Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24755 and EX31_RS24760 are separated by 19 nucleotides EX31_RS24760 and EX31_RS24765 are separated by 406 nucleotides
EX31_RS24755: EX31_RS24755 - prolyl aminopeptidase, at 722,696 to 723,652
_RS24755
EX31_RS24760: EX31_RS24760 - DNA polymerase III subunit theta, at 723,672 to 723,902
_RS24760
EX31_RS24765: EX31_RS24765 - non-heme ferritin, at 724,309 to 724,815
_RS24765
Position (kb) 723
724 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 722.681 kb on - strand at 722.715 kb on + strand at 722.716 kb on - strand at 722.716 kb on - strand at 722.717 kb on + strand at 722.717 kb on + strand at 722.735 kb on + strand at 722.736 kb on - strand at 722.817 kb on + strand, within EX31_RS24755 at 722.817 kb on + strand, within EX31_RS24755 at 722.818 kb on - strand, within EX31_RS24755 at 722.818 kb on - strand, within EX31_RS24755 at 722.885 kb on + strand, within EX31_RS24755 at 722.886 kb on - strand, within EX31_RS24755 at 722.953 kb on + strand, within EX31_RS24755 at 722.953 kb on + strand, within EX31_RS24755 at 722.953 kb on + strand, within EX31_RS24755 at 722.953 kb on + strand, within EX31_RS24755 at 723.143 kb on + strand, within EX31_RS24755 at 723.187 kb on + strand, within EX31_RS24755 at 723.187 kb on + strand, within EX31_RS24755 at 723.188 kb on - strand, within EX31_RS24755 at 723.188 kb on - strand, within EX31_RS24755 at 723.188 kb on - strand, within EX31_RS24755 at 723.188 kb on - strand, within EX31_RS24755 at 723.188 kb on - strand, within EX31_RS24755 at 723.188 kb on - strand, within EX31_RS24755 at 723.217 kb on + strand, within EX31_RS24755 at 723.457 kb on + strand, within EX31_RS24755 at 723.500 kb on - strand, within EX31_RS24755 at 723.691 kb on + strand at 723.691 kb on + strand at 723.691 kb on + strand at 723.692 kb on - strand at 723.710 kb on + strand, within EX31_RS24760 at 723.710 kb on + strand, within EX31_RS24760 at 723.710 kb on + strand, within EX31_RS24760 at 723.710 kb on + strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.751 kb on + strand, within EX31_RS24760 at 723.751 kb on + strand, within EX31_RS24760 at 723.752 kb on - strand, within EX31_RS24760 at 723.811 kb on + strand, within EX31_RS24760 at 723.812 kb on - strand, within EX31_RS24760 at 723.812 kb on - strand, within EX31_RS24760 at 723.812 kb on - strand, within EX31_RS24760 at 723.812 kb on - strand, within EX31_RS24760 at 723.812 kb on - strand, within EX31_RS24760 at 723.858 kb on - strand, within EX31_RS24760 at 723.858 kb on - strand, within EX31_RS24760 at 723.902 kb on + strand at 723.937 kb on - strand at 723.937 kb on - strand at 723.978 kb on + strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 724.012 kb on + strand at 724.013 kb on - strand at 724.053 kb on - strand at 724.076 kb on + strand at 724.119 kb on + strand at 724.229 kb on - strand at 724.229 kb on - strand at 724.285 kb on + strand at 724.338 kb on + strand at 724.376 kb on + strand, within EX31_RS24765 at 724.486 kb on + strand, within EX31_RS24765 at 724.579 kb on + strand, within EX31_RS24765 at 724.580 kb on - strand, within EX31_RS24765 at 724.675 kb on + strand, within EX31_RS24765 at 724.675 kb on + strand, within EX31_RS24765 at 724.814 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 722,681 - +0.4 722,715 + -0.3 722,716 - +0.1 722,716 - -1.5 722,717 + -2.3 722,717 + -0.5 722,735 + -0.8 722,736 - -0.5 722,817 + EX31_RS24755 0.13 -1.2 722,817 + EX31_RS24755 0.13 +1.9 722,818 - EX31_RS24755 0.13 -1.3 722,818 - EX31_RS24755 0.13 -1.2 722,885 + EX31_RS24755 0.20 +0.2 722,886 - EX31_RS24755 0.20 -2.3 722,953 + EX31_RS24755 0.27 -0.3 722,953 + EX31_RS24755 0.27 -0.8 722,953 + EX31_RS24755 0.27 +0.3 722,953 + EX31_RS24755 0.27 -1.0 723,143 + EX31_RS24755 0.47 -0.3 723,187 + EX31_RS24755 0.51 -1.9 723,187 + EX31_RS24755 0.51 -0.7 723,188 - EX31_RS24755 0.51 +0.4 723,188 - EX31_RS24755 0.51 -1.2 723,188 - EX31_RS24755 0.51 +0.7 723,188 - EX31_RS24755 0.51 +0.9 723,188 - EX31_RS24755 0.51 -1.1 723,188 - EX31_RS24755 0.51 -0.2 723,217 + EX31_RS24755 0.54 -1.8 723,457 + EX31_RS24755 0.80 +0.5 723,500 - EX31_RS24755 0.84 +1.5 723,691 + -2.0 723,691 + -0.1 723,691 + +0.0 723,692 - +0.1 723,710 + EX31_RS24760 0.16 -0.3 723,710 + EX31_RS24760 0.16 -0.4 723,710 + EX31_RS24760 0.16 -0.9 723,710 + EX31_RS24760 0.16 -2.8 723,711 - EX31_RS24760 0.17 +0.7 723,711 - EX31_RS24760 0.17 -1.8 723,711 - EX31_RS24760 0.17 -0.3 723,711 - EX31_RS24760 0.17 -0.5 723,711 - EX31_RS24760 0.17 -0.0 723,711 - EX31_RS24760 0.17 -1.6 723,711 - EX31_RS24760 0.17 +1.0 723,711 - EX31_RS24760 0.17 -0.5 723,711 - EX31_RS24760 0.17 -0.7 723,711 - EX31_RS24760 0.17 -0.2 723,711 - EX31_RS24760 0.17 -0.6 723,751 + EX31_RS24760 0.34 -1.7 723,751 + EX31_RS24760 0.34 -0.0 723,752 - EX31_RS24760 0.35 -1.4 723,811 + EX31_RS24760 0.60 -1.2 723,812 - EX31_RS24760 0.61 -0.5 723,812 - EX31_RS24760 0.61 -1.1 723,812 - EX31_RS24760 0.61 -0.7 723,812 - EX31_RS24760 0.61 +0.3 723,812 - EX31_RS24760 0.61 -0.6 723,858 - EX31_RS24760 0.81 +0.9 723,858 - EX31_RS24760 0.81 +0.3 723,902 + -1.1 723,937 - +0.1 723,937 - -1.3 723,978 + +0.4 723,979 - +0.9 723,979 - -1.3 723,979 - -2.3 723,979 - +0.5 724,012 + +0.4 724,013 - -0.9 724,053 - +0.3 724,076 + -1.0 724,119 + +0.4 724,229 - +0.1 724,229 - +0.5 724,285 + +0.3 724,338 + -0.3 724,376 + EX31_RS24765 0.13 +0.1 724,486 + EX31_RS24765 0.35 -1.2 724,579 + EX31_RS24765 0.53 +0.2 724,580 - EX31_RS24765 0.53 +0.1 724,675 + EX31_RS24765 0.72 +1.4 724,675 + EX31_RS24765 0.72 -0.7 724,814 - -0.7
Or see this region's nucleotide sequence