Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20475 and EX31_RS20480 are separated by 0 nucleotides EX31_RS20480 and EX31_RS25580 overlap by 16 nucleotides EX31_RS25580 and EX31_RS20485 are separated by 11 nucleotides
EX31_RS20475: EX31_RS20475 - peptidase M4 family protein, at 731,807 to 732,841
_RS20475
EX31_RS20480: EX31_RS20480 - hypothetical protein, at 732,842 to 733,186
_RS20480
EX31_RS25580: EX31_RS25580 - primosomal protein N, at 733,171 to 733,401
_RS25580
EX31_RS20485: EX31_RS20485 - AEC family transporter, at 733,413 to 734,369
_RS20485
Position (kb) 732
733
734 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 731.852 kb on + strand at 731.852 kb on + strand at 731.852 kb on + strand at 731.852 kb on + strand at 731.852 kb on + strand at 731.852 kb on + strand at 731.853 kb on - strand at 731.853 kb on - strand at 731.853 kb on - strand at 731.860 kb on + strand at 731.861 kb on - strand at 731.866 kb on + strand at 731.867 kb on - strand at 731.870 kb on - strand at 731.870 kb on - strand at 731.870 kb on - strand at 731.919 kb on + strand, within EX31_RS20475 at 731.919 kb on + strand, within EX31_RS20475 at 731.919 kb on + strand, within EX31_RS20475 at 731.920 kb on - strand, within EX31_RS20475 at 731.920 kb on - strand, within EX31_RS20475 at 731.920 kb on - strand, within EX31_RS20475 at 731.948 kb on + strand, within EX31_RS20475 at 732.001 kb on + strand, within EX31_RS20475 at 732.001 kb on + strand, within EX31_RS20475 at 732.002 kb on - strand, within EX31_RS20475 at 732.005 kb on + strand, within EX31_RS20475 at 732.005 kb on + strand, within EX31_RS20475 at 732.005 kb on + strand, within EX31_RS20475 at 732.005 kb on + strand, within EX31_RS20475 at 732.005 kb on + strand, within EX31_RS20475 at 732.005 kb on + strand, within EX31_RS20475 at 732.005 kb on + strand, within EX31_RS20475 at 732.005 kb on + strand, within EX31_RS20475 at 732.049 kb on + strand, within EX31_RS20475 at 732.050 kb on - strand, within EX31_RS20475 at 732.095 kb on + strand, within EX31_RS20475 at 732.095 kb on + strand, within EX31_RS20475 at 732.096 kb on - strand, within EX31_RS20475 at 732.096 kb on - strand, within EX31_RS20475 at 732.096 kb on - strand, within EX31_RS20475 at 732.101 kb on + strand, within EX31_RS20475 at 732.101 kb on + strand, within EX31_RS20475 at 732.101 kb on + strand, within EX31_RS20475 at 732.101 kb on + strand, within EX31_RS20475 at 732.102 kb on - strand, within EX31_RS20475 at 732.137 kb on + strand, within EX31_RS20475 at 732.186 kb on + strand, within EX31_RS20475 at 732.187 kb on - strand, within EX31_RS20475 at 732.187 kb on - strand, within EX31_RS20475 at 732.344 kb on + strand, within EX31_RS20475 at 732.344 kb on + strand, within EX31_RS20475 at 732.344 kb on + strand, within EX31_RS20475 at 732.344 kb on + strand, within EX31_RS20475 at 732.344 kb on + strand, within EX31_RS20475 at 732.345 kb on - strand, within EX31_RS20475 at 732.345 kb on - strand, within EX31_RS20475 at 732.346 kb on + strand, within EX31_RS20475 at 732.346 kb on + strand, within EX31_RS20475 at 732.346 kb on + strand, within EX31_RS20475 at 732.449 kb on - strand, within EX31_RS20475 at 732.499 kb on + strand, within EX31_RS20475 at 732.499 kb on + strand, within EX31_RS20475 at 732.499 kb on + strand, within EX31_RS20475 at 732.499 kb on + strand, within EX31_RS20475 at 732.499 kb on + strand, within EX31_RS20475 at 732.499 kb on + strand, within EX31_RS20475 at 732.499 kb on + strand, within EX31_RS20475 at 732.499 kb on + strand, within EX31_RS20475 at 732.499 kb on + strand, within EX31_RS20475 at 732.499 kb on + strand, within EX31_RS20475 at 732.499 kb on + strand, within EX31_RS20475 at 732.499 kb on + strand, within EX31_RS20475 at 732.499 kb on + strand, within EX31_RS20475 at 732.499 kb on + strand, within EX31_RS20475 at 732.499 kb on + strand, within EX31_RS20475 at 732.499 kb on + strand, within EX31_RS20475 at 732.500 kb on - strand, within EX31_RS20475 at 732.500 kb on - strand, within EX31_RS20475 at 732.500 kb on - strand, within EX31_RS20475 at 732.500 kb on - strand, within EX31_RS20475 at 732.500 kb on - strand, within EX31_RS20475 at 732.500 kb on - strand, within EX31_RS20475 at 732.521 kb on + strand, within EX31_RS20475 at 732.521 kb on + strand, within EX31_RS20475 at 732.572 kb on + strand, within EX31_RS20475 at 732.573 kb on - strand, within EX31_RS20475 at 732.610 kb on + strand, within EX31_RS20475 at 732.610 kb on + strand, within EX31_RS20475 at 732.611 kb on - strand, within EX31_RS20475 at 732.611 kb on - strand, within EX31_RS20475 at 732.621 kb on + strand, within EX31_RS20475 at 732.621 kb on + strand, within EX31_RS20475 at 732.621 kb on + strand, within EX31_RS20475 at 732.621 kb on + strand, within EX31_RS20475 at 732.621 kb on + strand, within EX31_RS20475 at 732.621 kb on + strand, within EX31_RS20475 at 732.622 kb on - strand, within EX31_RS20475 at 732.622 kb on - strand, within EX31_RS20475 at 732.625 kb on + strand, within EX31_RS20475 at 732.625 kb on + strand, within EX31_RS20475 at 732.625 kb on + strand, within EX31_RS20475 at 732.639 kb on - strand, within EX31_RS20475 at 732.686 kb on + strand, within EX31_RS20475 at 732.686 kb on + strand, within EX31_RS20475 at 732.686 kb on + strand, within EX31_RS20475 at 732.686 kb on + strand, within EX31_RS20475 at 732.687 kb on - strand, within EX31_RS20475 at 732.696 kb on - strand, within EX31_RS20475 at 732.696 kb on - strand, within EX31_RS20475 at 732.696 kb on - strand, within EX31_RS20475 at 732.839 kb on + strand at 732.839 kb on + strand at 732.839 kb on + strand at 732.839 kb on + strand