Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01385 and EX31_RS01390 are separated by 140 nucleotides EX31_RS01390 and EX31_RS01395 are separated by 129 nucleotides
EX31_RS01385: EX31_RS01385 - EamA family transporter, at 308,651 to 309,574
_RS01385
EX31_RS01390: EX31_RS01390 - hypothetical protein, at 309,715 to 310,437
_RS01390
EX31_RS01395: EX31_RS01395 - DHA2 family efflux MFS transporter permease subunit, at 310,567 to 312,012
_RS01395
Position (kb) 309
310
311 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 308.872 kb on - strand, within EX31_RS01385 at 308.881 kb on - strand, within EX31_RS01385 at 308.899 kb on + strand, within EX31_RS01385 at 308.971 kb on + strand, within EX31_RS01385 at 308.971 kb on + strand, within EX31_RS01385 at 308.972 kb on - strand, within EX31_RS01385 at 308.972 kb on - strand, within EX31_RS01385 at 308.974 kb on - strand, within EX31_RS01385 at 308.974 kb on - strand, within EX31_RS01385 at 308.974 kb on - strand, within EX31_RS01385 at 309.094 kb on - strand, within EX31_RS01385 at 309.330 kb on + strand, within EX31_RS01385 at 309.330 kb on + strand, within EX31_RS01385 at 309.330 kb on + strand, within EX31_RS01385 at 309.330 kb on + strand, within EX31_RS01385 at 309.330 kb on + strand, within EX31_RS01385 at 309.330 kb on + strand, within EX31_RS01385 at 309.331 kb on - strand, within EX31_RS01385 at 309.331 kb on - strand, within EX31_RS01385 at 309.331 kb on - strand, within EX31_RS01385 at 309.546 kb on - strand at 309.632 kb on + strand at 309.632 kb on + strand at 309.633 kb on - strand at 309.643 kb on - strand at 309.651 kb on + strand at 309.693 kb on + strand at 309.714 kb on - strand at 309.908 kb on - strand, within EX31_RS01390 at 310.179 kb on + strand, within EX31_RS01390 at 310.179 kb on + strand, within EX31_RS01390 at 310.180 kb on - strand, within EX31_RS01390 at 310.435 kb on + strand at 310.473 kb on + strand at 310.473 kb on + strand at 310.473 kb on + strand at 310.474 kb on - strand at 310.511 kb on - strand at 310.620 kb on + strand at 310.620 kb on + strand at 310.621 kb on - strand at 310.768 kb on + strand, within EX31_RS01395 at 310.768 kb on + strand, within EX31_RS01395 at 310.769 kb on - strand, within EX31_RS01395 at 310.769 kb on - strand, within EX31_RS01395 at 310.770 kb on + strand, within EX31_RS01395 at 310.770 kb on + strand, within EX31_RS01395 at 310.771 kb on - strand, within EX31_RS01395 at 310.926 kb on + strand, within EX31_RS01395 at 310.926 kb on + strand, within EX31_RS01395 at 310.926 kb on + strand, within EX31_RS01395 at 310.927 kb on - strand, within EX31_RS01395 at 310.927 kb on - strand, within EX31_RS01395 at 310.927 kb on - strand, within EX31_RS01395 at 311.013 kb on + strand, within EX31_RS01395 at 311.013 kb on + strand, within EX31_RS01395 at 311.014 kb on - strand, within EX31_RS01395 at 311.086 kb on + strand, within EX31_RS01395 at 