Strain Fitness in Rahnella sp. WP5 around EX31_RS01055

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01050 and EX31_RS01055 are separated by 87 nucleotidesEX31_RS01055 and EX31_RS01060 are separated by 116 nucleotides EX31_RS01050: EX31_RS01050 - ROK family protein, at 230,285 to 231,283 _RS01050 EX31_RS01055: EX31_RS01055 - MFS transporter, at 231,371 to 232,543 _RS01055 EX31_RS01060: EX31_RS01060 - HAD family hydrolase, at 232,660 to 233,472 _RS01060 Position (kb) 231 232 233Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 230.511 kb on - strand, within EX31_RS01050at 230.516 kb on + strand, within EX31_RS01050at 230.516 kb on + strand, within EX31_RS01050at 230.516 kb on + strand, within EX31_RS01050at 230.516 kb on + strand, within EX31_RS01050at 230.516 kb on + strand, within EX31_RS01050at 230.516 kb on + strand, within EX31_RS01050at 230.516 kb on + strand, within EX31_RS01050at 230.516 kb on + strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.518 kb on + strand, within EX31_RS01050at 230.519 kb on - strand, within EX31_RS01050at 230.549 kb on + strand, within EX31_RS01050at 230.582 kb on - strand, within EX31_RS01050at 230.664 kb on - strand, within EX31_RS01050at 230.822 kb on + strand, within EX31_RS01050at 230.823 kb on - strand, within EX31_RS01050at 230.823 kb on - strand, within EX31_RS01050at 230.849 kb on + strand, within EX31_RS01050at 230.906 kb on + strand, within EX31_RS01050at 230.906 kb on + strand, within EX31_RS01050at 230.907 kb on - strand, within EX31_RS01050at 230.910 kb on + strand, within EX31_RS01050at 230.910 kb on + strand, within EX31_RS01050at 230.910 kb on + strand, within EX31_RS01050at 230.910 kb on + strand, within EX31_RS01050at 230.910 kb on + strand, within EX31_RS01050at 230.910 kb on + strand, within EX31_RS01050at 230.910 kb on + strand, within EX31_RS01050at 230.911 kb on - strand, within EX31_RS01050at 230.911 kb on - strand, within EX31_RS01050at 230.911 kb on - strand, within EX31_RS01050at 230.911 kb on - strand, within EX31_RS01050at 230.911 kb on - strand, within EX31_RS01050at 230.965 kb on - strand, within EX31_RS01050at 230.967 kb on + strand, within EX31_RS01050at 230.967 kb on + strand, within EX31_RS01050at 230.967 kb on + strand, within EX31_RS01050at 230.968 kb on - strand, within EX31_RS01050at 231.161 kb on + strand, within EX31_RS01050at 231.161 kb on + strand, within EX31_RS01050at 231.162 kb on - strand, within EX31_RS01050at 231.162 kb on - strand, within EX31_RS01050at 231.162 kb on - strand, within EX31_RS01050at 231.162 kb on - strand, within EX31_RS01050at 231.162 kb on - strand, within EX31_RS01050at 231.162 kb on - strand, within EX31_RS01050at 231.162 kb on - strand, within EX31_RS01050at 231.163 kb on + strand, within EX31_RS01050at 231.164 kb on - strand, within EX31_RS01050at 231.178 