Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02580 and EX31_RS02585 overlap by 4 nucleotides EX31_RS02585 and EX31_RS02590 are separated by 4 nucleotides EX31_RS02590 and EX31_RS02595 overlap by 4 nucleotides EX31_RS02595 and EX31_RS02600 are separated by 93 nucleotides
EX31_RS02580: EX31_RS02580 - ABC transporter permease, at 547,749 to 548,723
_RS02580
EX31_RS02585: EX31_RS02585 - nucleoside hydrolase, at 548,720 to 549,682
_RS02585
EX31_RS02590: EX31_RS02590 - nucleoside hydrolase, at 549,687 to 550,637
_RS02590
EX31_RS02595: EX31_RS02595 - dihydrodipicolinate synthase family protein, at 550,634 to 551,518
_RS02595
EX31_RS02600: EX31_RS02600 - ABC transporter substrate-binding protein, at 551,612 to 553,171
_RS02600
Position (kb) 549
550
551 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 548.857 kb on - strand, within EX31_RS02585 at 548.862 kb on + strand, within EX31_RS02585 at 548.863 kb on - strand, within EX31_RS02585 at 548.863 kb on - strand, within EX31_RS02585 at 549.013 kb on + strand, within EX31_RS02585 at 549.014 kb on - strand, within EX31_RS02585 at 549.014 kb on - strand, within EX31_RS02585 at 549.017 kb on + strand, within EX31_RS02585 at 549.018 kb on - strand, within EX31_RS02585 at 549.028 kb on + strand, within EX31_RS02585 at 549.028 kb on + strand, within EX31_RS02585 at 549.028 kb on + strand, within EX31_RS02585 at 549.029 kb on - strand, within EX31_RS02585 at 549.029 kb on - strand, within EX31_RS02585 at 549.029 kb on - strand, within EX31_RS02585 at 549.029 kb on - strand, within EX31_RS02585 at 549.029 kb on - strand, within EX31_RS02585 at 549.059 kb on + strand, within EX31_RS02585 at 549.060 kb on - strand, within EX31_RS02585 at 549.060 kb on - strand, within EX31_RS02585 at 549.139 kb on + strand, within EX31_RS02585 at 549.172 kb on - strand, within EX31_RS02585 at 549.290 kb on - strand, within EX31_RS02585 at 549.290 kb on - strand, within EX31_RS02585 at 549.350 kb on + strand, within EX31_RS02585 at 549.350 kb on + strand, within EX31_RS02585 at 549.350 kb on + strand, within EX31_RS02585 at 549.351 kb on - strand, within EX31_RS02585 at 549.444 kb on + strand, within EX31_RS02585 at 549.444 kb on + strand, within EX31_RS02585 at 549.444 kb on + strand, within EX31_RS02585 at 549.445 kb on - strand, within EX31_RS02585 at 549.445 kb on - strand, within EX31_RS02585 at 549.445 kb on - strand, within EX31_RS02585 at 549.689 kb on - strand at 549.819 kb on - strand, within EX31_RS02590 at 549.819 kb on - strand, within EX31_RS02590 at 549.819 kb on - strand, within EX31_RS02590 at 549.889 kb on + strand, within EX31_RS02590 at 549.889 kb on + strand, within EX31_RS02590 at 549.890 kb on - strand, within EX31_RS02590 at 549.890 kb on - strand, within EX31_RS02590 at 549.890 kb on - strand, within EX31_RS02590 at 549.890 kb on - strand, within EX31_RS02590 at 549.890 kb on - strand, within EX31_RS02590 at 549.969 kb on + strand, within EX31_RS02590 at 549.969 kb on + strand, within EX31_RS02590 at 550.100 kb on + strand, within EX31_RS02590 at 550.101 kb on - strand, within EX31_RS02590 at 550.283 kb on + strand, within EX31_RS02590 at 550.284 kb on - strand, within EX31_RS02590 at 550.284 kb on - strand, within EX31_RS02590 at 550.370 kb on + strand, within EX31_RS02590 at 550.493 kb on + strand, within EX31_RS02590 at 550.493 kb on + strand, within EX31_RS02590 at 550.494 kb on - strand, within EX31_RS02590 at 550.494 kb on - strand, within EX31_RS02590 at 550.754 kb on - strand, within EX31_RS02595 at 550.756 kb on + strand, within EX31_RS02595 at 550.757 kb on - strand, within EX31_RS02595 at 550.757 kb on - strand, within EX31_RS02595 at 550.757 kb on - strand, within EX31_RS02595 at 550.757 kb on - strand, within EX31_RS02595 at 550.768 kb on + strand, within EX31_RS02595 at 550.773 kb on + strand, within EX31_RS02595 at 550.773 kb on + strand, within EX31_RS02595 at 550.774 kb on - strand, within EX31_RS02595 at 550.774 kb on - strand, within EX31_RS02595 at 550.857 kb on + strand, within EX31_RS02595 at 550.885 kb on + strand, within EX31_RS02595 at 550.886 kb on - strand, within EX31_RS02595 at 550.942 kb on + strand, within EX31_RS02595 at 550.942 kb on + strand, within EX31_RS02595 at 550.942 kb on + strand, within EX31_RS02595 at 550.942 kb on + strand, within EX31_RS02595 at 550.943 kb on - strand, within EX31_RS02595 at 550.943 kb on - strand, within EX31_RS02595 at 550.943 kb on - strand, within EX31_RS02595 at 550.943 kb on - strand, within EX31_RS02595 at 550.943 kb on - strand, within EX31_RS02595 at 550.943 kb on - strand, within EX31_RS02595 at 550.961 kb on + strand, within EX31_RS02595 at 550.961 kb on + strand, within EX31_RS02595 at 550.962 kb on - strand, within EX31_RS02595 at 551.029 kb on + strand, within EX31_RS02595 at 551.032 kb on + strand, within EX31_RS02595 at 551.032 kb on + strand, within EX31_RS02595 at 551.032 kb on + strand, within EX31_RS02595 at 551.032 kb on + strand, within EX31_RS02595 at 551.033 kb on - strand, within EX31_RS02595 at 551.033 kb on - strand, within EX31_RS02595 at 551.034 kb on + strand, within EX31_RS02595 at 551.034 kb on + strand, within EX31_RS02595 at 551.034 kb on + strand, within EX31_RS02595 at 551.034 kb on + strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.042 kb on - strand, within EX31_RS02595 at 551.042 kb on - strand, within EX31_RS02595 at 551.111 kb on - strand, within EX31_RS02595 at 551.112 kb on + strand, within EX31_RS02595 at 551.113 kb on - strand, within EX31_RS02595 at 551.113 kb on - strand, within EX31_RS02595 at 551.337 kb on - strand, within EX31_RS02595 at 551.491 kb on - strand at 551.518 kb on + strand at 551.519 kb on - strand at 551.519 kb on - strand at 551.519 kb on - strand at 551.535 kb on - strand at 551.538 kb on - strand at 551.538 kb on - strand at 551.542 kb on + strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.545 kb on + strand at 551.546 kb on - strand at 551.546 kb on - strand at 551.551 kb on - strand at 551.551 kb on - strand at 551.551 kb on - strand at 551.551 kb on - strand at 551.553 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 548,857 - EX31_RS02585 0.14 -1.0 548,862 + EX31_RS02585 0.15 -0.0 548,863 - EX31_RS02585 0.15 +0.4 548,863 - EX31_RS02585 0.15 -0.4 549,013 + EX31_RS02585 0.30 +0.4 549,014 - EX31_RS02585 0.31 -0.7 549,014 - EX31_RS02585 0.31 +0.0 549,017 + EX31_RS02585 0.31 -1.0 549,018 - EX31_RS02585 0.31 -1.2 549,028 + EX31_RS02585 0.32 +1.6 549,028 + EX31_RS02585 0.32 -0.1 549,028 + EX31_RS02585 0.32 -0.5 549,029 - EX31_RS02585 0.32 +0.7 549,029 - EX31_RS02585 0.32 +0.3 549,029 - EX31_RS02585 0.32 +0.2 549,029 - EX31_RS02585 0.32 -2.2 549,029 - EX31_RS02585 0.32 -0.5 549,059 + EX31_RS02585 0.35 +0.1 549,060 - EX31_RS02585 0.35 -2.0 549,060 - EX31_RS02585 0.35 +0.2 549,139 + EX31_RS02585 0.44 -0.3 549,172 - EX31_RS02585 0.47 -0.3 549,290 - EX31_RS02585 0.59 -1.0 549,290 - EX31_RS02585 0.59 +0.4 549,350 + EX31_RS02585 0.65 +1.0 549,350 + EX31_RS02585 0.65 +0.2 549,350 + EX31_RS02585 0.65 -0.5 549,351 - EX31_RS02585 0.66 -0.7 549,444 + EX31_RS02585 0.75 +0.2 549,444 + EX31_RS02585 0.75 -0.9 549,444 + EX31_RS02585 0.75 +0.7 549,445 - EX31_RS02585 0.75 -3.9 549,445 - EX31_RS02585 0.75 -0.2 549,445 - EX31_RS02585 0.75 -0.3 549,689 - -0.9 549,819 - EX31_RS02590 0.14 +0.3 549,819 - EX31_RS02590 0.14 -1.1 549,819 - EX31_RS02590 0.14 +1.1 549,889 + EX31_RS02590 0.21 +0.0 549,889 + EX31_RS02590 0.21 -0.8 549,890 - EX31_RS02590 0.21 -1.5 549,890 - EX31_RS02590 0.21 +0.4 549,890 - EX31_RS02590 0.21 -2.4 549,890 - EX31_RS02590 0.21 -0.0 549,890 - EX31_RS02590 0.21 +0.2 549,969 + EX31_RS02590 0.30 -0.4 549,969 + EX31_RS02590 0.30 -2.1 550,100 + EX31_RS02590 0.43 -1.0 550,101 - EX31_RS02590 0.44 -2.7 550,283 + EX31_RS02590 0.63 -0.7 550,284 - EX31_RS02590 0.63 -0.3 550,284 - EX31_RS02590 0.63 +0.2 550,370 + EX31_RS02590 0.72 +0.6 550,493 + EX31_RS02590 0.85 +0.1 550,493 + EX31_RS02590 0.85 -1.1 550,494 - EX31_RS02590 0.85 -0.0 550,494 - EX31_RS02590 0.85 -2.5 550,754 - EX31_RS02595 0.14 -1.0 550,756 + EX31_RS02595 0.14 +1.7 550,757 - EX31_RS02595 0.14 -0.4 550,757 - EX31_RS02595 0.14 -0.7 550,757 - EX31_RS02595 0.14 +0.7 550,757 - EX31_RS02595 0.14 +0.6 550,768 + EX31_RS02595 0.15 -1.0 550,773 + EX31_RS02595 0.16 -0.3 550,773 + EX31_RS02595 0.16 -0.7 550,774 - EX31_RS02595 0.16 -0.7 550,774 - EX31_RS02595 0.16 -0.3 550,857 + EX31_RS02595 0.25 -3.2 550,885 + EX31_RS02595 0.28 -1.5 550,886 - EX31_RS02595 0.28 -0.6 550,942 + EX31_RS02595 0.35 +0.8 550,942 + EX31_RS02595 0.35 -0.8 550,942 + EX31_RS02595 0.35 +0.4 550,942 + EX31_RS02595 0.35 -0.8 550,943 - EX31_RS02595 0.35 -1.6 550,943 - EX31_RS02595 0.35 -1.3 550,943 - EX31_RS02595 0.35 +0.0 550,943 - EX31_RS02595 0.35 +0.9 550,943 - EX31_RS02595 0.35 -1.3 550,943 - EX31_RS02595 0.35 -0.6 550,961 + EX31_RS02595 0.37 -0.1 550,961 + EX31_RS02595 0.37 -0.8 550,962 - EX31_RS02595 0.37 +0.5 551,029 + EX31_RS02595 0.45 -0.9 551,032 + EX31_RS02595 0.45 -1.4 551,032 + EX31_RS02595 0.45 +1.0 551,032 + EX31_RS02595 0.45 -0.4 551,032 + EX31_RS02595 0.45 -0.3 551,033 - EX31_RS02595 0.45 -0.9 551,033 - EX31_RS02595 0.45 +0.2 551,034 + EX31_RS02595 0.45 -3.2 551,034 + EX31_RS02595 0.45 -2.5 551,034 + EX31_RS02595 0.45 -2.1 551,034 + EX31_RS02595 0.45 -1.3 551,035 - EX31_RS02595 0.45 -0.5 551,035 - EX31_RS02595 0.45 -0.2 551,035 - EX31_RS02595 0.45 +0.1 551,035 - EX31_RS02595 0.45 -1.5 551,035 - EX31_RS02595 0.45 +0.3 551,035 - EX31_RS02595 0.45 +0.7 551,035 - EX31_RS02595 0.45 -1.5 551,035 - EX31_RS02595 0.45 -0.3 551,035 - EX31_RS02595 0.45 +0.3 551,035 - EX31_RS02595 0.45 -1.8 551,042 - EX31_RS02595 0.46 -2.3 551,042 - EX31_RS02595 0.46 -0.2 551,111 - EX31_RS02595 0.54 +0.5 551,112 + EX31_RS02595 0.54 +0.8 551,113 - EX31_RS02595 0.54 -0.8 551,113 - EX31_RS02595 0.54 -0.1 551,337 - EX31_RS02595 0.79 -0.1 551,491 - -0.9 551,518 + -0.5 551,519 - +0.9 551,519 - +0.2 551,519 - +0.5 551,535 - +0.1 551,538 - +0.6 551,538 - -0.3 551,542 + -0.7 551,543 - -0.2 551,543 - +0.1 551,543 - +0.2 551,543 - -1.3 551,543 - -0.4 551,543 - +0.3 551,543 - -1.0 551,543 - -0.0 551,543 - -1.5 551,543 - -0.5 551,543 - +0.5 551,543 - +0.4 551,543 - -0.3 551,543 - -1.0 551,543 - -0.3 551,545 + -0.6 551,546 - -1.4 551,546 - -0.1 551,551 - -0.4 551,551 - -0.6 551,551 - -0.2 551,551 - -0.1 551,553 + -1.2
Or see this region's nucleotide sequence