Strain Fitness in Rahnella sp. WP5 around EX31_RS14110

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14105 and EX31_RS14110 are separated by 78 nucleotidesEX31_RS14110 and EX31_RS14115 are separated by 152 nucleotidesEX31_RS14115 and EX31_RS14120 are separated by 189 nucleotides EX31_RS14105: EX31_RS14105 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 85,342 to 86,178 _RS14105 EX31_RS14110: EX31_RS14110 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 86,257 to 87,018 _RS14110 EX31_RS14115: EX31_RS14115 - metal-dependent hydrolase, at 87,171 to 87,728 _RS14115 EX31_RS14120: EX31_RS14120 - L-cystine transporter, at 87,918 to 89,309 _RS14120 Position (kb) 86 87 88Strain fitness (log2 ratio) -2 -1 0 1 2at 85.264 kb on + strandat 85.264 kb on + strandat 85.264 kb on + strandat 85.294 kb on + strandat 85.295 kb on - strandat 85.359 kb on + strandat 85.444 kb on + strand, within EX31_RS14105at 85.444 kb on + strand, within EX31_RS14105at 85.445 kb on - strand, within EX31_RS14105at 85.445 kb on - strand, within EX31_RS14105at 85.445 kb on - strand, within EX31_RS14105at 85.445 kb on - strand, within EX31_RS14105at 85.447 kb on - strand, within EX31_RS14105at 85.447 kb on - strand, within EX31_RS14105at 85.456 kb on + strand, within EX31_RS14105at 85.456 kb on + strand, within EX31_RS14105at 85.456 kb on + strand, within EX31_RS14105at 85.456 kb on + strand, within EX31_RS14105at 85.456 kb on + strand, within EX31_RS14105at 85.457 kb on - strand, within EX31_RS14105at 85.621 kb on - strand, within EX31_RS14105at 85.627 kb on + strand, within EX31_RS14105at 85.628 kb on - strand, within EX31_RS14105at 85.654 kb on + strand, within EX31_RS14105at 85.654 kb on + strand, within EX31_RS14105at 85.654 kb on + strand, within EX31_RS14105at 85.655 kb on - strand, within EX31_RS14105at 85.655 kb on - strand, within EX31_RS14105at 85.655 kb on - strand, within EX31_RS14105at 85.723 kb on + strand, within EX31_RS14105at 85.723 kb on + strand, within EX31_RS14105at 85.723 kb on + strand, within EX31_RS14105at 85.723 kb on + strand, within EX31_RS14105at 85.724 kb on - strand, within EX31_RS14105at 85.724 kb on - strand, within EX31_RS14105at 85.833 kb on + strand, within EX31_RS14105at 85.914 kb on + strand, within EX31_RS14105at 85.914 kb on + strand, within EX31_RS14105at 85.915 kb on - strand, within EX31_RS14105at 85.954 kb on + strand, within EX31_RS14105at 85.968 kb on + strand, within EX31_RS14105at 85.968 kb on + strand, within EX31_RS14105at 85.968 kb on + strand, within EX31_RS14105at 86.061 kb on + strand, within EX31_RS14105at 86.061 kb on + strand, within EX31_RS14105at 86.062 kb on - strand, within EX31_RS14105at 86.062 kb on - strand, within EX31_RS14105at 86.099 kb on - strandat 86.099 kb on - strandat 86.100 kb on + strandat 86.101 kb on - strandat 86.101 kb on - strandat 86.115 kb on + strandat 86.135 kb on + strandat 86.256 kb on + strandat 86.279 kb on + strandat 86.365 kb on - strand, within EX31_RS14110at 86.420 kb on + strand, within EX31_RS14110at 86.421 kb on - strand, within EX31_RS14110at 86.512 kb on - strand, within EX31_RS14110at 86.622 kb on + strand, within EX31_RS14110at 86.622 kb on + strand, within EX31_RS14110at 86.623 kb on - strand, within EX31_RS14110at 86.623 kb on - strand, within EX31_RS14110at 86.677 kb on - strand, within EX31_RS14110at 86.682 kb on + strand, within EX31_RS14110at 86.682 kb on + strand, within EX31_RS14110at 86.683 kb on - strand, within EX31_RS14110at 86.683 kb on - strand, within EX31_RS14110at 86.691 kb on + strand, within EX31_RS14110at 86.691 kb on + strand, within EX31_RS14110at 86.692 kb on - strand, within EX31_RS14110at 86.729 kb on - strand, within EX31_RS14110at 86.731 kb on - strand, within EX31_RS14110at 86.750 kb on + strand, within EX31_RS14110at 86.750 kb on + strand, within EX31_RS14110at 86.793 kb on + strand, within EX31_RS14110at 86.793 kb on + strand, within EX31_RS14110at 86.794 kb on - strand, within EX31_RS14110at 