Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20535 and EX31_RS20540 are separated by 78 nucleotides EX31_RS20540 and EX31_RS20545 are separated by 81 nucleotides
EX31_RS20535: EX31_RS20535 - enhanced serine sensitivity protein SseB, at 744,427 to 745,290
_RS20535
EX31_RS20540: EX31_RS20540 - aminopeptidase PepB, at 745,369 to 746,679
_RS20540
EX31_RS20545: EX31_RS20545 - IscS subfamily cysteine desulfurase, at 746,761 to 747,930
_RS20545
Position (kb) 745
746
747 Strain fitness (log2 ratio) -2
-1
0
1
2 at 744.369 kb on + strand at 744.369 kb on + strand at 744.370 kb on - strand at 744.370 kb on - strand at 744.370 kb on - strand at 744.370 kb on - strand at 744.428 kb on + strand at 744.428 kb on + strand at 744.428 kb on + strand at 744.429 kb on - strand at 744.429 kb on - strand at 744.450 kb on + strand at 744.450 kb on + strand at 744.450 kb on + strand at 744.451 kb on - strand at 744.451 kb on - strand at 744.451 kb on - strand at 744.451 kb on - strand at 744.453 kb on + strand at 744.485 kb on + strand at 744.485 kb on + strand at 744.486 kb on - strand at 744.512 kb on + strand at 744.512 kb on + strand at 744.512 kb on + strand at 744.513 kb on - strand at 744.702 kb on + strand, within EX31_RS20535 at 744.702 kb on + strand, within EX31_RS20535 at 744.759 kb on + strand, within EX31_RS20535 at 744.760 kb on - strand, within EX31_RS20535 at 744.807 kb on + strand, within EX31_RS20535 at 744.836 kb on - strand, within EX31_RS20535 at 744.891 kb on - strand, within EX31_RS20535 at 745.155 kb on + strand, within EX31_RS20535 at 745.155 kb on + strand, within EX31_RS20535 at 745.297 kb on + strand at 745.306 kb on + strand at 745.312 kb on + strand at 745.313 kb on - strand at 745.313 kb on - strand at 745.314 kb on + strand at 745.315 kb on - strand at 745.330 kb on + strand at 745.370 kb on + strand at 745.370 kb on + strand at 745.371 kb on - strand at 745.385 kb on - strand at 745.460 kb on + strand at 745.497 kb on + strand at 745.497 kb on + strand at 745.497 kb on + strand at 745.497 kb on + strand at 745.497 kb on + strand at 745.498 kb on - strand at 745.498 kb on - strand at 745.498 kb on - strand at 745.498 kb on - strand at 745.498 kb on - strand at 745.499 kb on + strand at 745.500 kb on - strand, within EX31_RS20540 at 745.500 kb on - strand, within EX31_RS20540 at 745.500 kb on - strand, within EX31_RS20540 at 745.500 kb on - strand, within EX31_RS20540 at 745.500 kb on - strand, within EX31_RS20540 at 745.569 kb on + strand, within EX31_RS20540 at 745.590 kb on + strand, within EX31_RS20540 at 745.591 kb on - strand, within EX31_RS20540 at 745.591 kb on - strand, within EX31_RS20540 at 745.858 kb on - strand, within EX31_RS20540 at 745.931 kb on + strand, within EX31_RS20540 at 745.931 kb on + strand, within EX31_RS20540 at 745.931 kb on + strand, within EX31_RS20540 at 745.931 kb on + strand, within EX31_RS20540 at 745.931 kb on + strand, within EX31_RS20540 at 745.932 kb on - strand, within EX31_RS20540 at 745.932 kb on - strand, within EX31_RS20540 at 745.932 kb on - strand, within EX31_RS20540 at 745.932 kb on - strand, within EX31_RS20540 at 745.932 kb on - strand, within EX31_RS20540 at 746.096 kb on + strand, within EX31_RS20540 at 746.097 kb on - strand, within EX31_RS20540 at 746.129 kb on + strand, within EX31_RS20540 at 746.130 kb on - strand, within EX31_RS20540 at 746.130 kb on - strand, within EX31_RS20540 at 746.130 kb on - strand, within EX31_RS20540 at 746.130 kb on - strand, within EX31_RS20540 at 746.144 kb on - strand, within EX31_RS20540 