Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20690 and EX31_RS20695 are separated by 133 nucleotides EX31_RS20695 and EX31_RS20700 are separated by 114 nucleotides EX31_RS20700 and EX31_RS20705 are separated by 27 nucleotides
EX31_RS20690: EX31_RS20690 - diguanylate cyclase, at 780,387 to 781,949
_RS20690
EX31_RS20695: EX31_RS20695 - Pr2TM family membrane protein, at 782,083 to 782,562
_RS20695
EX31_RS20700: EX31_RS20700 - GNAT family N-acetyltransferase, at 782,677 to 783,168
_RS20700
EX31_RS20705: EX31_RS20705 - LysR family transcriptional regulator, at 783,196 to 784,104
_RS20705
Position (kb) 782
783
784 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 781.716 kb on + strand, within EX31_RS20690 at 781.717 kb on - strand, within EX31_RS20690 at 781.727 kb on + strand, within EX31_RS20690 at 781.729 kb on + strand, within EX31_RS20690 at 781.729 kb on + strand, within EX31_RS20690 at 781.729 kb on + strand, within EX31_RS20690 at 781.729 kb on + strand, within EX31_RS20690 at 781.730 kb on - strand, within EX31_RS20690 at 781.730 kb on - strand, within EX31_RS20690 at 781.730 kb on - strand, within EX31_RS20690 at 781.840 kb on - strand at 781.884 kb on - strand at 781.916 kb on + strand at 781.916 kb on + strand at 781.917 kb on - strand at 781.922 kb on + strand at 781.979 kb on + strand at 781.979 kb on + strand at 781.982 kb on + strand at 781.983 kb on - strand at 781.997 kb on + strand at 781.997 kb on + strand at 781.997 kb on + strand at 781.997 kb on + strand at 781.997 kb on + strand at 781.997 kb on + strand at 781.997 kb on + strand at 781.997 kb on + strand at 781.997 kb on + strand at 781.997 kb on + strand at 781.998 kb on - strand at 781.998 kb on - strand at 781.998 kb on - strand at 781.998 kb on - strand at 781.998 kb on - strand at 781.998 kb on - strand at 781.998 kb on - strand at 782.018 kb on + strand at 782.019 kb on - strand at 782.019 kb on - strand at 782.019 kb on - strand at 782.019 kb on - strand at 782.019 kb on - strand at 782.044 kb on + strand at 782.045 kb on - strand at 782.050 kb on + strand at 782.050 kb on + strand at 782.095 kb on + strand at 782.095 kb on + strand at 782.096 kb on - strand at 782.096 kb on - strand at 782.098 kb on + strand at 782.098 kb on + strand at 782.099 kb on - strand at 782.099 kb on - strand at 782.099 kb on - strand at 782.099 kb on - strand at 782.099 kb on - strand at 782.190 kb on + strand, within EX31_RS20695 at 782.191 kb on - strand, within EX31_RS20695 at 782.191 kb on - strand, within EX31_RS20695 at 782.191 kb on - strand, within EX31_RS20695 at 782.191 kb on - strand, within EX31_RS20695 at 782.191 kb on - strand, within EX31_RS20695 at 782.231 kb on + strand, within EX31_RS20695 at 782.231 kb on + strand, within EX31_RS20695 at 782.231 kb on + strand, within EX31_RS20695 at 782.231 kb on + strand, within EX31_RS20695 at 782.309 kb on - strand, within EX31_RS20695 at 782.315 kb on + strand, within EX31_RS20695 at 782.315 kb on + strand, within EX31_RS20695 at 782.329 kb on + strand, within EX31_RS20695 at 782.404 kb on - strand, within EX31_RS20695 at 782.437 kb on + strand, within EX31_RS20695 at 782.437 kb on + strand, within EX31_RS20695 at 782.437 kb on + strand, within EX31_RS20695 at 782.438 kb on - strand, within