Strain Fitness in Rahnella sp. WP5 around EX31_RS12380

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12375 and EX31_RS12380 are separated by 25 nucleotidesEX31_RS12380 and EX31_RS12385 overlap by 4 nucleotidesEX31_RS12385 and EX31_RS12390 are separated by 67 nucleotides EX31_RS12375: EX31_RS12375 - PRD domain-containing protein, at 144,337 to 146,253 _RS12375 EX31_RS12380: EX31_RS12380 - PTS phosphocarrier protein NPr, at 146,279 to 146,551 _RS12380 EX31_RS12385: EX31_RS12385 - RNase adapter RapZ, at 146,548 to 147,402 _RS12385 EX31_RS12390: EX31_RS12390 - PTS IIA-like nitrogen regulatory protein PtsN, at 147,470 to 147,940 _RS12390 Position (kb) 146 147Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 145.285 kb on - strand, within EX31_RS12375at 145.285 kb on - strand, within EX31_RS12375at 145.350 kb on + strand, within EX31_RS12375at 145.350 kb on + strand, within EX31_RS12375at 145.351 kb on - strand, within EX31_RS12375at 145.351 kb on - strand, within EX31_RS12375at 145.354 kb on - strand, within EX31_RS12375at 145.374 kb on + strand, within EX31_RS12375at 145.375 kb on - strand, within EX31_RS12375at 145.402 kb on + strand, within EX31_RS12375at 145.403 kb on - strand, within EX31_RS12375at 145.403 kb on - strand, within EX31_RS12375at 145.410 kb on + strand, within EX31_RS12375at 145.441 kb on + strand, within EX31_RS12375at 145.441 kb on + strand, within EX31_RS12375at 145.450 kb on + strand, within EX31_RS12375at 145.450 kb on + strand, within EX31_RS12375at 145.451 kb on - strand, within EX31_RS12375at 145.452 kb on + strand, within EX31_RS12375at 145.452 kb on + strand, within EX31_RS12375at 145.452 kb on + strand, within EX31_RS12375at 145.453 kb on - strand, within EX31_RS12375at 145.453 kb on - strand, within EX31_RS12375at 145.453 kb on - strand, within EX31_RS12375at 145.453 kb on - strand, within EX31_RS12375at 145.516 kb on + strand, within EX31_RS12375at 145.516 kb on + strand, within EX31_RS12375at 145.516 kb on + strand, within EX31_RS12375at 145.517 kb on - strand, within EX31_RS12375at 145.517 kb on - strand, within EX31_RS12375at 145.517 kb on - strand, within EX31_RS12375at 145.556 kb on + strand, within EX31_RS12375at 145.557 kb on - strand, within EX31_RS12375at 145.584 kb on + strand, within EX31_RS12375at 145.584 kb on + strand, within EX31_RS12375at 145.585 kb on - strand, within EX31_RS12375at 145.654 kb on + strand, within EX31_RS12375at 145.654 kb on + strand, within EX31_RS12375at 145.654 kb on + strand, within EX31_RS12375at 145.720 kb on - strand, within EX31_RS12375at 145.784 kb on + strand, within EX31_RS12375at 145.807 kb on + strand, within EX31_RS12375at 145.807 kb on + strand, within EX31_RS12375at 145.807 kb on + strand, within EX31_RS12375at 145.807 kb on + strand, within