at 746.185 kb on - strand, within EX31_RS20540 at 746.190 kb on + strand, within EX31_RS20540 at 746.190 kb on + strand, within EX31_RS20540 at 746.190 kb on + strand, within EX31_RS20540 at 746.190 kb on + strand, within EX31_RS20540 at 746.191 kb on - strand, within EX31_RS20540 at 746.191 kb on - strand, within EX31_RS20540 at 746.191 kb on - strand, within EX31_RS20540 at 746.191 kb on - strand, within EX31_RS20540 at 746.192 kb on + strand, within EX31_RS20540 at 746.192 kb on + strand, within EX31_RS20540 at 746.192 kb on + strand, within EX31_RS20540 at 746.192 kb on + strand, within EX31_RS20540 at 746.193 kb on - strand, within EX31_RS20540 at 746.193 kb on - strand, within EX31_RS20540 at 746.193 kb on - strand, within EX31_RS20540 at 746.193 kb on - strand, within EX31_RS20540 at 746.193 kb on - strand, within EX31_RS20540 at 746.193 kb on - strand, within EX31_RS20540 at 746.193 kb on - strand, within EX31_RS20540 at 746.193 kb on - strand, within EX31_RS20540 at 746.193 kb on - strand, within EX31_RS20540 at 746.193 kb on - strand, within EX31_RS20540 at 746.231 kb on + strand, within EX31_RS20540 at 746.232 kb on - strand, within EX31_RS20540 at 746.317 kb on - strand, within EX31_RS20540 at 746.319 kb on + strand, within EX31_RS20540 at 746.320 kb on - strand, within EX31_RS20540 at 746.320 kb on - strand, within EX31_RS20540 at 746.320 kb on - strand, within EX31_RS20540 at 746.325 kb on + strand, within EX31_RS20540 at 746.325 kb on + strand, within EX31_RS20540 at 746.326 kb on - strand, within EX31_RS20540 at 746.326 kb on - strand, within EX31_RS20540 at 746.328 kb on + strand, within EX31_RS20540 at 746.328 kb on + strand, within EX31_RS20540 at 746.328 kb on + strand, within EX31_RS20540 at 746.328 kb on + strand, within EX31_RS20540 at 746.328 kb on + strand, within EX31_RS20540 at 746.329 kb on - strand, within EX31_RS20540 at 746.329 kb on - strand, within EX31_RS20540 at 746.329 kb on - strand, within EX31_RS20540 at 746.329 kb on - strand, within EX31_RS20540 at 746.329 kb on - strand, within EX31_RS20540 at 746.329 kb on - strand, within EX31_RS20540 at 746.329 kb on - strand, within EX31_RS20540 at 746.329 kb on - strand, within EX31_RS20540 at 746.329 kb on - strand, within EX31_RS20540 at 746.329 kb on - strand, within EX31_RS20540 at 746.329 kb on - strand, within EX31_RS20540 at 746.329 kb on - strand, within EX31_RS20540 at 746.329 kb on - strand, within EX31_RS20540 at 746.361 kb on + strand, within EX31_RS20540 at 746.451 kb on + strand, within EX31_RS20540 at 746.452 kb on - strand, within EX31_RS20540 at 746.452 kb on - strand, within EX31_RS20540 at 746.494 kb on - strand, within EX31_RS20540 at 746.679 kb on + strand at 746.714 kb on + strand at 746.714 kb on + strand at 746.715 kb on - strand at 746.715 kb on - strand at 746.715 kb on - strand at 746.769 kb on + strand at 746.770 kb on - strand at 746.771 kb on + strand at 746.771 kb on + strand at 746.771 kb on + strand at 746.772 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 744,369 + +0.8 744,369 + +0.1 744,370 - -0.1 744,370 - +1.4 744,370 - +0.3 744,370 - -1.6 744,428 + +1.1 744,428 + +0.6 744,428 + -0.9 744,429 - +0.4 744,429 - +0.3 744,450 + -0.9 744,450 + -0.1 744,450 + -0.9 744,451 - -1.4 744,451 - -1.0 744,451 - -1.1 744,451 - -0.0 744,453 + -0.0 744,485 + +1.3 744,485 + -0.6 744,486 - -0.1 744,512 + -0.5 744,512 + +0.3 744,512 + +0.2 744,513 - -0.6 744,702 + EX31_RS20535 0.32 -0.7 744,702 + EX31_RS20535 0.32 -1.9 744,759 + EX31_RS20535 0.38 +1.3 744,760 - EX31_RS20535 0.39 -0.2 