Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19360 and EX31_RS19365 are separated by 235 nucleotides EX31_RS19365 and EX31_RS19370 are separated by 112 nucleotides EX31_RS19370 and EX31_RS19375 are separated by 192 nucleotides
EX31_RS19360: EX31_RS19360 - isochorismate synthase MenF, at 498,455 to 499,792
_RS19360
EX31_RS19365: EX31_RS19365 - stress response protein ElaB, at 500,028 to 500,336
_RS19365
EX31_RS19370: EX31_RS19370 - DUF1097 domain-containing protein, at 500,449 to 500,964
_RS19370
EX31_RS19375: EX31_RS19375 - NADH-quinone oxidoreductase subunit NuoN, at 501,157 to 502,617
_RS19375
Position (kb) 500
501 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 499.049 kb on + strand, within EX31_RS19360 at 499.050 kb on - strand, within EX31_RS19360 at 499.050 kb on - strand, within EX31_RS19360 at 499.110 kb on + strand, within EX31_RS19360 at 499.124 kb on - strand, within EX31_RS19360 at 499.247 kb on + strand, within EX31_RS19360 at 499.247 kb on + strand, within EX31_RS19360 at 499.247 kb on + strand, within EX31_RS19360 at 499.248 kb on - strand, within EX31_RS19360 at 499.277 kb on + strand, within EX31_RS19360 at 499.295 kb on + strand, within EX31_RS19360 at 499.295 kb on + strand, within EX31_RS19360 at 499.295 kb on + strand, within EX31_RS19360 at 499.349 kb on + strand, within EX31_RS19360 at 499.349 kb on + strand, within EX31_RS19360 at 499.350 kb on - strand, within EX31_RS19360 at 499.400 kb on - strand, within EX31_RS19360 at 499.414 kb on - strand, within EX31_RS19360 at 499.414 kb on - strand, within EX31_RS19360 at 499.469 kb on + strand, within EX31_RS19360 at 499.469 kb on + strand, within EX31_RS19360 at 499.469 kb on + strand, within EX31_RS19360 at 499.469 kb on + strand, within EX31_RS19360 at 499.470 kb on - strand, within EX31_RS19360 at 499.513 kb on + strand, within EX31_RS19360 at 499.582 kb on - strand, within EX31_RS19360 at 499.632 kb on + strand, within EX31_RS19360 at 499.705 kb on - strand at 499.757 kb on - strand at 499.781 kb on + strand at 499.819 kb on + strand at 499.819 kb on + strand at 499.819 kb on + strand at 499.869 kb on + strand at 499.870 kb on - strand at 499.880 kb on + strand at 499.905 kb on + strand at 499.938 kb on - strand at 499.941 kb on + strand at 499.941 kb on + strand at 499.941 kb on + strand at 499.941 kb on + strand at 499.941 kb on + strand at 499.942 kb on - strand at 499.942 kb on - strand at 499.951 kb on + strand at 499.951 kb on + strand at 499.951 kb on + strand at 499.951 kb on + strand at 499.951 kb on + strand at 499.952 kb on - strand at 499.953 kb on + strand at 499.953 kb on + strand at 499.953 kb on + strand at 499.953 kb on + strand at 499.953 kb on + strand at 499.954 kb on - strand at 499.971 kb on + strand at 499.971 kb on + strand at 500.062 kb on - strand, within EX31_RS19365 at 500.107 kb on + strand, within EX31_RS19365 at 500.108 kb on - strand, within EX31_RS19365 at 500.108 kb on - strand, within EX31_RS19365 at 500.108 kb on - strand, within EX31_RS19365 at 500.108 kb on - strand, within EX31_RS19365 at 500.172 kb on - strand, within EX31_RS19365 at 500.225 kb