Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22050 and EX31_RS22055 overlap by 8 nucleotides EX31_RS22055 and EX31_RS22060 are separated by 270 nucleotides EX31_RS22060 and EX31_RS22065 are separated by 444 nucleotides
EX31_RS22050: EX31_RS22050 - helix-turn-helix domain-containing protein, at 157,526 to 157,858
_RS22050
EX31_RS22055: EX31_RS22055 - type II toxin-antitoxin system RelE/ParE family toxin, at 157,851 to 158,246
_RS22055
EX31_RS22060: EX31_RS22060 - cobalamin-independent methionine synthase II family protein, at 158,517 to 159,620
_RS22060
EX31_RS22065: EX31_RS22065 - branched-chain amino acid transport system II carrier protein, at 160,065 to 161,384
_RS22065
Position (kb) 158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 157.569 kb on - strand, within EX31_RS22050 at 157.569 kb on - strand, within EX31_RS22050 at 157.637 kb on - strand, within EX31_RS22050 at 157.637 kb on - strand, within EX31_RS22050 at 157.637 kb on - strand, within EX31_RS22050 at 157.637 kb on - strand, within EX31_RS22050 at 157.637 kb on - strand, within EX31_RS22050 at 157.637 kb on - strand, within EX31_RS22050 at 157.859 kb on + strand at 157.875 kb on - strand at 157.875 kb on - strand at 157.875 kb on - strand at 157.875 kb on - strand at 157.879 kb on - strand at 157.947 kb on - strand, within EX31_RS22055 at 157.947 kb on - strand, within EX31_RS22055 at 157.947 kb on - strand, within EX31_RS22055 at 157.947 kb on - strand, within EX31_RS22055 at 157.948 kb on + strand, within EX31_RS22055 at 157.948 kb on + strand, within EX31_RS22055 at 157.948 kb on + strand, within EX31_RS22055 at 157.949 kb on - strand, within EX31_RS22055 at 157.949 kb on - strand, within EX31_RS22055 at 157.950 kb on + strand, within EX31_RS22055 at 157.950 kb on + strand, within EX31_RS22055 at 157.950 kb on + strand, within EX31_RS22055 at 157.950 kb on + strand, within EX31_RS22055 at 157.950 kb on + strand, within EX31_RS22055 at 157.950 kb on + strand, within EX31_RS22055 at 157.951 kb on - strand, within EX31_RS22055 at 157.951 kb on - strand, within EX31_RS22055 at 157.951 kb on - strand, within EX31_RS22055 at 157.998 kb on - strand, within EX31_RS22055 at 158.020 kb on + strand, within EX31_RS22055 at 158.021 kb on - strand, within EX31_RS22055 at 158.030 kb on + strand, within EX31_RS22055 at 158.108 kb on - strand, within EX31_RS22055 at 158.222 kb on + strand at 158.231 kb on + strand at 158.231 kb on + strand at 158.232 kb on - strand at 158.235 kb on + strand at 158.235 kb on + strand at 158.236 kb on - strand at 158.272 kb on - strand at 158.307 kb on + strand at 158.403 kb on + strand at 158.404 kb on - strand at 158.404 kb on - strand at 158.404 kb on - strand at 158.404 kb on - strand at 158.453 kb on + strand at 158.453 kb on + strand at 158.453 kb on + strand at 158.454 kb on - strand at 158.454 kb on - strand at 158.454 kb on - strand at 158.458 kb on - strand at 158.461 kb on + strand at 158.462 kb on - strand at 158.501 kb on + strand at 