EX31_RS20695 at 782.438 kb on - strand, within EX31_RS20695 at 782.438 kb on - strand, within EX31_RS20695 at 782.576 kb on - strand at 782.701 kb on - strand at 782.758 kb on - strand, within EX31_RS20700 at 782.775 kb on - strand, within EX31_RS20700 at 782.867 kb on - strand, within EX31_RS20700 at 782.885 kb on + strand, within EX31_RS20700 at 783.152 kb on - strand at 783.152 kb on - strand at 783.152 kb on - strand at 783.181 kb on + strand at 783.181 kb on + strand at 783.182 kb on - strand at 783.182 kb on - strand at 783.182 kb on - strand at 783.182 kb on - strand at 783.182 kb on - strand at 783.185 kb on + strand at 783.197 kb on + strand at 783.198 kb on - strand at 783.198 kb on - strand at 783.198 kb on - strand at 783.198 kb on - strand at 783.208 kb on + strand at 783.208 kb on + strand at 783.208 kb on + strand at 783.209 kb on - strand at 783.209 kb on - strand at 783.209 kb on - strand at 783.209 kb on - strand at 783.285 kb on + strand at 783.285 kb on + strand at 783.285 kb on + strand at 783.285 kb on + strand at 783.285 kb on + strand at 783.285 kb on + strand at 783.286 kb on - strand at 783.286 kb on - strand at 783.286 kb on - strand at 783.286 kb on - strand at 783.286 kb on - strand at 783.286 kb on - strand at 783.286 kb on - strand at 783.286 kb on - strand at 783.286 kb on - strand at 783.287 kb on + strand, within EX31_RS20705 at 783.288 kb on - strand, within EX31_RS20705 at 783.304 kb on + strand, within EX31_RS20705 at 783.305 kb on - strand, within EX31_RS20705 at 783.305 kb on - strand, within EX31_RS20705 at 783.305 kb on - strand, within EX31_RS20705 at 783.311 kb on + strand, within EX31_RS20705 at 783.312 kb on - strand, within EX31_RS20705 at 783.335 kb on + strand, within EX31_RS20705 at 783.335 kb on + strand, within EX31_RS20705 at 783.335 kb on + strand, within EX31_RS20705 at 783.336 kb on - strand, within EX31_RS20705 at 783.336 kb on - strand, within EX31_RS20705 at 783.336 kb on - strand, within EX31_RS20705 at 783.336 kb on - strand, within EX31_RS20705 at 783.336 kb on - strand, within EX31_RS20705 at 783.336 kb on - strand, within EX31_RS20705 at 783.336 kb on - strand, within EX31_RS20705 at 783.336 kb on - strand, within EX31_RS20705 at 783.336 kb on - strand, within EX31_RS20705 at 783.336 kb on - strand, within EX31_RS20705 at 783.336 kb on - strand, within EX31_RS20705 at 783.336 kb on - strand, within EX31_RS20705 at 783.448 kb on - strand, within EX31_RS20705 at 783.522 kb on + strand, within EX31_RS20705 at 783.525 kb on + strand, within EX31_RS20705 at 783.582 kb on + strand, within EX31_RS20705 at 783.583 kb on - strand, within EX31_RS20705 at 783.583 kb on - strand, within EX31_RS20705 at 783.583 kb on - strand, within EX31_RS20705 at 783.583 kb on - strand, within EX31_RS20705 at 783.583 kb on - strand, within EX31_RS20705 at 783.583 kb on - strand, within EX31_RS20705 at 783.587 kb on + strand, within EX31_RS20705 at 783.587 kb on + strand, within EX31_RS20705 at 783.587 kb on + strand, within EX31_RS20705 at 783.588 kb on - strand, within EX31_RS20705 at 783.588 kb on - strand, within EX31_RS20705 at 783.588 kb on - strand, within EX31_RS20705 at 783.588 kb on - strand, within EX31_RS20705 at 783.588 kb on - strand, within EX31_RS20705 at 783.599 kb on + strand, within EX31_RS20705 at 783.600 kb on - strand, within EX31_RS20705 at 783.620 kb on - strand, within EX31_RS20705 at 783.620 kb on - strand, within EX31_RS20705 at 783.620 kb on - strand, within EX31_RS20705 at 783.620 kb on - strand, within EX31_RS20705 at 783.620 kb on - strand, within EX31_RS20705 at 783.769 kb on - strand, within EX31_RS20705 at 783.769 kb on - strand, within EX31_RS20705 at 783.769 kb on - strand, within EX31_RS20705 at 783.769 kb on - strand, within EX31_RS20705 at 783.794 kb on - strand, within EX31_RS20705 at 783.794 kb on - strand, within EX31_RS20705 at 783.794 kb on - strand, within EX31_RS20705 at 784.003 kb on - strand, within EX31_RS20705 at 784.027 kb on + strand at 784.028 kb on - strand at 784.072 kb on + strand at 784.072 kb on + strand at 784.072 kb on + strand at 784.073 kb on - strand at 784.080 kb on + strand at 784.081 kb on - strand at 784.105 kb on + strand at 784.106 kb on - strand at 784.106 kb on - strand at 784.136 kb on + strand at 784.137 kb on - strand at 784.137 kb on - strand at 784.137 kb on - strand at 784.137 kb on - strand at 784.138 kb on + strand at 784.138 kb on + strand at 784.138 kb on + strand at 784.138 kb on + strand at 784.138 kb on + strand at 784.138 kb on + strand at 784.138 kb on + strand at 784.138 kb on + strand at 784.139 kb on - strand at 784.139 kb on - strand at 784.139 kb on - strand at 784.139 kb on - strand at 784.139 kb on - strand at 784.139 kb on - strand at 784.139 kb on - strand at 784.142 kb on - strand at 784.151 kb on + strand at 784.151 kb on + strand at 784.152 kb on - strand at 784.157 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 781,716 + EX31_RS20690 0.85 +1.2 781,717 - EX31_RS20690 0.85 -1.4 781,727 + EX31_RS20690 0.86 +0.1 781,729 + EX31_RS20690 0.86 -0.1 781,729 + EX31_RS20690 0.86 +0.1 781,729 + EX31_RS20690 0.86 -0.4 781,729 + EX31_RS20690 0.86 +0.2 781,730 - EX31_RS20690 0.86 -1.0 781,730 - EX31_RS20690 0.86 -0.1 781,730 - EX31_RS20690 0.86 +0.6 781,840 - +0.4 781,884 - -3.1 781,916 + +0.7 781,916 + +0.4 781,917 - -0.4 781,922 + +0.1 781,979 + -0.1 781,979 + -0.2 781,982 + -1.3 781,983 - +0.0 781,997 + -0.5 781,997 + +0.7 781,997 + +0.8 781,997 + -0.4 781,997 + +0.6 781,997 + +0.9 781,997 + +0.7 781,997 + -3.0 781,997 + +0.9 781,997 + -1.1 781,998 - +0.2 781,998 - -0.5 781,998 - +1.5 781,998 - -0.6 781,998 - +1.1 781,998 - -0.0 781,998 - -0.7 782,018 + -0.2 782,019 - -0.3 782,019 - -0.3 782,019 - -1.2 782,019 - +0.6 782,019 - -0.4 782,044 + -0.8 782,045 - -0.2 782,050 + +0.0 782,050 + -0.5 782,095 + +1.5 782,095 + -0.7 782,096 - +1.2 782,096 - +1.1 782,098 + -0.3 782,098 + +0.4 782,099 - -0.2 782,099 - -0.4 782,099 - +1.3 782,099 - +0.2 782,099 - -0.8 782,190 + EX31_RS20695 0.22 +1.3 782,191 - EX31_RS20695 0.23 -2.0 782,191 - EX31_RS20695 0.23 +0.5 782,191 - EX31_RS20695 0.23 +0.6 782,191 - EX31_RS20695 0.23 -0.5 782,191 - EX31_RS20695 0.23 -0.1 782,231 + EX31_RS20695 0.31 +0.7 782,231 + EX31_RS20695 0.31 -0.8 782,231 + EX31_RS20695 0.31 -0.8 782,231 + EX31_RS20695 0.31 -1.1 782,309 - EX31_RS20695 0.47 -0.1 782,315 + EX31_RS20695 0.48 -1.5 782,315 + EX31_RS20695 0.48 -0.8 782,329 + EX31_RS20695 0.51 -0.2 782,404 - EX31_RS20695 0.67 -0.1 782,437 + EX31_RS20695 0.74 +0.8 782,437 + EX31_RS20695 0.74 -0.4 782,437 + EX31_RS20695 0.74 +0.9 782,438 - EX31_RS20695 0.74 +0.4 782,438 - EX31_RS20695 0.74 -0.4 782,438 - EX31_RS20695 0.74 -0.9 782,576 - -0.2 782,701 - -1.3 782,758 - EX31_RS20700 0.16 -0.5 782,775 - EX31_RS20700 0.20 -1.9 782,867 - EX31_RS20700 0.39 -0.9 782,885 + EX31_RS20700 0.42 -0.1 783,152 - -0.1 783,152 - -1.1 783,152 - -0.3 783,181 + +0.1 783,181 + -0.4 783,182 - -0.7 783,182 - +0.4 783,182 - +0.3 783,182 - -0.1 783,182 - +0.2 783,185 + +0.0 783,197 + +0.6 783,198 - +0.3 783,198 - -0.0 783,198 - +0.3 783,198 - -1.4 783,208 + -0.7 783,208 + +2.1 783,208 + -0.2 783,209 - +0.0 783,209 - -0.7 783,209 - +0.1 783,209 - -0.8 783,285 + +0.4 783,285 + -1.8 783,285 + -0.5 783,285 + -1.3 783,285 + +1.0 783,285 + -0.1 783,286 - +0.3 783,286 - +1.3 783,286 - -1.9 783,286 - -0.6 783,286 - -0.7 783,286 - -0.8 783,286 - -0.0 783,286 - +0.2 783,286 - -1.9 783,287 + EX31_RS20705 0.10 +0.5 783,288 - EX31_RS20705 0.10 +0.1 783,304 + EX31_RS20705 0.12 +0.9 783,305 - EX31_RS20705 0.12 -0.2 783,305 - EX31_RS20705 0.12 +0.5 783,305 - EX31_RS20705 0.12 -0.8 783,311 + EX31_RS20705 0.13 -0.0 783,312 - EX31_RS20705 0.13 -0.4 783,335 + EX31_RS20705 0.15 -1.0 783,335 + EX31_RS20705 0.15 -0.6 783,335 + EX31_RS20705 0.15 -2.3 783,336 - EX31_RS20705 0.15 -0.7 783,336 - EX31_RS20705 0.15 +0.8 783,336 - EX31_RS20705 0.15 +0.2 783,336 - EX31_RS20705 0.15 -1.1 783,336 - EX31_RS20705 0.15 +1.0 783,336 - EX31_RS20705 0.15 +1.1 783,336 - EX31_RS20705 0.15 +0.9 783,336 - EX31_RS20705 0.15 +0.2 783,336 - EX31_RS20705 0.15 -0.8 783,336 - EX31_RS20705 0.15 -0.2 783,336 - EX31_RS20705 0.15 +0.2 783,336 - EX31_RS20705 0.15 -0.4 783,448 - EX31_RS20705 0.28 +0.7 783,522 + EX31_RS20705 0.36 -0.2 783,525 + EX31_RS20705 0.36 -0.6 783,582 + EX31_RS20705 0.42 -1.1 783,583 - EX31_RS20705 0.43 -2.0 783,583 - EX31_RS20705 0.43 -1.9 783,583 - EX31_RS20705 0.43 +0.6 783,583 - EX31_RS20705 0.43 -0.8 783,583 - EX31_RS20705 0.43 +0.9 783,583 - EX31_RS20705 0.43 -0.0 783,587 + EX31_RS20705 0.43 +0.4 783,587 + EX31_RS20705 0.43 -0.4 783,587 + EX31_RS20705 0.43 -0.0 783,588 - EX31_RS20705 0.43 -0.0 783,588 - EX31_RS20705 0.43 -0.9 783,588 - EX31_RS20705 0.43 +0.4 783,588 - EX31_RS20705 0.43 +1.0 783,588 - EX31_RS20705 0.43 +0.5 783,599 + EX31_RS20705 0.44 +1.3 783,600 - EX31_RS20705 0.44 -0.0 783,620 - EX31_RS20705 0.47 +0.4 783,620 - EX31_RS20705 0.47 -0.3 783,620 - EX31_RS20705 0.47 -0.0 783,620 - EX31_RS20705 0.47 +0.1 783,620 - EX31_RS20705 0.47 -0.9 783,769 - EX31_RS20705 0.63 +0.1 783,769 - EX31_RS20705 0.63 -2.0 783,769 - EX31_RS20705 0.63 +0.3 783,769 - EX31_RS20705 0.63 +0.4 783,794 - EX31_RS20705 0.66 -0.0 783,794 - EX31_RS20705 0.66 -0.5 783,794 - EX31_RS20705 0.66 -0.5 784,003 - EX31_RS20705 0.89 -0.3 784,027 + +1.2 784,028 - +0.0 784,072 + +0.3 784,072 + +0.3 784,072 + -0.9 784,073 - -1.5 784,080 + +0.7 784,081 - -0.2 784,105 + +0.6 784,106 - -0.4 784,106 - +0.4 784,136 + +0.6 784,137 - +0.7 784,137 - +0.4 784,137 - -0.1 784,137 - -0.2 784,138 + -2.8 784,138 + +0.3 784,138 + +1.2 784,138 + -0.3 784,138 + -2.7 784,138 + +1.0 784,138 + -0.5 784,138 + -0.2 784,139 - +0.2 784,139 - +1.0 784,139 - -0.9 784,139 - -0.8 784,139 - +0.2 784,139 - -0.1 784,139 - -0.5 784,142 - -0.1 784,151 + -0.1 784,151 + +0.9 784,152 - +0.0 784,157 - -0.3
Or see this region's nucleotide sequence