744,807 + EX31_RS20535 0.44 -1.0 744,836 - EX31_RS20535 0.47 -0.0 744,891 - EX31_RS20535 0.54 -0.3 745,155 + EX31_RS20535 0.84 +0.5 745,155 + EX31_RS20535 0.84 -0.5 745,297 + -0.0 745,306 + +0.3 745,312 + -0.1 745,313 - -0.3 745,313 - -0.5 745,314 + -0.2 745,315 - -0.1 745,330 + -2.6 745,370 + +0.2 745,370 + +0.5 745,371 - -1.1 745,385 - -1.4 745,460 + +0.4 745,497 + +1.1 745,497 + -1.3 745,497 + +0.8 745,497 + +0.4 745,497 + -0.4 745,498 - -0.5 745,498 - +0.3 745,498 - -0.2 745,498 - +0.1 745,498 - -0.2 745,499 + -0.7 745,500 - EX31_RS20540 0.10 -1.2 745,500 - EX31_RS20540 0.10 +0.3 745,500 - EX31_RS20540 0.10 +0.5 745,500 - EX31_RS20540 0.10 -0.6 745,500 - EX31_RS20540 0.10 -1.9 745,569 + EX31_RS20540 0.15 +0.6 745,590 + EX31_RS20540 0.17 -0.9 745,591 - EX31_RS20540 0.17 +0.5 745,591 - EX31_RS20540 0.17 +0.3 745,858 - EX31_RS20540 0.37 +0.6 745,931 + EX31_RS20540 0.43 -0.2 745,931 + EX31_RS20540 0.43 -0.2 745,931 + EX31_RS20540 0.43 +1.4 745,931 + EX31_RS20540 0.43 -2.4 745,931 + EX31_RS20540 0.43 +0.2 745,932 - EX31_RS20540 0.43 -0.6 745,932 - EX31_RS20540 0.43 +0.6 745,932 - EX31_RS20540 0.43 -0.3 745,932 - EX31_RS20540 0.43 +0.9 745,932 - EX31_RS20540 0.43 +0.4 746,096 + EX31_RS20540 0.55 +2.1 746,097 - EX31_RS20540 0.56 +1.7 746,129 + EX31_RS20540 0.58 +1.1 746,130 - EX31_RS20540 0.58 +0.5 746,130 - EX31_RS20540 0.58 -0.3 746,130 - EX31_RS20540 0.58 +0.5 746,130 - EX31_RS20540 0.58 -0.8 746,144 - EX31_RS20540 0.59 -0.3 746,185 - EX31_RS20540 0.62 +0.4 746,190 + EX31_RS20540 0.63 +0.4 746,190 + EX31_RS20540 0.63 -0.0 746,190 + EX31_RS20540 0.63 +0.2 746,190 + EX31_RS20540 0.63 -2.0 746,191 - EX31_RS20540 0.63 -0.1 746,191 - EX31_RS20540 0.63 +0.2 746,191 - EX31_RS20540 0.63 +0.0 746,191 - EX31_RS20540 0.63 -0.5 746,192 + EX31_RS20540 0.63 -0.5 746,192 + EX31_RS20540 0.63 -1.6 746,192 + EX31_RS20540 0.63 +0.9 746,192 + EX31_RS20540 0.63 +0.0 746,193 - EX31_RS20540 0.63 +1.8 746,193 - EX31_RS20540 0.63 -0.9 746,193 - EX31_RS20540 0.63 +1.5 746,193 - EX31_RS20540 0.63 -0.4 746,193 - EX31_RS20540 0.63 +0.7 746,193 - EX31_RS20540 0.63 -0.1 746,193 - EX31_RS20540 0.63 +0.2 746,193 - EX31_RS20540 0.63 -0.5 746,193 - EX31_RS20540 0.63 +0.2 746,193 - EX31_RS20540 0.63 +0.4 746,231 + EX31_RS20540 0.66 -0.5 746,232 - EX31_RS20540 0.66 +0.5 746,317 - EX31_RS20540 0.72 +1.6 746,319 + EX31_RS20540 0.72 +0.6 746,320 - EX31_RS20540 0.73 -0.8 746,320 - EX31_RS20540 0.73 -1.2 746,320 - EX31_RS20540 0.73 +0.7 746,325 + EX31_RS20540 0.73 +0.5 746,325 + EX31_RS20540 0.73 +2.2 746,326 - EX31_RS20540 0.73 -0.6 746,326 - EX31_RS20540 0.73 +0.7 746,328 + EX31_RS20540 0.73 +1.6 746,328 + EX31_RS20540 0.73 +0.0 746,328 + EX31_RS20540 0.73 +1.7 746,328 + EX31_RS20540 0.73 +0.3 746,328 + EX31_RS20540 0.73 +0.3 746,329 - EX31_RS20540 0.73 +0.4 746,329 - EX31_RS20540 0.73 -1.0 746,329 - EX31_RS20540 0.73 -0.5 746,329 - EX31_RS20540 0.73 -1.1 746,329 - EX31_RS20540 0.73 -0.3 746,329 - EX31_RS20540 0.73 +0.7 746,329 - EX31_RS20540 0.73 -1.8 746,329 - EX31_RS20540 0.73 -0.2 746,329 - EX31_RS20540 0.73 -0.0 746,329 - EX31_RS20540 0.73 -0.4 746,329 - EX31_RS20540 0.73 +0.8 746,329 - EX31_RS20540 0.73 -0.0 746,329 - EX31_RS20540 0.73 +0.3 746,361 + EX31_RS20540 0.76 +0.0 746,451 + EX31_RS20540 0.83 +0.8 746,452 - EX31_RS20540 0.83 +0.7 746,452 - EX31_RS20540 0.83 +1.2 746,494 - EX31_RS20540 0.86 +2.0 746,679 + +0.6 746,714 + -1.0 746,714 + -1.5 746,715 - +1.4 746,715 - -0.0 746,715 - +0.1 746,769 + +0.3 746,770 - +0.1 746,771 + -0.1 746,771 + +1.2 746,771 + +1.0 746,772 - -0.2
Or see this region's nucleotide sequence