at 732.840 kb on - strand at 732.840 kb on - strand at 732.853 kb on - strand at 732.868 kb on + strand at 732.868 kb on + strand at 732.868 kb on + strand at 732.953 kb on - strand, within EX31_RS20480 at 732.964 kb on + strand, within EX31_RS20480 at 733.007 kb on + strand, within EX31_RS20480 at 733.007 kb on + strand, within EX31_RS20480 at 733.007 kb on + strand, within EX31_RS20480 at 733.007 kb on + strand, within EX31_RS20480 at 733.050 kb on - strand, within EX31_RS20480 at 733.050 kb on - strand, within EX31_RS20480 at 733.067 kb on + strand, within EX31_RS20480 at 733.067 kb on + strand, within EX31_RS20480 at 733.067 kb on + strand, within EX31_RS20480 at 733.067 kb on + strand, within EX31_RS20480 at 733.067 kb on + strand, within EX31_RS20480 at 733.067 kb on + strand, within EX31_RS20480 at 733.068 kb on - strand, within EX31_RS20480 at 733.068 kb on - strand, within EX31_RS20480 at 733.068 kb on - strand, within EX31_RS20480 at 733.068 kb on - strand, within EX31_RS20480 at 733.068 kb on - strand, within EX31_RS20480 at 733.070 kb on + strand, within EX31_RS20480 at 733.071 kb on - strand, within EX31_RS20480 at 733.071 kb on - strand, within EX31_RS20480 at 733.108 kb on + strand, within EX31_RS20480 at 733.109 kb on - strand, within EX31_RS20480 at 733.184 kb on + strand at 733.193 kb on + strand at 733.194 kb on - strand, within EX31_RS25580 at 733.194 kb on - strand, within EX31_RS25580 at 733.198 kb on - strand, within EX31_RS25580 at 733.198 kb on - strand, within EX31_RS25580 at 733.198 kb on - strand, within EX31_RS25580 at 733.247 kb on + strand, within EX31_RS25580 at 733.248 kb on - strand, within EX31_RS25580 at 733.248 kb on - strand, within EX31_RS25580 at 733.248 kb on - strand, within EX31_RS25580 at 733.248 kb on - strand, within EX31_RS25580 at 733.253 kb on - strand, within EX31_RS25580 at 733.358 kb on - strand, within EX31_RS25580 at 733.406 kb on + strand at 733.406 kb on + strand at 733.414 kb on + strand at 733.415 kb on - strand at 733.418 kb on + strand at 733.418 kb on + strand at 733.419 kb on - strand at 733.419 kb on - strand at 733.419 kb on - strand at 733.437 kb on + strand at 733.437 kb on + strand at 733.437 kb on + strand at 733.438 kb on - strand at 733.438 kb on - strand at 733.442 kb on - strand at 733.442 kb on - strand at 733.442 kb on - strand at 733.442 kb on - strand at 733.490 kb on + strand at 733.490 kb on + strand at 733.491 kb on - strand at 733.491 kb on - strand at 733.493 kb on + strand at 733.494 kb on - strand at 733.541 kb on - strand, within EX31_RS20485 at 733.541 kb on - strand, within EX31_RS20485 at 733.541 kb on - strand, within EX31_RS20485 at 733.578 kb on + strand, within EX31_RS20485 at 733.578 kb on + strand, within EX31_RS20485 at 733.578 kb on + strand, within EX31_RS20485 at 