311.110 kb on + strand, within EX31_RS01395 at 311.111 kb on - strand, within EX31_RS01395 at 311.111 kb on - strand, within EX31_RS01395 at 311.213 kb on + strand, within EX31_RS01395 at 311.213 kb on + strand, within EX31_RS01395 at 311.213 kb on + strand, within EX31_RS01395 at 311.214 kb on - strand, within EX31_RS01395 at 311.279 kb on + strand, within EX31_RS01395 at 311.279 kb on + strand, within EX31_RS01395 at 311.294 kb on + strand, within EX31_RS01395 at 311.294 kb on + strand, within EX31_RS01395 at 311.295 kb on - strand, within EX31_RS01395 at 311.404 kb on - strand, within EX31_RS01395 at 311.409 kb on + strand, within EX31_RS01395 at 311.410 kb on - strand, within EX31_RS01395
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 308,872 - EX31_RS01385 0.24 +1.1 308,881 - EX31_RS01385 0.25 -0.6 308,899 + EX31_RS01385 0.27 -0.3 308,971 + EX31_RS01385 0.35 -0.6 308,971 + EX31_RS01385 0.35 +0.3 308,972 - EX31_RS01385 0.35 +0.9 308,972 - EX31_RS01385 0.35 +0.4 308,974 - EX31_RS01385 0.35 +1.3 308,974 - EX31_RS01385 0.35 -0.4 308,974 - EX31_RS01385 0.35 +0.2 309,094 - EX31_RS01385 0.48 +0.1 309,330 + EX31_RS01385 0.73 +0.2 309,330 + EX31_RS01385 0.73 +0.2 309,330 + EX31_RS01385 0.73 -1.6 309,330 + EX31_RS01385 0.73 -0.5 309,330 + EX31_RS01385 0.73 -0.6 309,330 + EX31_RS01385 0.73 +1.4 309,331 - EX31_RS01385 0.74 -0.5 309,331 - EX31_RS01385 0.74 -2.3 309,331 - EX31_RS01385 0.74 -2.2 309,546 - -0.0 309,632 + +0.8 309,632 + -0.2 309,633 - -0.7 309,643 - +1.3 309,651 + -0.2 309,693 + +1.2 309,714 - -0.5 309,908 - EX31_RS01390 0.27 -1.3 310,179 + EX31_RS01390 0.64 -0.3 310,179 + EX31_RS01390 0.64 -2.4 310,180 - EX31_RS01390 0.64 +0.3 310,435 + +1.4 310,473 + -0.7 310,473 + +1.3 310,473 + +0.3 310,474 - +0.7 310,511 - -1.8 310,620 + -3.1 310,620 + -0.0 310,621 - +0.0 310,768 + EX31_RS01395 0.14 -1.4 310,768 + EX31_RS01395 0.14 -3.4 310,769 - EX31_RS01395 0.14 +0.2 310,769 - EX31_RS01395 0.14 +0.2 310,770 + EX31_RS01395 0.14 +0.4 310,770 + EX31_RS01395 0.14 +0.8 310,771 - EX31_RS01395 0.14 +0.2 310,926 + EX31_RS01395 0.25 -0.5 310,926 + EX31_RS01395 0.25 +0.5 310,926 + EX31_RS01395 0.25 -0.4 310,927 - EX31_RS01395 0.25 +1.5 310,927 - EX31_RS01395 0.25 -1.2 310,927 - EX31_RS01395 0.25 +0.5 311,013 + EX31_RS01395 0.31 -2.8 311,013 + EX31_RS01395 0.31 +0.8 311,014 - EX31_RS01395 0.31 -1.9 311,086 + EX31_RS01395 0.36 -0.1 311,110 + EX31_RS01395 0.38 +0.6 311,111 - EX31_RS01395 0.38 +0.3 311,111 - EX31_RS01395 0.38 +1.0 311,213 + EX31_RS01395 0.45 +1.3 311,213 + EX31_RS01395 0.45 +0.8 311,213 + EX31_RS01395 0.45 -0.6 311,214 - EX31_RS01395 0.45 +0.4 311,279 + EX31_RS01395 0.49 -0.0 311,279 + EX31_RS01395 0.49 +0.1 311,294 + EX31_RS01395 0.50 +2.1 311,294 + EX31_RS01395 0.50 +1.3 311,295 - EX31_RS01395 0.50 -2.1 311,404 - EX31_RS01395 0.58 +0.7 311,409 + EX31_RS01395 0.58 +0.7 311,410 - EX31_RS01395 0.58 -0.2
Or see this region's nucleotide sequence