kb on + strand, within EX31_RS01050at 231.179 kb on - strand, within EX31_RS01050at 231.179 kb on - strand, within EX31_RS01050at 231.179 kb on - strand, within EX31_RS01050at 231.195 kb on - strandat 231.250 kb on + strandat 231.250 kb on + strandat 231.251 kb on - strandat 231.251 kb on - strandat 231.251 kb on - strandat 231.251 kb on - strandat 231.254 kb on + strandat 231.254 kb on + strandat 231.255 kb on - strandat 231.282 kb on - strandat 231.399 kb on + strandat 231.399 kb on + strandat 231.540 kb on + strand, within EX31_RS01055at 231.647 kb on + strand, within EX31_RS01055at 231.647 kb on + strand, within EX31_RS01055at 231.648 kb on - strand, within EX31_RS01055at 231.712 kb on + strand, within EX31_RS01055at 231.712 kb on + strand, within EX31_RS01055at 231.712 kb on + strand, within EX31_RS01055at 231.951 kb on + strand, within EX31_RS01055at 232.051 kb on + strand, within EX31_RS01055at 232.051 kb on + strand, within EX31_RS01055at 232.052 kb on - strand, within EX31_RS01055at 232.086 kb on + strand, within EX31_RS01055at 232.086 kb on + strand, within EX31_RS01055at 232.332 kb on + strand, within EX31_RS01055at 232.332 kb on + strand, within EX31_RS01055at 232.381 kb on + strand, within EX31_RS01055at 232.381 kb on + strand, within EX31_RS01055at 232.381 kb on + strand, within EX31_RS01055at 232.381 kb on + strand, within EX31_RS01055at 232.381 kb on + strand, within EX31_RS01055at 232.382 kb on - strand, within EX31_RS01055at 232.382 kb on - strand, within EX31_RS01055at 232.470 kb on + strandat 232.470 kb on + strandat 232.470 kb on + strandat 232.471 kb on - strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.473 kb on - strandat 232.473 kb on - strandat 232.492 kb on - strandat 232.527 kb on - strandat 232.538 kb on + strandat 232.620 kb on + strandat 232.668 kb on - strandat 232.682 kb on + strandat 232.725 kb on + strandat 232.747 kb on + strand, within EX31_RS01060at 232.794 kb on + strand, within EX31_RS01060at 232.801 kb on + strand, within EX31_RS01060at 232.812 kb on + strand, within EX31_RS01060at 232.813 kb on - strand, within EX31_RS01060at 232.849 kb on + strand, within EX31_RS01060at 232.871 kb on - strand, within EX31_RS01060at 232.934 kb on + strand, within EX31_RS01060at 232.996 kb on + strand, within EX31_RS01060at 232.996 kb on + strand, within EX31_RS01060at 232.996 kb on + strand, within EX31_RS01060at 232.996 kb on + strand, within EX31_RS01060at 232.996 kb on + strand, within EX31_RS01060at 232.996 kb on + strand, within EX31_RS01060at 232.997 kb on - strand, within EX31_RS01060at 232.997 kb on - strand, within EX31_RS01060at 233.000 kb on + strand, within EX31_RS01060at 233.000 kb on + strand, within EX31_RS01060at 233.000 kb on + strand, within EX31_RS01060at 233.000 kb on + strand, within EX31_RS01060at 233.044 kb on + strand, within EX31_RS01060at 233.047 kb on + strand, within EX31_RS01060at 233.047 kb on + strand, within EX31_RS01060at 233.048 kb on - strand, within EX31_RS01060at 233.074 kb on + strand, within EX31_RS01060at 233.112 kb on + strand, within EX31_RS01060at 233.112 kb on + strand, within EX31_RS01060at 233.112 kb on + strand, within EX31_RS01060at 233.113 kb on - strand, within EX31_RS01060at 233.116 kb on + strand, within EX31_RS01060at 233.116 kb on + strand, within EX31_RS01060at 233.143 kb on - strand, within EX31_RS01060at 233.172 kb on + strand, within EX31_RS01060at 233.173 kb on - strand, within EX31_RS01060at 233.173 kb on - strand, within EX31_RS01060at 233.267 kb on - strand, within EX31_RS01060at 233.332 kb on + strand, within EX31_RS01060at 233.333 kb on - strand, within EX31_RS01060

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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230,511 - EX31_RS01050 0.23 -0.2
230,516 + EX31_RS01050 0.23 +0.4
230,516 + EX31_RS01050 0.23 +0.2
230,516 + EX31_RS01050 0.23 -1.3
230,516 + EX31_RS01050 0.23 +0.5
230,516 + EX31_RS01050 0.23 +2.2
230,516 + EX31_RS01050 0.23 -0.1
230,516 + EX31_RS01050 0.23 +0.8
230,516 + EX31_RS01050 0.23 -0.3
230,517 - EX31_RS01050 0.23 -1.0
230,517 - EX31_RS01050 0.23 +0.2
230,517 - EX31_RS01050 0.23 +0.9
230,517 - EX31_RS01050 0.23 -1.6
230,517 - EX31_RS01050 0.23 -0.7
230,517 - EX31_RS01050 0.23 -1.0
230,517 - EX31_RS01050 0.23 +1.0
230,517 - EX31_RS01050 0.23 +1.5
230,517 - EX31_RS01050 0.23 +0.3
230,517 - EX31_RS01050 0.23 +0.4
230,517 - EX31_RS01050 0.23 -2.4
230,517 - EX31_RS01050 0.23 -0.1
230,517 - EX31_RS01050 0.23 -1.4
230,518 + EX31_RS01050 0.23 +0.2
230,519 - EX31_RS01050 0.23 -2.1
230,549 + EX31_RS01050 0.26 +0.3
230,582 - EX31_RS01050 0.30 +0.4
230,664 - EX31_RS01050 0.38 -0.1
230,822 + EX31_RS01050 0.54 -1.0
230,823 - EX31_RS01050 0.54 -0.3
230,823 - EX31_RS01050 0.54 -0.6
230,849 + EX31_RS01050 0.56 -0.6
230,906 + EX31_RS01050 0.62 +0.8
230,906 + EX31_RS01050 0.62 +0.7
230,907 - EX31_RS01050 0.62 -0.1
230,910 + EX31_RS01050 0.63 -0.9
230,910 + EX31_RS01050 0.63 -0.3
230,910 + EX31_RS01050 0.63 -1.0
230,910 + EX31_RS01050 0.63 -2.4
230,910 + EX31_RS01050 0.63 -0.9
230,910 + EX31_RS01050 0.63 -2.0
230,910 + EX31_RS01050 0.63 -1.6
230,911 - EX31_RS01050 0.63 +0.5
230,911 - EX31_RS01050 0.63 +0.1
230,911 - EX31_RS01050 0.63 -0.8
230,911 - EX31_RS01050 0.63 +0.2
230,911 - EX31_RS01050 0.63 +1.1
230,965 - EX31_RS01050 0.68 +0.9
230,967 + EX31_RS01050 0.68 +0.4
230,967 + EX31_RS01050 0.68 +0.1
230,967 + EX31_RS01050 0.68 -2.1
230,968 - EX31_RS01050 0.68 -0.0
231,161 + EX31_RS01050 0.88 +0.9
231,161 + EX31_RS01050 0.88 +0.2
231,162 - EX31_RS01050 0.88 +1.3
231,162 - EX31_RS01050 0.88 -0.1
231,162 - EX31_RS01050 0.88 -0.5
231,162 - EX31_RS01050 0.88 -0.6
231,162 - EX31_RS01050 0.88 +0.2