EX31_RS12375at 145.807 kb on + strand, within EX31_RS12375at 145.807 kb on + strand, within EX31_RS12375at 145.807 kb on + strand, within EX31_RS12375at 145.807 kb on + strand, within EX31_RS12375at 145.808 kb on - strand, within EX31_RS12375at 145.808 kb on - strand, within EX31_RS12375at 145.808 kb on - strand, within EX31_RS12375at 145.809 kb on + strand, within EX31_RS12375at 145.809 kb on + strand, within EX31_RS12375at 145.809 kb on + strand, within EX31_RS12375at 145.809 kb on + strand, within EX31_RS12375at 145.809 kb on + strand, within EX31_RS12375at 145.809 kb on + strand, within EX31_RS12375at 145.809 kb on + strand, within EX31_RS12375at 145.809 kb on + strand, within EX31_RS12375at 145.809 kb on + strand, within EX31_RS12375at 145.809 kb on + strand, within EX31_RS12375at 145.809 kb on + strand, within EX31_RS12375at 145.810 kb on - strand, within EX31_RS12375at 145.810 kb on - strand, within EX31_RS12375at 145.810 kb on - strand, within EX31_RS12375at 145.810 kb on - strand, within EX31_RS12375at 145.810 kb on - strand, within EX31_RS12375at 145.810 kb on - strand, within EX31_RS12375at 145.877 kb on + strand, within EX31_RS12375at 145.877 kb on + strand, within EX31_RS12375at 145.877 kb on + strand, within EX31_RS12375at 145.877 kb on + strand, within EX31_RS12375at 145.878 kb on - strand, within EX31_RS12375at 145.878 kb on - strand, within EX31_RS12375at 145.916 kb on - strand, within EX31_RS12375at 145.916 kb on - strand, within EX31_RS12375at 145.916 kb on - strand, within EX31_RS12375at 146.036 kb on + strand, within EX31_RS12375at 146.123 kb on - strandat 146.144 kb on - strandat 146.251 kb on + strandat 146.251 kb on + strandat 146.252 kb on - strandat 146.252 kb on - strandat 146.252 kb on - strandat 146.273 kb on + strandat 146.273 kb on + strandat 146.273 kb on + strandat 146.274 kb on - strandat 146.274 kb on - strandat 146.274 kb on - strandat 146.277 kb on + strandat 146.277 kb on + strandat 146.277 kb on + strandat 146.302 kb on + strandat 146.302 kb on + strandat 146.312 kb on + strand, within EX31_RS12380at 146.313 kb on - strand, within EX31_RS12380at 146.313 kb on - strand, within EX31_RS12380at 146.313 kb on - strand, within EX31_RS12380at 146.509 kb on + strand, within EX31_RS12380at 146.510 kb on - strand, within EX31_RS12380at 146.531 kb on + strandat 146.532 kb on - strandat 146.613 kb on - strandat 146.635 kb on - strand, within EX31_RS12385at 146.636 kb on + strand, within EX31_RS12385at 146.636 kb on + strand, within EX31_RS12385at 146.636 kb on + strand, within EX31_RS12385at 146.636 kb on + strand, within EX31_RS12385at 146.637 kb on - strand, within EX31_RS12385at 146.637 kb on - strand, within EX31_RS12385at 146.637 kb on - strand, within EX31_RS12385at 146.637 kb on - strand, within EX31_RS12385at 146.637 kb on - strand, within EX31_RS12385at 146.637 kb on - strand, within EX31_RS12385at 146.637 kb on - strand, within EX31_RS12385at 146.684 kb on + strand, within EX31_RS12385at 146.684 kb on + strand, within EX31_RS12385at 146.684 kb on + strand, within EX31_RS12385at 146.684 kb on + strand, within EX31_RS12385at 146.685 kb on - strand, within EX31_RS12385at 146.685 kb on - strand, within EX31_RS12385at 146.685 kb on - strand, within EX31_RS12385at 146.685 kb on - strand, within EX31_RS12385at 146.729 kb on + strand, within EX31_RS12385at 146.729 kb on + strand, within EX31_RS12385at 146.745 kb on - strand, within EX31_RS12385at 146.748 kb on + strand, within EX31_RS12385at 146.748 kb on + strand, within EX31_RS12385at 146.749 kb on - strand, within EX31_RS12385at 146.767 kb on - strand, within EX31_RS12385at 146.796 kb on + strand, within EX31_RS12385at 146.797 kb on - strand, within EX31_RS12385at 147.132 kb on + strand, within EX31_RS12385at 147.132 kb on + strand, within EX31_RS12385at 147.132 kb on + strand, within EX31_RS12385at 147.133 kb on - strand, within EX31_RS12385at 147.155 kb on - strand, within EX31_RS12385at 147.155 kb on - strand, within EX31_RS12385at 147.155 kb on - strand, within EX31_RS12385at 147.155 kb on - strand, within EX31_RS12385at 147.155 kb on - strand, within EX31_RS12385at 147.198 kb on - strand, within EX31_RS12385at 147.198 kb on - strand, within EX31_RS12385at 147.198 kb on - strand, within EX31_RS12385at 147.198 kb on - strand, within EX31_RS12385at 147.204 kb on - strand, within EX31_RS12385at 147.204 kb on - strand, within EX31_RS12385at 147.229 kb on - strand, within EX31_RS12385at 147.229 kb on - strand, within EX31_RS12385at 147.229 kb on - strand, within EX31_RS12385at 147.258 kb on + strand, within EX31_RS12385at 147.258 kb on + strand, within EX31_RS12385at 147.258 kb on + strand, within EX31_RS12385at 147.259 kb on - strand, within EX31_RS12385at 147.259 kb on - strand, within EX31_RS12385at 147.259 kb on - strand, within EX31_RS12385at 147.259 kb on - strand, within EX31_RS12385at 147.259 kb on - strand, within EX31_RS12385at 147.259 kb on - strand, within EX31_RS12385at 147.261 kb on + strand, within EX31_RS12385at 147.261 kb on + strand, within EX31_RS12385at 147.262 kb on - strand, within EX31_RS12385at 147.262 kb on - strand, within EX31_RS12385at 147.262 kb on - strand, within EX31_RS12385at 147.262 kb on - strand, within EX31_RS12385at 147.262 kb on - strand, within EX31_RS12385at 147.262 kb on - strand, within EX31_RS12385at 147.262 kb on - strand, within EX31_RS12385at 147.262 kb on - strand, within EX31_RS12385at 147.262 kb on - strand, within EX31_RS12385at 147.341 kb on - strandat 147.341 kb on - strandat 147.341 kb on - strandat 147.472 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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145,285 - EX31_RS12375 0.49 -1.1
