Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS14315 and EX31_RS14320 are separated by 152 nucleotides EX31_RS14320 and EX31_RS14325 overlap by 4 nucleotides
EX31_RS14315: EX31_RS14315 - periplasmic heavy metal sensor, at 45,224 to 45,733
_RS14315
EX31_RS14320: EX31_RS14320 - envelope stress response regulator transcription factor CpxR, at 45,886 to 46,587
_RS14320
EX31_RS14325: EX31_RS14325 - envelope stress sensor histidine kinase CpxA, at 46,584 to 47,954
_RS14325
Position (kb) 45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 44.895 kb on + strand at 44.896 kb on - strand at 44.896 kb on - strand at 44.896 kb on - strand at 44.910 kb on - strand at 44.910 kb on - strand at 44.963 kb on + strand at 44.964 kb on - strand at 44.964 kb on - strand at 44.980 kb on - strand at 44.980 kb on - strand at 44.980 kb on - strand at 44.981 kb on + strand at 44.981 kb on + strand at 44.981 kb on + strand at 44.982 kb on - strand at 44.982 kb on - strand at 44.982 kb on - strand at 44.982 kb on - strand at 44.982 kb on - strand at 44.982 kb on - strand at 44.982 kb on - strand at 44.982 kb on - strand at 44.982 kb on - strand at 44.982 kb on - strand at 44.982 kb on - strand at 44.982 kb on - strand at 44.982 kb on - strand at 44.982 kb on - strand at 44.982 kb on - strand at 44.982 kb on - strand at 44.984 kb on + strand at 44.984 kb on + strand at 44.984 kb on + strand at 44.984 kb on + strand at 44.984 kb on + strand at 44.984 kb on + strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.985 kb on - strand at 44.986 kb on + strand at 44.986 kb on + strand at 44.986 kb on + strand at 44.986 kb on + strand at 44.986 kb on + strand at 44.986 kb on + strand at 44.987 kb on - strand at 44.987 kb on - strand at 44.987 kb on - strand at 45.027 kb on + strand at 45.027 kb on + strand at 45.028 kb on - strand at 45.028 kb on - strand at 45.028 kb on - strand at 45.033 kb on + strand at 45.033 kb on + strand at 45.033 kb on + strand at 45.033 kb on + strand at 45.033 kb on + strand at 45.033 kb on + strand at 45.033 kb on + strand at 45.034 kb on - strand at 45.034 kb on - strand at 45.034 kb on - strand at 45.034 kb on - strand at 45.034 kb on - strand at 45.034 kb on - strand at 45.034 kb on - strand at 45.046 kb on - strand at 45.046 kb on - strand at 45.068 kb on - strand at 45.077 kb on - strand at 45.083 kb on + strand at 45.083 kb on + strand at 45.201 kb on + strand at 45.202 kb on - strand at 45.226 kb on - strand at 45.226 kb on - strand at 45.241 kb on + strand at 45.241 kb on + strand at 45.242 kb on - strand at 45.242 kb on - strand at 45.244 kb on + strand at 45.244 kb on + strand at 45.244 kb on + strand at 45.244 kb on + strand at 45.245 kb on - strand at 45.245 kb on - strand at 45.245 kb on - strand at 45.245 kb