on - strand, within EX31_RS19365 at 500.225 kb on - strand, within EX31_RS19365 at 500.290 kb on - strand, within EX31_RS19365 at 500.290 kb on - strand, within EX31_RS19365 at 500.290 kb on - strand, within EX31_RS19365 at 500.348 kb on + strand at 500.372 kb on - strand at 500.372 kb on - strand at 500.372 kb on - strand at 500.393 kb on + strand at 500.393 kb on + strand at 500.393 kb on + strand at 500.393 kb on + strand at 500.393 kb on + strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.405 kb on - strand at 500.405 kb on - strand at 500.427 kb on - strand at 500.427 kb on - strand at 500.588 kb on - strand, within EX31_RS19370 at 500.640 kb on + strand, within EX31_RS19370 at 500.653 kb on + strand, within EX31_RS19370 at 500.685 kb on + strand, within EX31_RS19370 at 500.685 kb on + strand, within EX31_RS19370 at 500.685 kb on + strand, within EX31_RS19370 at 500.686 kb on - strand, within EX31_RS19370 at 500.782 kb on + strand, within EX31_RS19370 at 500.783 kb on - strand, within EX31_RS19370 at 500.783 kb on - strand, within EX31_RS19370 at 500.850 kb on - strand, within EX31_RS19370 at 500.881 kb on + strand, within EX31_RS19370 at 500.895 kb on + strand, within EX31_RS19370 at 500.896 kb on - strand, within EX31_RS19370 at 500.953 kb on + strand at 500.977 kb on + strand at 500.977 kb on + strand at 500.977 kb on + strand at 500.978 kb on - strand at 500.978 kb on - strand at 500.978 kb on - strand at 500.980 kb on + strand at 500.981 kb on - strand at 500.981 kb on - strand at 500.981 kb on - strand at 500.981 kb on - strand at 500.981 kb on - strand at 500.981 kb on - strand at 501.002 kb on + strand at 501.002 kb on + strand at 501.002 kb on + strand at 501.003 kb on - strand at 501.053 kb on - strand at 501.066 kb on + strand at 501.066 kb on + strand at 501.066 kb on + strand at 501.066 kb on + strand at 501.066 kb on + strand at 501.066 kb on + strand at 501.066 kb on + strand at 501.067 kb on - strand at 501.070 kb on + strand at 501.070 kb on + strand at 501.070 kb on + strand at 501.070 kb on + strand at 501.071 kb on - strand at 501.072 kb on + strand at 501.072 kb on + strand at 501.072 kb on + strand at 501.072 kb on + strand at 501.072 kb on + strand at 501.073 kb on - strand at 501.073 kb on - strand at 501.073 kb on - strand at 501.073 kb on - strand at 501.073 kb on - strand at 501.104 kb on + strand at 501.105 kb on - strand at 501.105 kb on - strand at 501.105 kb on - strand at 501.147 kb on + strand at 501.147 kb on + strand at 501.147 kb on + strand at 501.147 kb on + strand at 501.148 kb on - strand at 501.148 kb on - strand at 501.148 kb on - strand at 501.148 kb on - strand at 501.148 kb on - strand at 501.211 kb on - strand at 501.318 kb on - strand, within EX31_RS19375
