Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24835 and EX31_RS24840 are separated by 98 nucleotides EX31_RS24840 and EX31_RS24845 are separated by 43 nucleotides EX31_RS24845 and EX31_RS24850 are separated by 196 nucleotides
EX31_RS24835: EX31_RS24835 - ASCH domain-containing protein, at 744,042 to 744,434
_RS24835
EX31_RS24840: EX31_RS24840 - hypothetical protein, at 744,533 to 745,183
_RS24840
EX31_RS24845: EX31_RS24845 - YebV family protein, at 745,227 to 745,469
_RS24845
EX31_RS24850: EX31_RS24850 - diguanylate cyclase, at 745,666 to 747,387
_RS24850
Position (kb) 745
746 Strain fitness (log2 ratio) -2
-1
0
1
2 at 744.227 kb on + strand, within EX31_RS24835 at 744.390 kb on - strand, within EX31_RS24835 at 744.400 kb on + strand at 744.400 kb on + strand at 744.469 kb on + strand at 744.470 kb on - strand at 744.487 kb on + strand at 744.488 kb on - strand at 744.488 kb on - strand at 744.488 kb on - strand at 744.488 kb on - strand at 744.488 kb on - strand at 744.489 kb on + strand at 744.489 kb on + strand at 744.489 kb on + strand at 744.489 kb on + strand at 744.490 kb on - strand at 744.490 kb on - strand at 744.527 kb on + strand at 744.582 kb on + strand at 744.583 kb on - strand at 744.588 kb on - strand at 744.663 kb on + strand, within EX31_RS24840 at 744.663 kb on + strand, within EX31_RS24840 at 744.784 kb on + strand, within EX31_RS24840 at 744.785 kb on - strand, within EX31_RS24840 at 744.810 kb on - strand, within EX31_RS24840 at 744.818 kb on + strand, within EX31_RS24840 at 744.818 kb on + strand, within EX31_RS24840 at 744.819 kb on - strand, within EX31_RS24840 at 744.841 kb on + strand, within EX31_RS24840 at 744.872 kb on + strand, within EX31_RS24840 at 744.872 kb on + strand, within EX31_RS24840 at 744.872 kb on + strand, within EX31_RS24840 at 744.907 kb on + strand, within EX31_RS24840 at 745.073 kb on - strand, within EX31_RS24840 at 745.090 kb on + strand, within EX31_RS24840 at 745.091 kb on - strand, within EX31_RS24840 at 745.268 kb on - strand, within EX31_RS24845 at 745.268 kb on - strand, within EX31_RS24845 at 745.280 kb on - strand, within EX31_RS24845 at 745.350 kb on - strand, within EX31_RS24845 at 745.350 kb on - strand, within EX31_RS24845 at 745.350 kb on - strand, within EX31_RS24845 at 745.443 kb on - strand, within EX31_RS24845 at 745.443 kb on - strand, within EX31_RS24845 at 745.443 kb on - strand, within EX31_RS24845 at 745.452 kb on + strand at 745.453 kb on - strand at 745.453 kb on - strand at 745.518 kb on - strand at 745.518 kb on - strand at 745.537 kb on + strand at 745.537 kb on + strand at 745.538 kb on - strand at 745.538 kb on - strand at 745.538 kb on - strand at 745.539 kb on + strand at 745.539 kb on + strand at 745.539 kb on + strand at 745.539 kb on + strand at 745.540 kb on - strand at 745.540 kb on - strand at 745.540 kb on - strand at 745.540 kb on - strand at 745.591 kb on - strand at 745.657 kb on + strand at 745.658 kb on - strand at 745.658 kb on - strand at 745.658 kb on - strand at 745.668 kb on - strand at 745.737 kb on - strand at 745.737 kb on - strand at 745.803 kb on + strand at 745.803 kb on + strand at 745.803 kb on + strand at 745.804 kb on - strand at 745.805 kb on + strand at 745.805 kb on + strand at 745.806 kb on - strand at 745.806 kb on - strand at 745.806 kb on - strand at 745.806 kb on - strand at 745.806 kb on - strand at 745.806 kb on - strand at 745.806 kb on - strand at 745.806 kb on - strand at 745.806 kb on - strand at 745.887 kb on + strand, within EX31_RS24850 at 745.890 kb on + strand, within EX31_RS24850 at 746.007 kb on + strand, within EX31_RS24850 at 746.008 kb on - strand, within EX31_RS24850 at 746.076 kb on - strand, within EX31_RS24850 at 746.076 kb on - strand, within EX31_RS24850 at 746.130 kb on + strand, within EX31_RS24850 at 746.130 kb on + strand, within