on - strand at 45.245 kb on - strand at 45.281 kb on + strand, within EX31_RS14315 at 45.282 kb on - strand, within EX31_RS14315 at 45.329 kb on + strand, within EX31_RS14315 at 45.330 kb on - strand, within EX31_RS14315 at 45.330 kb on - strand, within EX31_RS14315 at 45.330 kb on - strand, within EX31_RS14315 at 45.330 kb on - strand, within EX31_RS14315 at 45.330 kb on - strand, within EX31_RS14315 at 45.330 kb on - strand, within EX31_RS14315 at 45.330 kb on - strand, within EX31_RS14315 at 45.330 kb on - strand, within EX31_RS14315 at 45.330 kb on - strand, within EX31_RS14315 at 45.330 kb on - strand, within EX31_RS14315 at 45.330 kb on - strand, within EX31_RS14315 at 45.358 kb on + strand, within EX31_RS14315 at 45.359 kb on - strand, within EX31_RS14315 at 45.359 kb on - strand, within EX31_RS14315 at 45.359 kb on - strand, within EX31_RS14315 at 45.419 kb on + strand, within EX31_RS14315 at 45.419 kb on + strand, within EX31_RS14315 at 45.420 kb on - strand, within EX31_RS14315 at 45.420 kb on - strand, within EX31_RS14315 at 45.420 kb on - strand, within EX31_RS14315 at 45.420 kb on - strand, within EX31_RS14315 at 45.420 kb on - strand, within EX31_RS14315 at 45.489 kb on - strand, within EX31_RS14315 at 45.489 kb on - strand, within EX31_RS14315 at 45.489 kb on - strand, within EX31_RS14315 at 45.489 kb on - strand, within EX31_RS14315 at 45.489 kb on - strand, within EX31_RS14315 at 45.498 kb on - strand, within EX31_RS14315 at 45.498 kb on - strand, within EX31_RS14315 at 45.498 kb on - strand, within EX31_RS14315 at 45.498 kb on - strand, within EX31_RS14315 at 45.503 kb on + strand, within EX31_RS14315 at 45.503 kb on + strand, within EX31_RS14315 at 45.503 kb on + strand, within EX31_RS14315 at 45.503 kb on + strand, within EX31_RS14315 at 45.504 kb on - strand, within EX31_RS14315 at 45.504 kb on - strand, within EX31_RS14315 at 45.504 kb on - strand, within EX31_RS14315 at 45.504 kb on - strand, within EX31_RS14315 at 45.504 kb on - strand, within EX31_RS14315 at 45.504 kb on - strand, within EX31_RS14315 at 45.504 kb on - strand, within EX31_RS14315 at 45.504 kb on - strand, within EX31_RS14315 at 45.504 kb on - strand, within EX31_RS14315 at 45.504 kb on - strand, within EX31_RS14315 at 45.513 kb on - strand, within EX31_RS14315 at 45.520 kb on + strand, within EX31_RS14315 at 45.568 kb on + strand, within EX31_RS14315 at 45.569 kb on - strand, within EX31_RS14315 at 45.576 kb on - strand, within EX31_RS14315 at 45.576 kb on - strand, within EX31_RS14315 at 45.625 kb on + strand, within EX31_RS14315 at 45.625 kb on + strand, within EX31_RS14315 at 45.626 kb on - strand, within EX31_RS14315 at 45.626 kb on - strand, within EX31_RS14315 at 45.626 kb on - strand, within EX31_RS14315 at 45.626 kb on - strand, within