733.578 kb on + strand, within EX31_RS20485 at 733.579 kb on - strand, within EX31_RS20485 at 733.579 kb on - strand, within EX31_RS20485 at 733.579 kb on - strand, within EX31_RS20485 at 733.579 kb on - strand, within EX31_RS20485 at 733.579 kb on - strand, within EX31_RS20485 at 733.647 kb on + strand, within EX31_RS20485 at 733.647 kb on + strand, within EX31_RS20485 at 733.728 kb on + strand, within EX31_RS20485 at 733.728 kb on + strand, within EX31_RS20485 at 733.728 kb on + strand, within EX31_RS20485 at 733.728 kb on + strand, within EX31_RS20485 at 733.728 kb on + strand, within EX31_RS20485 at 733.728 kb on + strand, within EX31_RS20485 at 733.728 kb on + strand, within EX31_RS20485 at 733.729 kb on - strand, within EX31_RS20485 at 733.729 kb on - strand, within EX31_RS20485 at 733.798 kb on - strand, within EX31_RS20485 at 733.798 kb on - strand, within EX31_RS20485 at 733.807 kb on + strand, within EX31_RS20485 at 733.808 kb on - strand, within EX31_RS20485 at 733.808 kb on - strand, within EX31_RS20485 at 733.812 kb on - strand, within EX31_RS20485 at 733.889 kb on + strand, within EX31_RS20485 at 733.890 kb on - strand, within EX31_RS20485 at 733.925 kb on + strand, within EX31_RS20485 at 733.969 kb on + strand, within EX31_RS20485 at 733.969 kb on + strand, within EX31_RS20485 at 733.970 kb on - strand, within EX31_RS20485 at 733.989 kb on - strand, within EX31_RS20485 at 734.017 kb on + strand, within EX31_RS20485 at 734.100 kb on + strand, within EX31_RS20485 at 734.101 kb on - strand, within EX31_RS20485 at 734.153 kb on - strand, within EX31_RS20485 at 734.153 kb on - strand, within EX31_RS20485 at 734.153 kb on - strand, within EX31_RS20485 at 734.153 kb on - strand, within EX31_RS20485 at 734.153 kb on - strand, within EX31_RS20485
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 731,852 + -2.9 731,852 + +0.8 731,852 + -1.1 731,852 + -2.7 731,852 + -0.1 731,852 + +0.1 731,853 - +0.3 731,853 - -0.5 731,853 - +1.1 731,860 + -0.6 731,861 - +3.6 731,866 + +0.1 731,867 - +0.2 731,870 - +1.2 731,870 - +0.6 731,870 - +1.0 731,919 + EX31_RS20475 0.11 -2.1 731,919 + EX31_RS20475 0.11 +1.3 731,919 + EX31_RS20475 0.11 -0.5 731,920 - EX31_RS20475 0.11 -0.3 731,920 - EX31_RS20475 0.11 +1.1 731,920 - EX31_RS20475 0.11 -0.2 731,948 + EX31_RS20475 0.14 +0.6 732,001 + EX31_RS20475 0.19 +0.7 732,001 + EX31_RS20475 0.19 +0.5 732,002 - EX31_RS20475 0.19 +0.3 732,005 + EX31_RS20475 0.19 +0.7 732,005 + EX31_RS20475 0.19 -1.3 732,005 + EX31_RS20475 0.19 +0.6 732,005 + EX31_RS20475 0.19 +0.9 732,005 + EX31_RS20475 0.19 +1.6 732,005 + EX31_RS20475 0.19 +0.4 732,005 + EX31_RS20475 0.19 +0.3 732,005 + EX31_RS20475 0.19 +0.1 732,049 + EX31_RS20475 0.23 +0.4 732,050 - EX31_RS20475 0.23 +0.3 732,095 + EX31_RS20475 0.28 -0.2 732,095 + EX31_RS20475 0.28 -2.4 732,096 - EX31_RS20475 0.28 +0.9 732,096 - EX31_RS20475 0.28 -0.0 732,096 - EX31_RS20475 0.28 -0.7 732,101 + EX31_RS20475 0.28 -0.7 732,101 + EX31_RS20475 0.28 -0.6 732,101 + EX31_RS20475 0.28 -0.6 732,101 + EX31_RS20475 0.28 -0.4 732,102 - EX31_RS20475 0.29 +0.3 732,137 + EX31_RS20475 0.32 +1.0 732,186 + EX31_RS20475 0.37 +0.2 732,187 - EX31_RS20475 0.37 +0.7 732,187 - EX31_RS20475 0.37 -1.9 732,344 + EX31_RS20475 0.52 -1.8 732,344 + EX31_RS20475 0.52 -0.3 732,344 + EX31_RS20475 0.52 -0.5 732,344 + EX31_RS20475 0.52 +0.3 732,344 + EX31_RS20475 0.52 -2.0 732,345 - EX31_RS20475 0.52 +0.2 732,345 - EX31_RS20475 0.52 -0.5 732,346 + EX31_RS20475 0.52 +1.1 732,346 + EX31_RS20475 0.52 -0.0 732,346 + EX31_RS20475 0.52 -0.5 732,449 - EX31_RS20475 0.62 +0.1 732,499 + EX31_RS20475 0.67 -0.3 732,499 + EX31_RS20475 0.67 +1.0 732,499 + EX31_RS20475 0.67 +0.5 732,499 + EX31_RS20475 0.67 +0.4 732,499 + EX31_RS20475 0.67 -0.0 732,499 + EX31_RS20475 0.67 -0.1 732,499 + EX31_RS20475 0.67 +0.9 732,499 + EX31_RS20475 0.67 +0.4 732,499 + EX31_RS20475 0.67 -0.7 732,499 + EX31_RS20475 0.67 +0.9 732,499 + EX31_RS20475 0.67 -1.1 732,499 + EX31_RS20475 0.67 -0.8 732,499 + EX31_RS20475 0.67 -1.1 732,499 + EX31_RS20475 0.67 -0.9 732,499 + EX31_RS20475 0.67 +0.6 732,499 + EX31_RS20475 0.67 +2.0 732,500 - EX31_RS20475 0.67 -0.9 732,500 - EX31_RS20475 0.67 -0.6 732,500 - EX31_RS20475 0.67 -0.6 732,500 - EX31_RS20475 0.67 +0.7 732,500 - EX31_RS20475 0.67 +0.5 732,500 - EX31_RS20475 0.67 -0.3 732,521 + EX31_RS20475 0.69 -1.9 732,521 + EX31_RS20475 0.69 -0.2 732,572 + EX31_RS20475 0.74 +0.4 732,573 - EX31_RS20475 0.74 -1.6 732,610 + EX31_RS20475 0.78 -1.2 732,610 + EX31_RS20475 0.78 -0.3 732,611 - EX31_RS20475 0.78 +0.2 732,611 - EX31_RS20475 0.78 -1.3 732,621 + EX31_RS20475 0.79 -0.1 732,621 + EX31_RS20475 0.79 -0.2 732,621 + EX31_RS20475 0.79 -1.7 732,621 + EX31_RS20475 0.79 +0.8 732,621 + EX31_RS20475 0.79 +0.5 732,621 + EX31_RS20475 0.79 -1.4 732,622 - EX31_RS20475 0.79 +0.9 732,622 - EX31_RS20475 0.79 -0.0 732,625 + EX31_RS20475 0.79 +1.5 732,625 + EX31_RS20475 0.79 -0.4 732,625 + EX31_RS20475 0.79 -0.5 732,639 - EX31_RS20475 0.80 +0.2 732,686 + EX31_RS20475 0.85 +0.3 732,686 + EX31_RS20475 0.85 +0.2 732,686 + EX31_RS20475 0.85 -0.5 732,686 + EX31_RS20475 0.85 -0.4 732,687 - EX31_RS20475 0.85 +2.0 732,696 - EX31_RS20475 0.86 -1.7 732,696 - EX31_RS20475 0.86 +0.6 732,696 - EX31_RS20475 0.86 -0.5 732,839 + +0.2 732,839 + +0.4 732,839 + +1.0 732,839 + +0.2 732,840 - +0.8 732,840 - +0.5 732,853 - -1.5 732,868 + +1.8 732,868 + +1.2 732,868 + +1.6 732,953 - EX31_RS20480 0.32 +0.9 732,964 + EX31_RS20480 0.35 +0.9 733,007 + EX31_RS20480 0.48 +1.3 733,007 + EX31_RS20480 0.48 +0.7 733,007 + EX31_RS20480 0.48 +1.4 733,007 + EX31_RS20480 0.48 +1.8 733,050 - EX31_RS20480 0.60 +0.3 733,050 - EX31_RS20480 0.60 +0.5 733,067 + EX31_RS20480 0.65 +0.4 733,067 + EX31_RS20480 0.65 +1.6 733,067 + EX31_RS20480 0.65 +1.5 733,067 + EX31_RS20480 0.65 +1.8 733,067 + EX31_RS20480 0.65 +1.7 733,067 + EX31_RS20480 0.65 +0.5 733,068 - EX31_RS20480 0.66 +1.7 733,068 - EX31_RS20480 0.66 +1.4 733,068 - EX31_RS20480 0.66 +1.1 733,068 - EX31_RS20480 0.66 +0.5 733,068 - EX31_RS20480 0.66 +0.5 733,070 + EX31_RS20480 0.66 +0.5 733,071 - EX31_RS20480 0.66 +1.1 733,071 - EX31_RS20480 0.66 +1.3 733,108 + EX31_RS20480 0.77 +2.2 733,109 - EX31_RS20480 0.77 +0.5 733,184 + +0.5 733,193 + +1.3 733,194 - EX31_RS25580 0.10 +0.2 733,194 - EX31_RS25580 0.10 +0.9 733,198 - EX31_RS25580 0.12 +0.4 733,198 - EX31_RS25580 0.12 -0.2 733,198 - EX31_RS25580 0.12 -0.1 733,247 + EX31_RS25580 0.33 +0.3 733,248 - EX31_RS25580 0.33 +0.3 733,248 - EX31_RS25580 0.33 -1.1 733,248 - EX31_RS25580 0.33 +0.7 733,248 - EX31_RS25580 0.33 +1.0 733,253 - EX31_RS25580 0.35 -1.2 733,358 - EX31_RS25580 0.81 +0.5 733,406 + -0.1 733,406 + -2.0 733,414 + +0.5 733,415 - -0.3 733,418 + +2.4 733,418 + -0.5 733,419 - -0.2 733,419 - -0.8 733,419 - +0.6 733,437 + +1.1 733,437 + -1.4 733,437 + +1.0 733,438 - -1.5 733,438 - +0.8 733,442 - +0.7 733,442 - -0.8 733,442 - +1.3 733,442 - -0.4 733,490 + -0.3 733,490 + +0.4 733,491 - -0.2 733,491 - -1.0 733,493 + +1.2 733,494 - -1.5 733,541 - EX31_RS20485 0.13 +0.4 733,541 - EX31_RS20485 0.13 -0.3 733,541 - EX31_RS20485 0.13 +1.3 733,578 + EX31_RS20485 0.17 +0.2 733,578 + EX31_RS20485 0.17 +0.0 733,578 + EX31_RS20485 0.17 -0.4 733,578 + EX31_RS20485 0.17 -0.5 733,579 - EX31_RS20485 0.17 -1.0 733,579 - EX31_RS20485 0.17 -0.7 733,579 - EX31_RS20485 0.17 +0.4 733,579 - EX31_RS20485 0.17 -0.3 733,579 - EX31_RS20485 0.17 -0.2 733,647 + EX31_RS20485 0.24 -1.8 733,647 + EX31_RS20485 0.24 -0.6 733,728 + EX31_RS20485 0.33 -0.3 733,728 + EX31_RS20485 0.33 -2.2 733,728 + EX31_RS20485 0.33 +0.2 733,728 + EX31_RS20485 0.33 -0.2 733,728 + EX31_RS20485 0.33 +1.3 733,728 + EX31_RS20485 0.33 -1.9 733,728 + EX31_RS20485 0.33 -0.3 733,729 - EX31_RS20485 0.33 -0.4 733,729 - EX31_RS20485 0.33 +0.3 733,798 - EX31_RS20485 0.40 -0.3 733,798 - EX31_RS20485 0.40 -1.6 733,807 + EX31_RS20485 0.41 +0.1 733,808 - EX31_RS20485 0.41 -2.8 733,808 - EX31_RS20485 0.41 -1.2 733,812 - EX31_RS20485 0.42 +0.1 733,889 + EX31_RS20485 0.50 -0.1 733,890 - EX31_RS20485 0.50 +1.3 733,925 + EX31_RS20485 0.54 +0.7 733,969 + EX31_RS20485 0.58 +0.1 733,969 + EX31_RS20485 0.58 +1.3 733,970 - EX31_RS20485 0.58 +0.6 733,989 - EX31_RS20485 0.60 -0.7 734,017 + EX31_RS20485 0.63 -0.5 734,100 + EX31_RS20485 0.72 +1.0 734,101 - EX31_RS20485 0.72 +1.4 734,153 - EX31_RS20485 0.77 +0.8 734,153 - EX31_RS20485 0.77 +0.1 734,153 - EX31_RS20485 0.77 -0.3 734,153 - EX31_RS20485 0.77 -1.3 734,153 - EX31_RS20485 0.77 -0.4
Or see this region's nucleotide sequence