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 499,049 + EX31_RS19360 0.44 -1.1 499,050 - EX31_RS19360 0.44 +0.6 499,050 - EX31_RS19360 0.44 +0.1 499,110 + EX31_RS19360 0.49 -0.5 499,124 - EX31_RS19360 0.50 +0.6 499,247 + EX31_RS19360 0.59 -0.4 499,247 + EX31_RS19360 0.59 +0.4 499,247 + EX31_RS19360 0.59 -0.7 499,248 - EX31_RS19360 0.59 -0.3 499,277 + EX31_RS19360 0.61 +0.5 499,295 + EX31_RS19360 0.63 -0.0 499,295 + EX31_RS19360 0.63 +1.7 499,295 + EX31_RS19360 0.63 -1.0 499,349 + EX31_RS19360 0.67 -0.8 499,349 + EX31_RS19360 0.67 +0.7 499,350 - EX31_RS19360 0.67 +0.1 499,400 - EX31_RS19360 0.71 +0.4 499,414 - EX31_RS19360 0.72 -2.8 499,414 - EX31_RS19360 0.72 -0.5 499,469 + EX31_RS19360 0.76 -0.1 499,469 + EX31_RS19360 0.76 +2.0 499,469 + EX31_RS19360 0.76 +0.6 499,469 + EX31_RS19360 0.76 -2.4 499,470 - EX31_RS19360 0.76 +0.4 499,513 + EX31_RS19360 0.79 +0.6 499,582 - EX31_RS19360 0.84 +0.7 499,632 + EX31_RS19360 0.88 +0.4 499,705 - +1.0 499,757 - +0.5 499,781 + -0.7 499,819 + -1.2 499,819 + +1.2 499,819 + +1.2 499,869 + +0.3 499,870 - +0.2 499,880 + +0.9 499,905 + +0.4 499,938 - -0.2 499,941 + -1.6 499,941 + -1.2 499,941 + +0.7 499,941 + -1.4 499,941 + +1.0 499,942 - -0.1 499,942 - +0.8 499,951 + -2.6 499,951 + +2.0 499,951 + +0.5 499,951 + +0.6 499,951 + -0.4 499,952 - -0.9 499,953 + +1.1 499,953 + +1.0 499,953 + -0.2 499,953 + +0.5 499,953 + +1.6 499,954 - -2.1 499,971 + +0.6 499,971 + +0.3 500,062 - EX31_RS19365 0.11 +0.7 500,107 + EX31_RS19365 0.26 +0.4 500,108 - EX31_RS19365 0.26 +0.4 500,108 - EX31_RS19365 0.26 -1.4 500,108 - EX31_RS19365 0.26 +0.5 500,108 - EX31_RS19365 0.26 -1.6 500,172 - EX31_RS19365 0.47 -1.8 500,225 - EX31_RS19365 0.64 -0.8 500,225 - EX31_RS19365 0.64 +0.0 500,290 - EX31_RS19365 0.85 -1.1 500,290 - EX31_RS19365 0.85 -0.1 500,290 - EX31_RS19365 0.85 -0.1 500,348 + +0.0 500,372 - +0.1 500,372 - +0.6 500,372 - -0.8 500,393 + -1.1 500,393 + -0.6 500,393 + -0.4 500,393 + -0.5 500,393 + +0.9 500,394 - -1.1 500,394 - +0.4 500,394 - -1.4 500,394 - +0.8 500,394 - +0.5 500,394 - +1.3 500,394 - -1.8 500,405 - -0.2 500,405 - +2.3 500,427 - +0.3 500,427 - +0.5 500,588 - EX31_RS19370 0.27 -0.1 500,640 + EX31_RS19370 0.37 -0.3 500,653 + EX31_RS19370 0.40 +0.6 500,685 + EX31_RS19370 0.46 -2.0 500,685 + EX31_RS19370 0.46 -0.4 500,685 + EX31_RS19370 0.46 +0.2 500,686 - EX31_RS19370 0.46 -0.2 500,782 + EX31_RS19370 0.65 -0.6 500,783 - EX31_RS19370 0.65 -0.2 500,783 - EX31_RS19370 0.65 -0.4 500,850 - EX31_RS19370 0.78 -0.4 500,881 + EX31_RS19370 0.84 +0.5 500,895 + EX31_RS19370 0.86 -1.4 500,896 - EX31_RS19370 0.87 +0.1 500,953 + -1.0 500,977 + +0.7 500,977 + +0.3 500,977 + -0.4 500,978 - -0.1 500,978 - -0.1 500,978 - -2.5 500,980 + +0.4 500,981 - -0.6 500,981 - +0.9 500,981 - +0.4 500,981 - -0.1 500,981 - +0.7 500,981 - +0.3 501,002 + -0.0 501,002 + -0.6 501,002 + +0.7 501,003 - -0.8 501,053 - -0.6 501,066 + +0.3 501,066 + +0.9 501,066 + +0.5 501,066 + -0.2 501,066 + -2.5 501,066 + -0.8 501,066 + +0.2 501,067 - +1.0 501,070 + -0.2 501,070 + +0.2 501,070 + +1.6 501,070 + +0.6 501,071 - -1.5 501,072 + +0.8 501,072 + -0.7 501,072 + +0.4 501,072 + +0.8 501,072 + +0.6 501,073 - -3.0 501,073 - -3.1 501,073 - -0.3 501,073 - -2.2 501,073 - +0.2 501,104 + +0.0 501,105 - +2.6 501,105 - -0.6 501,105 - -0.2 501,147 + -0.8 501,147 + -0.5 501,147 + -2.8 501,147 + +0.8 501,148 - +0.1 501,148 - +0.3 501,148 - +0.8 501,148 - -1.0 501,148 - +0.1 501,211 - -0.4 501,318 - EX31_RS19375 0.11 +0.2
Or see this region's nucleotide sequence