158.501 kb on + strand at 158.501 kb on + strand at 158.501 kb on + strand at 158.502 kb on - strand at 158.504 kb on + strand at 158.505 kb on - strand at 158.505 kb on - strand at 158.505 kb on - strand at 158.505 kb on - strand at 158.505 kb on - strand at 158.525 kb on + strand at 158.525 kb on + strand at 158.525 kb on + strand at 158.525 kb on + strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.773 kb on - strand, within EX31_RS22060 at 158.773 kb on - strand, within EX31_RS22060 at 158.806 kb on + strand, within EX31_RS22060 at 158.806 kb on + strand, within EX31_RS22060 at 158.813 kb on + strand, within EX31_RS22060 at 158.814 kb on - strand, within EX31_RS22060 at 158.814 kb on - strand, within EX31_RS22060 at 158.814 kb on - strand, within EX31_RS22060 at 158.828 kb on + strand, within EX31_RS22060 at 158.829 kb on - strand, within EX31_RS22060 at 159.003 kb on + strand, within EX31_RS22060 at 159.003 kb on + strand, within EX31_RS22060 at 159.004 kb on - strand, within EX31_RS22060 at 159.051 kb on + strand, within EX31_RS22060 at 159.099 kb on + strand, within EX31_RS22060 at 159.160 kb on + strand, within EX31_RS22060 at 159.167 kb on + strand, within EX31_RS22060 at 159.167 kb on + strand, within EX31_RS22060 at 159.171 kb on + strand, within EX31_RS22060 at 159.172 kb on - strand, within EX31_RS22060 at 159.172 kb on - strand, within EX31_RS22060 at 159.381 kb on - strand, within EX31_RS22060 at 159.384 kb on - strand, within EX31_RS22060 at 159.486 kb on + strand, within EX31_RS22060 at 159.487 kb on - strand, within EX31_RS22060 at 159.650 kb on + strand at 159.650 kb on + strand at 159.651 kb on - strand at 159.651 kb on - strand at 159.651 kb on - strand at 159.654 kb on + strand at 159.654 kb on + strand at 159.654 kb on + strand at 159.654 kb on + strand at 159.655 kb on - strand at 159.723 kb on + strand at 159.723 kb on + strand at 159.724 kb on - strand at 159.724 kb on - strand at 159.724 kb on - strand at 159.738 kb on + strand at 159.738 kb on + strand at 159.739 kb on - strand at 159.753 kb on - strand at 159.753 kb on - strand at 159.756 kb on + strand at 159.756 kb on + strand at 159.756 kb on + strand at 159.757 kb on - strand at 159.780 kb on + strand at 159.791 kb on + strand at 159.791 kb on + strand at 159.791 kb on + strand at 159.791 kb on + strand at 159.792 kb on - strand at 159.792 kb on - strand at 159.804 kb on + strand at 159.805 kb on - strand at 159.805 kb on - strand at 159.810 kb on + strand at 159.855 kb on + strand at 159.856 kb on - strand at 159.856 kb on - strand at 159.856 kb on - strand at 159.862 kb on + strand at 159.863 kb on - strand at 159.914 kb on + strand at 159.914 kb on + strand at 159.914 kb on + strand at 159.915 kb on - strand at 159.915 kb on - strand at 159.927 kb on - strand at 159.927 kb on - strand at 159.980 kb on + strand at 159.980 kb on + strand at 159.980 kb on + strand at 159.980 kb on + strand at 159.980 kb on + strand at 159.980 kb on + strand at 159.980 kb on + strand at 159.980 kb on + strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.983 kb on - strand at 159.983 kb on - strand at 159.983 kb on - strand at 159.983 kb on - strand at 159.983 kb on - strand at 159.983 kb on - strand at 159.983 kb on - strand at 159.983 kb on - strand at 160.033 kb on + strand at 160.033 kb on + strand at 160.033 kb on + strand at 160.033 kb on + strand at 160.033 kb on + strand at 160.070 kb on + strand at 160.070 kb on + strand at 160.070 kb on + strand at 160.071 kb on - strand at 160.071 kb on - strand at 160.085 kb on + strand at 160.086 kb on - strand at 160.086 kb on - strand at 160.091 kb on + strand at 160.208 kb on + strand, within EX31_RS22065 at 160.209 kb on - strand, within EX31_RS22065 at 160.243 kb on + strand, within EX31_RS22065 at 160.243 kb on + strand, within EX31_RS22065 at 160.286 kb on + strand, within EX31_RS22065 at 160.310 kb on + strand, within EX31_RS22065 at 160.437 kb on + strand, within EX31_RS22065 at 160.438 kb on - strand, within EX31_RS22065 at 160.449 kb on + strand, within EX31_RS22065 at 160.450 kb on - strand, within EX31_RS22065 at 160.499 kb on + strand, within EX31_RS22065 at 160.565 kb on - strand, within EX31_RS22065 at 160.606 kb on - strand, within EX31_RS22065
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 157,569 - EX31_RS22050 0.13 +1.4 157,569 - EX31_RS22050 0.13 -0.2 157,637 - EX31_RS22050 0.33 -0.4 157,637 - EX31_RS22050 0.33 -0.3 157,637 - EX31_RS22050 0.33 -0.4 157,637 - EX31_RS22050 0.33 -0.2 157,637 - EX31_RS22050 0.33 -0.4 157,637 - EX31_RS22050 0.33 -1.5 157,859 + +1.0 157,875 - +0.3 157,875 - +0.3 157,875 - +0.5 157,875 - -0.6 157,879 - -0.0 157,947 - EX31_RS22055 0.24 +1.4 157,947 - EX31_RS22055 0.24 +0.5 157,947 - EX31_RS22055 0.24 -0.0 157,947 - EX31_RS22055 0.24 +0.4 157,948 + EX31_RS22055 0.24 -0.9 157,948 + EX31_RS22055 0.24 +0.9 157,948 + EX31_RS22055 0.24 +1.8 157,949 - EX31_RS22055 0.25 +0.4 157,949 - EX31_RS22055 0.25 -0.7 157,950 + EX31_RS22055 0.25 -0.2 157,950 + EX31_RS22055 0.25 +1.3 157,950 + EX31_RS22055 0.25 +1.4 157,950 + EX31_RS22055 0.25 +1.3 157,950 + EX31_RS22055 0.25 +0.2 157,950 + EX31_RS22055 0.25 +0.4 157,951 - EX31_RS22055 0.25 -1.2 157,951 - EX31_RS22055 0.25 +0.3 157,951 - EX31_RS22055 0.25 -0.4 157,998 - EX31_RS22055 0.37 +1.3 158,020 + EX31_RS22055 0.43 -0.7 158,021 - EX31_RS22055 0.43 +0.3 158,030 + EX31_RS22055 0.45 -0.7 158,108 - EX31_RS22055 0.65 -0.2 158,222 + +1.2 158,231 + +0.8 158,231 + +0.6 158,232 - -0.3 158,235 + +1.0 158,235 + +0.2 158,236 - -0.2 158,272 - +1.2 158,307 + -0.4 158,403 + +0.5 158,404 - -0.1 158,404 - +0.6 158,404 - -0.1 158,404 - -0.1 158,453 + +2.1 158,453 + +0.1 158,453 + -0.4 158,454 - -0.2 158,454 - +0.6 158,454 - -0.6 158,458 - +0.4 158,461 + -0.6 158,462 - -1.4 158,501 + -0.5 158,501 + +0.2 158,501 + -0.4 158,501 + -1.4 158,502 - +0.4 158,504 + +0.8 158,505 - -0.2 158,505 - -0.9 158,505 - -0.5 158,505 - +0.4 158,505 - +1.4 158,525 + -1.0 158,525 + -0.3 158,525 + -1.2 158,525 + +0.2 