EX31_RS14315 at 45.626 kb on - strand, within EX31_RS14315 at 45.727 kb on + strand at 45.727 kb on + strand at 45.738 kb on + strand at 45.738 kb on + strand at 45.738 kb on + strand at 45.738 kb on + strand at 45.738 kb on + strand at 45.738 kb on + strand at 45.738 kb on + strand at 45.738 kb on + strand at 45.738 kb on + strand at 45.738 kb on + strand at 45.739 kb on - strand at 45.739 kb on - strand at 45.739 kb on - strand at 45.739 kb on - strand at 45.739 kb on - strand at 45.739 kb on - strand at 45.739 kb on - strand at 45.739 kb on - strand at 45.745 kb on - strand at 45.754 kb on - strand at 45.786 kb on + strand at 45.820 kb on + strand at 45.820 kb on + strand at 45.820 kb on + strand at 45.820 kb on + strand at 45.821 kb on - strand at 45.830 kb on + strand at 45.830 kb on + strand at 45.830 kb on + strand at 45.830 kb on + strand at 45.831 kb on - strand at 45.831 kb on - strand at 45.831 kb on - strand at 45.861 kb on + strand at 45.861 kb on + strand at 45.861 kb on + strand at 45.862 kb on - strand at 45.872 kb on + strand at 45.878 kb on + strand at 45.878 kb on + strand at 45.882 kb on + strand at 45.882 kb on + strand at 45.882 kb on + strand at 45.883 kb on - strand at 45.902 kb on + strand at 45.902 kb on + strand at 45.998 kb on + strand, within EX31_RS14320 at 46.011 kb on + strand, within EX31_RS14320 at 46.110 kb on + strand, within EX31_RS14320 at 46.110 kb on + strand, within EX31_RS14320 at 46.136 kb on + strand, within EX31_RS14320 at 46.192 kb on - strand, within EX31_RS14320 at 46.304 kb on + strand, within EX31_RS14320 at 46.476 kb on + strand, within EX31_RS14320 at 46.588 kb on + strand at 46.589 kb on - strand at 46.599 kb on - strand at 46.607 kb on + strand at 46.607 kb on + strand at 46.607 kb on + strand at 46.607 kb on + strand at 46.608 kb on - strand at 46.640 kb on - strand at 46.640 kb on - strand at 46.654 kb on + strand at 46.654 kb on + strand at 46.655 kb on - strand at 46.655 kb on - strand at 46.655 kb on - strand at 46.658 kb on - strand at 46.688 kb on + strand at 46.897 kb on + strand, within EX31_RS14325 at 46.897 kb on + strand, within EX31_RS14325 at 46.897 kb on + strand, within EX31_RS14325 at 46.897 kb on + strand, within EX31_RS14325 at 46.898 kb on - strand, within EX31_RS14325 at 46.898 kb on - strand, within EX31_RS14325 at 46.898 kb on - strand, within EX31_RS14325 at 46.898 kb on - strand, within EX31_RS14325 at 46.898 kb on - strand, within EX31_RS14325 at 46.898 kb on - strand, within EX31_RS14325 at 46.901 kb on + strand, within EX31_RS14325 at 46.901 kb on + strand, within EX31_RS14325 at 46.901 kb on + strand, within EX31_RS14325 at 47.004 kb on + strand, within EX31_RS14325 at 47.005 kb on - strand, within EX31_RS14325 at 47.005 kb on - strand, within