EX31_RS24850 at 746.131 kb on - strand, within EX31_RS24850 at 746.131 kb on - strand, within EX31_RS24850 at 746.131 kb on - strand, within EX31_RS24850 at 746.131 kb on - strand, within EX31_RS24850 at 746.132 kb on + strand, within EX31_RS24850 at 746.132 kb on + strand, within EX31_RS24850 at 746.133 kb on - strand, within EX31_RS24850 at 746.133 kb on - strand, within EX31_RS24850 at 746.251 kb on - strand, within EX31_RS24850 at 746.310 kb on - strand, within EX31_RS24850 at 746.310 kb on - strand, within EX31_RS24850 at 746.353 kb on + strand, within EX31_RS24850 at 746.420 kb on - strand, within EX31_RS24850 at 746.448 kb on + strand, within EX31_RS24850 at 746.448 kb on + strand, within EX31_RS24850 at 746.448 kb on + strand, within EX31_RS24850 at 746.449 kb on - strand, within EX31_RS24850 at 746.449 kb on - strand, within EX31_RS24850 at 746.463 kb on + strand, within EX31_RS24850 at 746.464 kb on - strand, within EX31_RS24850 at 746.464 kb on - strand, within EX31_RS24850
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 744,227 + EX31_RS24835 0.47 +0.9 744,390 - EX31_RS24835 0.89 +1.3 744,400 + +0.6 744,400 + +1.3 744,469 + +0.1 744,470 - +0.3 744,487 + -0.7 744,488 - -1.4 744,488 - -1.4 744,488 - -0.9 744,488 - +0.0 744,488 - +1.4 744,489 + -0.2 744,489 + -0.1 744,489 + +0.3 744,489 + -0.5 744,490 - +0.0 744,490 - -1.1 744,527 + -0.5 744,582 + +1.0 744,583 - -0.7 744,588 - +0.4 744,663 + EX31_RS24840 0.20 -0.1 744,663 + EX31_RS24840 0.20 -0.0 744,784 + EX31_RS24840 0.39 +0.8 744,785 - EX31_RS24840 0.39 +0.6 744,810 - EX31_RS24840 0.43 -0.4 744,818 + EX31_RS24840 0.44 +0.2 744,818 + EX31_RS24840 0.44 -0.0 744,819 - EX31_RS24840 0.44 +0.4 744,841 + EX31_RS24840 0.47 -0.8 744,872 + EX31_RS24840 0.52 -0.7 744,872 + EX31_RS24840 0.52 -0.6 744,872 + EX31_RS24840 0.52 -0.8 744,907 + EX31_RS24840 0.57 +0.2 745,073 - EX31_RS24840 0.83 -0.2 745,090 + EX31_RS24840 0.86 +1.5 745,091 - EX31_RS24840 0.86 +0.6 745,268 - EX31_RS24845 0.17 -0.3 745,268 - EX31_RS24845 0.17 -1.2 745,280 - EX31_RS24845 0.22 +0.5 745,350 - EX31_RS24845 0.51 -0.4 745,350 - EX31_RS24845 0.51 -1.7 745,350 - EX31_RS24845 0.51 -1.3 745,443 - EX31_RS24845 0.89 -0.1 745,443 - EX31_RS24845 0.89 -1.7 745,443 - EX31_RS24845 0.89 -0.3 745,452 + -2.1 745,453 - +0.9 745,453 - -0.4 745,518 - +0.4 745,518 - -0.3 745,537 + +0.6 745,537 + +0.4 745,538 - +0.6 745,538 - +0.1 745,538 - -0.1 745,539 + +1.0 745,539 + -0.9 745,539 + +0.2 745,539 + +0.1 745,540 - +1.5 745,540 - +0.3 745,540 - +0.6 745,540 - -1.5 745,591 - +0.2 745,657 + -0.7 745,658 - -0.6 745,658 - +0.3 745,658 - -0.1 745,668 - -0.7 745,737 - +1.7 745,737 - -0.1 745,803 + +0.9 745,803 + -0.4 745,803 + +1.0 745,804 - +0.6 745,805 + +0.3 745,805 + +2.1 745,806 - -0.1 745,806 - +0.1 745,806 - +0.0 745,806 - -0.8 745,806 - +0.0 745,806 - -1.0 745,806 - -0.6 745,806 - +0.6 745,806 - +1.1 745,887 + EX31_RS24850 0.13 -0.8 745,890 + EX31_RS24850 0.13 +0.6 746,007 + EX31_RS24850 0.20 +1.7 746,008 - EX31_RS24850 0.20 +0.2 746,076 - EX31_RS24850 0.24 -0.2 746,076 - EX31_RS24850 0.24 +0.5 746,130 + EX31_RS24850 0.27 +0.9 746,130 + EX31_RS24850 0.27 -0.3 746,131 - EX31_RS24850 0.27 +0.4 746,131 - EX31_RS24850 0.27 +2.2 746,131 - EX31_RS24850 0.27 +0.2 746,131 - EX31_RS24850 0.27 +1.3 746,132 + EX31_RS24850 0.27 -0.2 746,132 + EX31_RS24850 0.27 -1.0 746,133 - EX31_RS24850 0.27 +0.6 746,133 - EX31_RS24850 0.27 +0.5 746,251 - EX31_RS24850 0.34 +0.1 746,310 - EX31_RS24850 0.37 +0.4 746,310 - EX31_RS24850 0.37 +0.8 746,353 + EX31_RS24850 0.40 +2.0 746,420 - EX31_RS24850 0.44 +0.6 746,448 + EX31_RS24850 0.45 -0.9 746,448 + EX31_RS24850 0.45 +0.5 746,448 + EX31_RS24850 0.45 +0.2 746,449 - EX31_RS24850 0.45 +0.7 746,449 - EX31_RS24850 0.45 -0.5 746,463 + EX31_RS24850 0.46 +0.9 746,464 - EX31_RS24850 0.46 +0.2 746,464 - EX31_RS24850 0.46 +1.5
Or see this region's nucleotide sequence