EX31_RS00210 0.11 -1.2 43,399 + EX31_RS00210 0.55 -0.9 43,399 + EX31_RS00210 0.55 +0.1 43,399 + EX31_RS00210 0.55 +1.3 43,399 + EX31_RS00210 0.55 +1.0 43,399 + EX31_RS00210 0.55 +1.1 43,400 - EX31_RS00210 0.55 -0.1 43,400 - EX31_RS00210 0.55 -1.5 43,400 - EX31_RS00210 0.55 -0.1 43,400 - EX31_RS00210 0.55 +1.4 43,400 - EX31_RS00210 0.55 -1.4 43,400 - EX31_RS00210 0.55 -0.1 43,400 - EX31_RS00210 0.55 -0.9 43,500 + EX31_RS00210 0.76 +0.2 43,501 - EX31_RS00210 0.76 -1.7 43,529 + EX31_RS00210 0.82 -0.2 43,530 - EX31_RS00210 0.82 +2.1 43,534 + EX31_RS00210 0.83 +1.1 43,535 - EX31_RS00210 0.83 -0.1 43,535 - EX31_RS00210 0.83 -1.9 43,548 - EX31_RS00210 0.86 -1.1 43,597 - +0.7 43,600 + -2.1 43,600 + -0.5 43,634 + -1.8 43,647 + +0.5 43,715 - +0.9 43,839 + -1.5 43,950 - EX31_RS00215 0.16 +0.1 44,282 + EX31_RS00215 0.52 +1.4 44,286 + EX31_RS00215 0.53 +0.3 44,316 + EX31_RS00215 0.56 -0.3 44,316 + EX31_RS00215 0.56 -0.7 44,317 - EX31_RS00215 0.56 +0.1 44,317 - EX31_RS00215 0.56 +0.1 44,317 - EX31_RS00215 0.56 -3.2 44,317 - EX31_RS00215 0.56 +0.7 44,403 + EX31_RS00215 0.65 +0.5 44,404 - EX31_RS00215 0.66 -1.2 44,404 - EX31_RS00215 0.66 +0.9 44,449 + EX31_RS00215 0.70 +0.1 44,450 - EX31_RS00215 0.71 -1.0 44,450 - EX31_RS00215 0.71 +0.0 44,498 - EX31_RS00215 0.76 -0.6 44,519 + EX31_RS00215 0.78 +0.1 44,520 - EX31_RS00215 0.78 -0.3 44,520 - EX31_RS00215 0.78 -0.3 44,546 - EX31_RS00215 0.81 -0.6 44,633 - +1.5 44,737 - +0.0 44,737 - +1.2 44,767 + -0.3 44,841 + -0.1 44,841 + +0.3 44,842 - +1.2 44,842 - -0.5 44,842 - +0.3 44,844 + +0.6 44,844 + +0.4 44,845 - +0.1 44,899 + -0.2 44,900 - +1.8 44,905 - -2.7 44,905 - -0.5 45,009 + EX31_RS00220 0.17 +0.5 45,145 + EX31_RS00220 0.34 +0.6 45,145 + EX31_RS00220 0.34 +1.1 45,146 - EX31_RS00220 0.35 -0.4 45,155 + EX31_RS00220 0.36 -0.8 45,265 + EX31_RS00220 0.50 -1.7 45,266 - EX31_RS00220 0.50 +2.2 45,391 + EX31_RS00220 0.66 +0.4 45,405 + EX31_RS00220 0.68 -2.5 45,532 + EX31_RS00220 0.84 +0.8 45,583 - -0.3 45,591 + -0.2 45,592 - +0.3 45,617 + +0.9 45,697 + +1.1 45,698 - -0.5 45,698 - +0.0 45,698 - -0.2 45,705 + -1.3 45,705 + -0.9 45,706 - +0.5
Or see this region's nucleotide sequence