158,526 - -1.5 158,526 - -2.4 158,526 - -0.1 158,526 - -0.2 158,526 - +0.4 158,526 - -0.1 158,526 - -0.3 158,526 - -0.4 158,526 - +0.5 158,526 - -2.0 158,526 - +0.3 158,773 - EX31_RS22060 0.23 +0.8 158,773 - EX31_RS22060 0.23 -0.4 158,806 + EX31_RS22060 0.26 -0.2 158,806 + EX31_RS22060 0.26 +0.7 158,813 + EX31_RS22060 0.27 -0.3 158,814 - EX31_RS22060 0.27 -0.9 158,814 - EX31_RS22060 0.27 -0.2 158,814 - EX31_RS22060 0.27 -0.7 158,828 + EX31_RS22060 0.28 -0.5 158,829 - EX31_RS22060 0.28 +0.3 159,003 + EX31_RS22060 0.44 -0.5 159,003 + EX31_RS22060 0.44 +0.4 159,004 - EX31_RS22060 0.44 +0.4 159,051 + EX31_RS22060 0.48 +0.9 159,099 + EX31_RS22060 0.53 -0.2 159,160 + EX31_RS22060 0.58 +0.3 159,167 + EX31_RS22060 0.59 +0.4 159,167 + EX31_RS22060 0.59 +0.1 159,171 + EX31_RS22060 0.59 -0.1 159,172 - EX31_RS22060 0.59 +0.3 159,172 - EX31_RS22060 0.59 +1.2 159,381 - EX31_RS22060 0.78 -1.6 159,384 - EX31_RS22060 0.79 -0.0 159,486 + EX31_RS22060 0.88 +1.2 159,487 - EX31_RS22060 0.88 +0.7 159,650 + -0.4 159,650 + -0.6 159,651 - +3.1 159,651 - +0.1 159,651 - -0.8 159,654 + -1.9 159,654 + +0.2 159,654 + +0.1 159,654 + -0.6 159,655 - -3.4 159,723 + -0.5 159,723 + +1.1 159,724 - +0.6 159,724 - -0.8 159,724 - -0.4 159,738 + -0.5 159,738 + -1.4 159,739 - -0.3 159,753 - -0.3 159,753 - -1.1 159,756 + +0.7 159,756 + -1.7 159,756 + -0.1 159,757 - +0.4 159,780 + +0.0 159,791 + +1.1 159,791 + +0.3 159,791 + -1.4 159,791 + -1.0 159,792 - +0.4 159,792 - -0.1 159,804 + -0.4 159,805 - -0.3 159,805 - -0.4 159,810 + -0.4 159,855 + +0.4 159,856 - -3.2 159,856 - +1.2 159,856 - -0.8 159,862 + +0.3 159,863 - +0.2 159,914 + +0.0 159,914 + -1.5 159,914 + -2.9 159,915 - -0.5 159,915 - +1.2 159,927 - -1.3 159,927 - +1.5 159,980 + -0.4 159,980 + +0.4 159,980 + -2.2 159,980 + +0.7 159,980 + -2.0 159,980 + -0.1 159,980 + -0.3 159,980 + +1.2 159,981 - +0.0 159,981 - +0.1 159,981 - -1.4 159,981 - +0.3 159,981 - +0.2 159,981 - +0.7 159,981 - +0.5 159,981 - +0.6 159,981 - -1.5 159,981 - +1.0 159,982 + -1.3 159,982 + +0.4 159,982 + +0.6 159,982 + +0.5 159,982 + +1.2 159,982 + +0.7 159,982 + +3.0 159,982 + +1.1 159,982 + -0.6 159,982 + -1.0 159,982 + +1.7 159,982 + -0.3 159,982 + +0.6 159,982 + +1.1 159,982 + -1.5 159,983 - -3.0 159,983 - +0.4 159,983 - -0.7 159,983 - +0.2 159,983 - -1.6 159,983 - +0.1 159,983 - +0.4 159,983 - +0.1 160,033 + +0.2 160,033 + -1.0 160,033 + +0.2 160,033 + +0.6 160,033 + -0.6 160,070 + +0.3 160,070 + +0.0 160,070 + -0.4 160,071 - +0.0 160,071 - +0.0 160,085 + +0.1 160,086 - -0.2 160,086 - +0.4 160,091 + +0.1 160,208 + EX31_RS22065 0.11 -0.8 160,209 - EX31_RS22065 0.11 -0.2 160,243 + EX31_RS22065 0.13 -0.4 160,243 + EX31_RS22065 0.13 -1.2 160,286 + EX31_RS22065 0.17 +0.7 160,310 + EX31_RS22065 0.19 -0.8 160,437 + EX31_RS22065 0.28 -0.5 160,438 - EX31_RS22065 0.28 -0.5 160,449 + EX31_RS22065 0.29 +0.2 160,450 - EX31_RS22065 0.29 -0.2 160,499 + EX31_RS22065 0.33 -1.2 160,565 - EX31_RS22065 0.38 -0.7 160,606 - EX31_RS22065 0.41 -0.2
Or see this region's nucleotide sequence