145,285 - EX31_RS12375 0.49 -0.0
145,350 + EX31_RS12375 0.53 -0.6
145,350 + EX31_RS12375 0.53 -0.4
145,351 - EX31_RS12375 0.53 +0.1
145,351 - EX31_RS12375 0.53 -0.1
145,354 - EX31_RS12375 0.53 -0.7
145,374 + EX31_RS12375 0.54 -0.4
145,375 - EX31_RS12375 0.54 -0.3
145,402 + EX31_RS12375 0.56 +0.5
145,403 - EX31_RS12375 0.56 -1.4
145,403 - EX31_RS12375 0.56 +0.3
145,410 + EX31_RS12375 0.56 -1.0
145,441 + EX31_RS12375 0.58 -0.2
145,441 + EX31_RS12375 0.58 -0.1
145,450 + EX31_RS12375 0.58 -0.1
145,450 + EX31_RS12375 0.58 -0.2
145,451 - EX31_RS12375 0.58 -0.4
145,452 + EX31_RS12375 0.58 -0.5
145,452 + EX31_RS12375 0.58 +1.3
145,452 + EX31_RS12375 0.58 -1.7
145,453 - EX31_RS12375 0.58 -0.2
145,453 - EX31_RS12375 0.58 -0.9
145,453 - EX31_RS12375 0.58 +0.3
145,453 - EX31_RS12375 0.58 -0.9
145,516 + EX31_RS12375 0.62 +1.0
145,516 + EX31_RS12375 0.62 +0.6
145,516 + EX31_RS12375 0.62 +1.4
145,517 - EX31_RS12375 0.62 -0.9
145,517 - EX31_RS12375 0.62 +0.8
145,517 - EX31_RS12375 0.62 -0.6
145,556 + EX31_RS12375 0.64 +0.4
145,557 - EX31_RS12375 0.64 -1.3
145,584 + EX31_RS12375 0.65 -0.7
145,584 + EX31_RS12375 0.65 +0.3
145,585 - EX31_RS12375 0.65 +0.4
145,654 + EX31_RS12375 0.69 +0.1
145,654 + EX31_RS12375 0.69 -1.0
145,654 + EX31_RS12375 0.69 +0.8
145,720 - EX31_RS12375 0.72 +0.1
145,784 + EX31_RS12375 0.75 -0.3
145,807 + EX31_RS12375 0.77 +0.5
145,807 + EX31_RS12375 0.77 +0.2
145,807 + EX31_RS12375 0.77 +0.6
145,807 + EX31_RS12375 0.77 +0.1
145,807 + EX31_RS12375 0.77 +0.6
145,807 + EX31_RS12375 0.77 +0.6
145,807 + EX31_RS12375 0.77 -0.7
145,807 + EX31_RS12375 0.77 -0.5
145,808 - EX31_RS12375 0.77 +0.3
145,808 - EX31_RS12375 0.77 -1.8
145,808 - EX31_RS12375 0.77 -0.3
145,809 + EX31_RS12375 0.77 -0.2
145,809 + EX31_RS12375 0.77 +0.3
145,809 + EX31_RS12375 0.77 +0.6
145,809 + EX31_RS12375 0.77 -0.0
145,809 + EX31_RS12375 0.77 +0.5
145,809 + EX31_RS12375 0.77 +0.1
145,809 + EX31_RS12375 0.77 +0.3
145,809 + EX31_RS12375 0.77 +1.6
145,809 + EX31_RS12375 0.77 +0.3
145,809 + EX31_RS12375 0.77 -0.5
145,809 + EX31_RS12375 0.77 +0.8
145,810 - EX31_RS12375 0.77 +0.1
145,810 - EX31_RS12375 0.77 -0.4
145,810 - EX31_RS12375 0.77 +0.9
145,810 - EX31_RS12375 0.77 -0.6
145,810 - EX31_RS12375 0.77 -0.1
145,810 - EX31_RS12375 0.77 -0.1
145,877 + EX31_RS12375 0.80 +0.2
145,877 + EX31_RS12375 0.80 +0.1
145,877 + EX31_RS12375 0.80 +0.2
145,877 + EX31_RS12375 0.80 -0.0
145,878 - EX31_RS12375 0.80 +0.5
145,878 - EX31_RS12375 0.80 -3.2
145,916 - EX31_RS12375 0.82 +0.3
145,916 - EX31_RS12375 0.82 -0.1
145,916 - EX31_RS12375 0.82 -0.8
146,036 + EX31_RS12375 0.89 -0.4
146,123 - +0.2
146,144 - -0.1
146,251 + -0.4
146,251 + -0.3