86.824 kb on + strand, within EX31_RS14110at 86.825 kb on - strand, within EX31_RS14110at 86.826 kb on + strand, within EX31_RS14110at 86.827 kb on - strand, within EX31_RS14110at 86.968 kb on + strandat 87.221 kb on + strandat 87.291 kb on - strand, within EX31_RS14115at 87.344 kb on + strand, within EX31_RS14115at 87.345 kb on - strand, within EX31_RS14115at 87.345 kb on - strand, within EX31_RS14115at 87.521 kb on + strand, within EX31_RS14115at 87.521 kb on + strand, within EX31_RS14115at 87.522 kb on - strand, within EX31_RS14115at 87.522 kb on - strand, within EX31_RS14115at 87.603 kb on - strand, within EX31_RS14115at 87.629 kb on + strand, within EX31_RS14115at 87.741 kb on - strandat 87.764 kb on + strandat 87.807 kb on - strandat 87.810 kb on + strandat 87.811 kb on - strandat 87.811 kb on - strandat 87.899 kb on + strandat 87.901 kb on + strandat 87.943 kb on + strandat 87.943 kb on + strandat 87.944 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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85,264 + -1.1
85,264 + +1.4
85,264 + -1.6
85,294 + +0.2
85,295 - +0.3
85,359 + +0.2
85,444 + EX31_RS14105 0.12 -0.4
85,444 + EX31_RS14105 0.12 -0.7
85,445 - EX31_RS14105 0.12 +0.4
85,445 - EX31_RS14105 0.12 -0.3
85,445 - EX31_RS14105 0.12 -1.0
85,445 - EX31_RS14105 0.12 +0.1
85,447 - EX31_RS14105 0.13 +0.3
85,447 - EX31_RS14105 0.13 +1.4
85,456 + EX31_RS14105 0.14 -1.8
85,456 + EX31_RS14105 0.14 +0.5
85,456 + EX31_RS14105 0.14 -0.2
85,456 + EX31_RS14105 0.14 -2.2
85,456 + EX31_RS14105 0.14 -0.4
85,457 - EX31_RS14105 0.14 +0.4
85,621 - EX31_RS14105 0.33 -0.8
85,627 + EX31_RS14105 0.34 +0.1
85,628 - EX31_RS14105 0.34 +0.0
85,654 + EX31_RS14105 0.37 +0.7
85,654 + EX31_RS14105 0.37 +2.0
85,654 + EX31_RS14105 0.37 +0.3
85,655 - EX31_RS14105 0.37 +0.1
85,655 - EX31_RS14105 0.37 +0.5
85,655 - EX31_RS14105 0.37 +0.4
85,723 + EX31_RS14105 0.46 -1.4
85,723 + EX31_RS14105 0.46 -1.2
85,723 + EX31_RS14105 0.46 +0.6
85,723 + EX31_RS14105 0.46 +1.2
85,724 - EX31_RS14105 0.46 -0.1
85,724 - EX31_RS14105 0.46 -0.3
85,833 + EX31_RS14105 0.59 -0.4
85,914 + EX31_RS14105 0.68 -0.6
85,914 + EX31_RS14105 0.68 -1.1
85,915 - EX31_RS14105 0.68 +0.7
85,954 + EX31_RS14105 0.73 +0.3
85,968 + EX31_RS14105 0.75 +0.0
85,968 + EX31_RS14105 0.75 +0.1
85,968 + EX31_RS14105 0.75 -0.9
86,061 + EX31_RS14105 0.86 -0.1
86,061 + EX31_RS14105 0.86 +0.2
86,062 - EX31_RS14105 0.86 -1.7
86,062 - EX31_RS14105 0.86 +0.2
86,099 - +0.2
86,099 - +0.4
86,100 + +0.1
86,101 - +0.3
86,101 - +2.1
86,115 + -0.1
86,135 + +0.6
86,256 + -0.3
86,279 + -0.1
86,365 - EX31_RS14110 0.14 -1.7
86,420 + EX31_RS14110 0.21 -1.2
86,421 - EX31_RS14110 0.22 +0.0
86,512 - EX31_RS14110 0.33 -1.2
86,622 + EX31_RS14110 0.48 -0.3
86,622 + EX31_RS14110 0.48 -0.2
86,623 - EX31_RS14110 0.48 -1.2
86,623 - EX31_RS14110 0.48 -1.3
86,677 - EX31_RS14110 0.55 -0.2
86,682 + EX31_RS14110 0.56 -1.9
86,682 + EX31_RS14110 0.56 -0.9
86,683 - EX31_RS14110 0.56 -0.6
86,683 - EX31_RS14110 0.56 +0.1
86,691 + EX31_RS14110 0.57 +0.1
86,691 + EX31_RS14110 0.57 +0.5
86,692 - EX31_RS14110 0.57 -0.1
86,729 - EX31_RS14110 0.62 +1.4
86,731 - EX31_RS14110 0.62 -0.8
86,750 + EX31_RS14110 0.65 -0.1
86,750 + EX31_RS14110 0.65 -0.1
86,793 + EX31_RS14110 0.70 -0.6
86,793 + EX31_RS14110 0.70 -0.3
86,794 - EX31_RS14110 0.70 -0.1
86,824 + EX31_RS14110 0.74 -1.7
86,825 - EX31_RS14110 0.75 -0.6
86,826 + EX31_RS14110 0.75 +1.5
86,827 - EX31_RS14110 0.75 +0.4
86,968 + +1.1
87,221 + -0.8
87,291 - EX31_RS14115 0.22 -0.2
87,344 + EX31_RS14115 0.31 -0.0
87,345 - EX31_RS14115 0.31 -1.7
87,345 - EX31_RS14115 0.31 +0.6
87,521 + EX31_RS14115 0.63 +0.5
87,521 + EX31_RS14115 0.63 +1.1
87,522 - EX31_RS14115 0.63 -0.1
87,522 - EX31_RS14115 0.63 +0.4
87,603 - EX31_RS14115 0.77 +1.2
87,629 + EX31_RS14115 0.82 +0.6
87,741 - +1.0
87,764 + +1.2
87,807 - -0.1
87,810 + +0.4
87,811 - -0.1
87,811 - -0.8
87,899 + -0.8
87,901 + -0.7
87,943 + -0.7
87,943 + -0.6
87,944 - -0.1

Or see this region's nucleotide sequence