EX31_RS14325 at 47.157 kb on - strand, within EX31_RS14325 at 47.157 kb on - strand, within EX31_RS14325 at 47.157 kb on - strand, within EX31_RS14325 at 47.157 kb on - strand, within EX31_RS14325 at 47.290 kb on + strand, within EX31_RS14325 at 47.290 kb on + strand, within EX31_RS14325 at 47.291 kb on - strand, within EX31_RS14325 at 47.291 kb on - strand, within EX31_RS14325 at 47.291 kb on - strand, within EX31_RS14325 at 47.332 kb on + strand, within EX31_RS14325 at 47.332 kb on + strand, within EX31_RS14325 at 47.332 kb on + strand, within EX31_RS14325 at 47.332 kb on + strand, within EX31_RS14325 at 47.332 kb on + strand, within EX31_RS14325 at 47.332 kb on + strand, within EX31_RS14325 at 47.332 kb on + strand, within EX31_RS14325 at 47.332 kb on + strand, within EX31_RS14325 at 47.332 kb on + strand, within EX31_RS14325 at 47.332 kb on + strand, within EX31_RS14325 at 47.332 kb on + strand, within EX31_RS14325 at 47.333 kb on - strand, within EX31_RS14325 at 47.333 kb on - strand, within EX31_RS14325 at 47.333 kb on - strand, within EX31_RS14325 at 47.333 kb on - strand, within EX31_RS14325 at 47.333 kb on - strand, within EX31_RS14325 at 47.333 kb on - strand, within EX31_RS14325 at 47.333 kb on - strand, within EX31_RS14325 at 47.333 kb on - strand, within EX31_RS14325 at 47.333 kb on - strand, within EX31_RS14325 at 47.333 kb on - strand, within EX31_RS14325 at 47.333 kb on - strand, within EX31_RS14325 at 47.337 kb on - strand, within EX31_RS14325 at 47.337 kb on - strand, within EX31_RS14325 at 47.464 kb on + strand, within EX31_RS14325 at 47.481 kb on - strand, within EX31_RS14325 at 47.481 kb on - strand, within EX31_RS14325 at 47.481 kb on - strand, within EX31_RS14325 at 47.492 kb on - strand, within EX31_RS14325 at 47.492 kb on - strand, within EX31_RS14325
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 44,895 + -0.9 44,896 - +2.1 44,896 - +0.7 44,896 - -1.4 44,910 - +0.4 44,910 - +0.7 44,963 + +0.3 44,964 - +0.4 44,964 - -0.9 44,980 - -0.4 44,980 - +0.6 44,980 - -2.2 44,981 + +0.1 44,981 + -0.8 44,981 + +2.5 44,982 - -0.1 44,982 - -0.7 44,982 - +0.3 44,982 - -1.0 44,982 - -0.2 44,982 - -0.3 44,982 - +0.6 44,982 - -0.2 44,982 - -1.8 44,982 - -0.0 44,982 - +0.4 44,982 - +0.3 44,982 - +1.1 44,982 - -0.5 44,982 - +0.9 44,982 - +0.6 44,984 + +1.7 44,984 + +1.7 44,984 + -0.8 44,984 + +1.3 44,984 + +1.8 44,984 + +1.4 44,985 - -0.7 44,985 - +0.1 44,985 - +0.0 44,985 - -0.1 44,985 - -0.1 44,985 - -0.2 44,985 - +0.4 44,985 - +0.4 44,985 - -0.1 44,985 - +0.0 44,985 - -0.2 44,985 - -2.0 44,985 - +0.5 44,985 - +0.1 44,985 - +1.0 44,985 - +0.4 44,985 - +0.9 44,985 - -1.0 44,985 - -0.5 44,985 - +1.4 44,985 - -0.2 44,985 - +0.2 44,985 - +0.5 44,986 + +0.5 44,986 + -1.9 44,986 + +0.5 44,986 + -0.5 44,986 + -1.5 44,986 + +0.1 44,987 - +0.3 44,987 - -1.6 44,987 - -0.4 45,027 + +0.1 45,027 + -0.6 45,028 - -1.5 45,028 - -0.3 45,028 - +0.1 45,033 + -0.3 45,033 + -0.0 45,033 + -0.3 45,033 + +0.3 45,033 + +1.0 45,033 + -2.6 45,033 + +0.0 45,034 - -0.5 45,034 - +0.3 45,034 - -0.3 45,034 - +0.5 45,034 - +0.5 45,034 - -0.1 45,034 - -0.5 45,046 - -0.1 45,046 - +0.1 45,068 - -0.3 45,077 - -1.1 45,083 + +0.5 45,083 + +0.1 45,201 + -0.1 45,202 - +0.3 45,226 - +0.2 45,226 - +0.8 45,241 + +0.3 45,241 + +0.0 45,242 - +0.8 45,242 - -0.2 45,244 + -0.3 45,244 + -0.4 45,244 + +0.2 45,244 + -0.6 45,245 - +0.2 45,245 - +0.0 45,245 - +0.6 45,245 - -0.0 45,245 - +0.5 45,281 + EX31_RS14315 0.11 +0.7 45,282 - EX31_RS14315 0.11 -0.3 45,329 + EX31_RS14315 0.21 -0.2 45,330 - EX31_RS14315 0.21 -0.3 45,330 - EX31_RS14315 0.21 -0.3 45,330 - EX31_RS14315 0.21 +0.5 45,330 - EX31_RS14315 0.21 -0.2 45,330 - EX31_RS14315 0.21 -0.9 45,330 - EX31_RS14315 0.21 +0.4 45,330 - EX31_RS14315 0.21 -0.2 45,330 - EX31_RS14315 0.21 +1.0 45,330 - EX31_RS14315 0.21 -0.4 45,330 - EX31_RS14315 0.21 -0.8 45,330 - EX31_RS14315 0.21 +0.4 45,358 + EX31_RS14315 0.26 +0.7 45,359 - EX31_RS14315 0.26 -0.2 45,359 - EX31_RS14315 0.26 -0.3 45,359 - EX31_RS14315 0.26 +0.3 45,419 + EX31_RS14315 0.38 -0.4 45,419 + EX31_RS14315 0.38 -0.6 45,420 - EX31_RS14315 0.38 -0.9 45,420 - EX31_RS14315 0.38 -0.2 45,420 - EX31_RS14315 0.38 -0.7 45,420 - EX31_RS14315 0.38 -0.3 45,420 - EX31_RS14315 0.38 +0.3 45,489 - EX31_RS14315 0.52 +0.8 45,489 - EX31_RS14315 0.52 +0.7 45,489 - EX31_RS14315 0.52 -0.1 45,489 - EX31_RS14315 0.52 +0.4 45,489 - EX31_RS14315 0.52 -0.4 45,498 - EX31_RS14315 0.54 -0.3 45,498 - EX31_RS14315 0.54 -0.1 45,498 - EX31_RS14315 0.54 -0.8 45,498 - EX31_RS14315 0.54 +0.3 45,503 + EX31_RS14315 0.55 -0.4 45,503 + EX31_RS14315 0.55 +0.4 45,503 + EX31_RS14315 0.55 +0.7 45,503 + EX31_RS14315 0.55 -1.2 45,504 - EX31_RS14315 0.55 +0.0 45,504 - EX31_RS14315 0.55 -0.8 45,504 - EX31_RS14315 0.55 +0.2 45,504 - EX31_RS14315 0.55 +0.4 45,504 - EX31_RS14315 0.55 +0.4 45,504 - EX31_RS14315 0.55 -1.7 45,504 - EX31_RS14315 0.55 +0.2 45,504 - EX31_RS14315 0.55 +1.4 45,504 - EX31_RS14315 0.55 +0.3 45,504 - EX31_RS14315 0.55 +1.2 45,513 - EX31_RS14315 0.57 -0.0 45,520 + EX31_RS14315 0.58 +0.3 45,568 + EX31_RS14315 0.67 +0.5 45,569 - EX31_RS14315 0.68 -0.2 45,576 - EX31_RS14315 0.69 -0.2 45,576 - EX31_RS14315 0.69 -0.2 45,625 + EX31_RS14315 0.79 +0.3 45,625 + EX31_RS14315 0.79 +0.0 45,626 - EX31_RS14315 0.79 +0.0 45,626 - EX31_RS14315 0.79 -0.8 45,626 - EX31_RS14315 0.79 -0.4 45,626 - EX31_RS14315 0.79 +0.3 45,626 - EX31_RS14315 0.79 +0.2 45,727 + -1.2 45,727 + +0.3 45,738 + +0.6 45,738 + +0.1 45,738 + -0.1 45,738 + +0.1 45,738 + -0.5 45,738 + +0.1 45,738 + -0.1 45,738 + -0.1 45,738 + +0.1 45,738 + +0.7 45,739 - -0.1 45,739 - +0.2 45,739 - +0.1 45,739 - -0.2 45,739 - +0.5 45,739 - +0.3 45,739 - +0.5 45,739 - -0.2 45,745 - -0.6 45,754 - -1.1 45,786 + -0.5 45,820 + +1.0 45,820 + -0.5 45,820 + +0.1 45,820 + +0.9 45,821 - -0.2 45,830 + -0.2 45,830 + -2.1 45,830 + -0.2 45,830 + -0.3 45,831 - +0.6 45,831 - -1.5 45,831 - +0.6 45,861 + +0.2 45,861 + +0.3 45,861 + -0.3 45,862 - +0.8 45,872 + -0.4 45,878 + +0.7 45,878 + -0.6 45,882 + +0.4 45,882 + +1.0 45,882 + +1.3 45,883 - -2.5 45,902 + +1.5 45,902 + +0.0 45,998 + EX31_RS14320 0.16 -1.9 46,011 + EX31_RS14320 0.18 -0.5 46,110 + EX31_RS14320 0.32 +1.0 46,110 + EX31_RS14320 0.32 -0.4 46,136 + EX31_RS14320 0.36 -2.9 46,192 - EX31_RS14320 0.44 +0.1 46,304 + EX31_RS14320 0.60 -2.2 46,476 + EX31_RS14320 0.84 -1.1 46,588 + -0.8 46,589 - -1.4 46,599 - +0.0 46,607 + -0.7 46,607 + -0.3 46,607 + -0.7 46,607 + -0.9 46,608 - -0.8 46,640 - -0.7 46,640 - +0.0 46,654 + +0.0 46,654 + -1.0 46,655 - -1.4 46,655 - -1.2 46,655 - -0.6 46,658 - -1.3 46,688 + -1.0 46,897 + EX31_RS14325 0.23 +1.1 46,897 + EX31_RS14325 0.23 -0.3 46,897 + EX31_RS14325 0.23 -0.8 46,897 + EX31_RS14325 0.23 -0.5 46,898 - EX31_RS14325 0.23 -0.4 46,898 - EX31_RS14325 0.23 -1.9 46,898 - EX31_RS14325 0.23 -0.4 46,898 - EX31_RS14325 0.23 +0.3 46,898 - EX31_RS14325 0.23 -0.5 46,898 - EX31_RS14325 0.23 -0.0 46,901 + EX31_RS14325 0.23 -1.0 46,901 + EX31_RS14325 0.23 +0.1 46,901 + EX31_RS14325 0.23 +0.2 47,004 + EX31_RS14325 0.31 -0.2 47,005 - EX31_RS14325 0.31 -0.0 47,005 - EX31_RS14325 0.31 -0.5 47,157 - EX31_RS14325 0.42 +0.6 47,157 - EX31_RS14325 0.42 -1.2 47,157 - EX31_RS14325 0.42 +0.6 47,157 - EX31_RS14325 0.42 +0.1 47,290 + EX31_RS14325 0.51 -1.2 47,290 + EX31_RS14325 0.51 -1.6 47,291 - EX31_RS14325 0.52 -0.6 47,291 - EX31_RS14325 0.52 +0.9 47,291 - EX31_RS14325 0.52 +0.2 47,332 + EX31_RS14325 0.55 -0.7 47,332 + EX31_RS14325 0.55 -0.2 47,332 + EX31_RS14325 0.55 +1.0 47,332 + EX31_RS14325 0.55 -1.6 47,332 + EX31_RS14325 0.55 -0.3 47,332 + EX31_RS14325 0.55 +0.6 47,332 + EX31_RS14325 0.55 -0.7 47,332 + EX31_RS14325 0.55 -1.4 47,332 + EX31_RS14325 0.55 +1.3 47,332 + EX31_RS14325 0.55 +0.1 47,332 + EX31_RS14325 0.55 +0.4 47,333 - EX31_RS14325 0.55 +0.2 47,333 - EX31_RS14325 0.55 -0.1 47,333 - EX31_RS14325 0.55 -0.1 47,333 - EX31_RS14325 0.55 -0.3 47,333 - EX31_RS14325 0.55 -1.3 47,333 - EX31_RS14325 0.55 -1.2 47,333 - EX31_RS14325 0.55 -0.1 47,333 - EX31_RS14325 0.55 +0.5 47,333 - EX31_RS14325 0.55 -0.7 47,333 - EX31_RS14325 0.55 +0.2 47,333 - EX31_RS14325 0.55 -1.3 47,337 - EX31_RS14325 0.55 -0.4 47,337 - EX31_RS14325 0.55 -1.6 47,464 + EX31_RS14325 0.64 +0.4 47,481 - EX31_RS14325 0.65 -0.3 47,481 - EX31_RS14325 0.65 -1.6 47,481 - EX31_RS14325 0.65 -0.3 47,492 - EX31_RS14325 0.66 -0.3 47,492 - EX31_RS14325 0.66 -0.1
Or see this region's nucleotide sequence