146,252 - -0.7
146,252 - +0.4
146,252 - +0.1
146,273 + -1.7
146,273 + +0.3
146,273 + -0.2
146,274 - +0.1
146,274 - +0.3
146,274 - +0.3
146,277 + +1.4
146,277 + -1.3
146,277 + +0.1
146,302 + -0.8
146,302 + -0.1
146,312 + EX31_RS12380 0.12 +0.8
146,313 - EX31_RS12380 0.12 -0.5
146,313 - EX31_RS12380 0.12 +1.0
146,313 - EX31_RS12380 0.12 +0.9
146,509 + EX31_RS12380 0.84 +1.0
146,510 - EX31_RS12380 0.85 +0.7
146,531 + +0.2
146,532 - +0.7
146,613 - +1.8
146,635 - EX31_RS12385 0.10 -0.6
146,636 + EX31_RS12385 0.10 -1.1
146,636 + EX31_RS12385 0.10 -0.1
146,636 + EX31_RS12385 0.10 +0.3
146,636 + EX31_RS12385 0.10 +0.0
146,637 - EX31_RS12385 0.10 -0.0
146,637 - EX31_RS12385 0.10 -2.1
146,637 - EX31_RS12385 0.10 -0.2
146,637 - EX31_RS12385 0.10 +0.1
146,637 - EX31_RS12385 0.10 +0.1
146,637 - EX31_RS12385 0.10 +0.0
146,637 - EX31_RS12385 0.10 +0.0
146,684 + EX31_RS12385 0.16 +0.6
146,684 + EX31_RS12385 0.16 +0.5
146,684 + EX31_RS12385 0.16 +0.5
146,684 + EX31_RS12385 0.16 -0.3
146,685 - EX31_RS12385 0.16 -0.4
146,685 - EX31_RS12385 0.16 +0.1
146,685 - EX31_RS12385 0.16 +0.7
146,685 - EX31_RS12385 0.16 +0.1
146,729 + EX31_RS12385 0.21 +0.4
146,729 + EX31_RS12385 0.21 +0.2
146,745 - EX31_RS12385 0.23 -0.4
146,748 + EX31_RS12385 0.23 +0.5
146,748 + EX31_RS12385 0.23 +0.4
146,749 - EX31_RS12385 0.24 +0.3
146,767 - EX31_RS12385 0.26 +0.6
146,796 + EX31_RS12385 0.29 +0.3
146,797 - EX31_RS12385 0.29 +0.7
147,132 + EX31_RS12385 0.68 +1.3
147,132 + EX31_RS12385 0.68 -1.1
147,132 + EX31_RS12385 0.68 +0.5
147,133 - EX31_RS12385 0.68 +0.4
147,155 - EX31_RS12385 0.71 +0.2
147,155 - EX31_RS12385 0.71 -0.0
147,155 - EX31_RS12385 0.71 +0.9
147,155 - EX31_RS12385 0.71 +0.5
147,155 - EX31_RS12385 0.71 +0.5
147,198 - EX31_RS12385 0.76 +0.3
147,198 - EX31_RS12385 0.76 +0.6
147,198 - EX31_RS12385 0.76 +0.4
147,198 - EX31_RS12385 0.76 +0.3
147,204 - EX31_RS12385 0.77 +0.3
147,204 - EX31_RS12385 0.77 +0.5
147,229 - EX31_RS12385 0.80 +1.4
147,229 - EX31_RS12385 0.80 +1.0
147,229 - EX31_RS12385 0.80 +0.4
147,258 + EX31_RS12385 0.83 -1.6
147,258 + EX31_RS12385 0.83 +0.1
147,258 + EX31_RS12385 0.83 +0.9
147,259 - EX31_RS12385 0.83 -0.5
147,259 - EX31_RS12385 0.83 -0.2
147,259 - EX31_RS12385 0.83 +0.6
147,259 - EX31_RS12385 0.83 -0.4
147,259 - EX31_RS12385 0.83 +1.4
147,259 - EX31_RS12385 0.83 +0.6
147,261 + EX31_RS12385 0.83 +0.9
147,261 + EX31_RS12385 0.83 -0.1
147,262 - EX31_RS12385 0.84 -1.1
147,262 - EX31_RS12385 0.84 -0.6
147,262 - EX31_RS12385 0.84 -0.2
147,262 - EX31_RS12385 0.84 +0.3
147,262 - EX31_RS12385 0.84 +0.3
147,262 - EX31_RS12385 0.84 -0.2
147,262 - EX31_RS12385 0.84 +0.5
147,262 - EX31_RS12385 0.84 +0.5
147,262 - EX31_RS12385 0.84 +0.4
147,341 - -0.1
147,341 - -1.1
147,341 - +0.7
147,472 - +0.7

Or see this region's nucleotide sequence