231,162 - EX31_RS01050 0.88 -3.2
231,162 - EX31_RS01050 0.88 +0.8
231,163 + EX31_RS01050 0.88 +2.7
231,164 - EX31_RS01050 0.88 -1.7
231,178 + EX31_RS01050 0.89 +0.8
231,179 - EX31_RS01050 0.89 -1.0
231,179 - EX31_RS01050 0.89 +0.5
231,179 - EX31_RS01050 0.89 +0.7
231,195 - -0.2
231,250 + -1.1
231,250 + +1.1
231,251 - +0.5
231,251 - -0.1
231,251 - -1.0
231,251 - -1.4
231,254 + -2.4
231,254 + +0.3
231,255 - -0.0
231,282 - -1.4
231,399 + -0.3
231,399 + -0.8
231,540 + EX31_RS01055 0.14 -0.9
231,647 + EX31_RS01055 0.24 +0.3
231,647 + EX31_RS01055 0.24 -0.8
231,648 - EX31_RS01055 0.24 -2.7
231,712 + EX31_RS01055 0.29 -0.5
231,712 + EX31_RS01055 0.29 -3.2
231,712 + EX31_RS01055 0.29 -1.6
231,951 + EX31_RS01055 0.49 -1.3
232,051 + EX31_RS01055 0.58 -0.4
232,051 + EX31_RS01055 0.58 -0.8
232,052 - EX31_RS01055 0.58 -1.0
232,086 + EX31_RS01055 0.61 -0.4
232,086 + EX31_RS01055 0.61 -0.4
232,332 + EX31_RS01055 0.82 -2.3
232,332 + EX31_RS01055 0.82 +0.7
232,381 + EX31_RS01055 0.86 -1.5
232,381 + EX31_RS01055 0.86 -0.4
232,381 + EX31_RS01055 0.86 +1.5
232,381 + EX31_RS01055 0.86 -1.0
232,381 + EX31_RS01055 0.86 +1.6
232,382 - EX31_RS01055 0.86 -1.0
232,382 - EX31_RS01055 0.86 +3.3
232,470 + +0.6
232,470 + -2.2
232,470 + -0.5
232,471 - -3.1
232,472 + -0.4
232,472 + +0.8
232,472 + +0.1
232,472 + -0.4
232,472 + -0.9
232,472 + -0.1
232,472 + +0.5
232,472 + -0.9
232,472 + +0.7
232,472 + -1.2
232,473 - +2.0
232,473 - -1.1
232,492 - -1.2
232,527 - -0.6
232,538 + -0.0
232,620 + +0.3
232,668 - +0.0
232,682 + -0.5
232,725 + +1.5
232,747 + EX31_RS01060 0.11 -1.0
232,794 + EX31_RS01060 0.16 +2.0
232,801 + EX31_RS01060 0.17 +0.4
232,812 + EX31_RS01060 0.19 -2.5
232,813 - EX31_RS01060 0.19 -0.0
232,849 + EX31_RS01060 0.23 +0.1
232,871 - EX31_RS01060 0.26 +1.0
232,934 + EX31_RS01060 0.34 +0.8
232,996 + EX31_RS01060 0.41 +0.2
232,996 + EX31_RS01060 0.41 -1.1
232,996 + EX31_RS01060 0.41 -3.0
232,996 + EX31_RS01060 0.41 +0.4
232,996 + EX31_RS01060 0.41 -2.2
232,996 + EX31_RS01060 0.41 +1.3
232,997 - EX31_RS01060 0.41 +1.4
232,997 - EX31_RS01060 0.41 -2.2
233,000 + EX31_RS01060 0.42 -0.2
233,000 + EX31_RS01060 0.42 +0.5
233,000 + EX31_RS01060 0.42 -1.4
233,000 + EX31_RS01060 0.42 +0.1
233,044 + EX31_RS01060 0.47 -0.3
233,047 + EX31_RS01060 0.48 -1.4
233,047 + EX31_RS01060 0.48 -1.0
233,048 - EX31_RS01060 0.48 +0.1
233,074 + EX31_RS01060 0.51 -0.3
233,112 + EX31_RS01060 0.56 -1.7
233,112 + EX31_RS01060 0.56 +0.3
233,112 + EX31_RS01060 0.56 +0.3
233,113 - EX31_RS01060 0.56 -1.8
233,116 + EX31_RS01060 0.56 -1.3
233,116 + EX31_RS01060 0.56 -0.6
233,143 - EX31_RS01060 0.59 +0.5
233,172 + EX31_RS01060 0.63 -2.7
233,173 - EX31_RS01060 0.63 +0.9
233,173 - EX31_RS01060 0.63 -0.5
233,267 - EX31_RS01060 0.75 +1.3
233,332 + EX31_RS01060 0.83 +0.1
233,333 - EX31_RS01060 0.83 -0.9

Or see this region's nucleotide sequence