Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05810 and EX31_RS05815 are separated by 144 nucleotides EX31_RS05815 and EX31_RS05820 are separated by 93 nucleotides EX31_RS05820 and EX31_RS05825 are separated by 136 nucleotides
EX31_RS05810: EX31_RS05810 - PLP-dependent aminotransferase family protein, at 315,005 to 316,498
_RS05810
EX31_RS05815: EX31_RS05815 - LysE family translocator, at 316,643 to 317,251
_RS05815
EX31_RS05820: EX31_RS05820 - MltR family transcriptional regulator, at 317,345 to 317,893
_RS05820
EX31_RS05825: EX31_RS05825 - mannitol-1-phosphate 5-dehydrogenase, at 318,030 to 319,178
_RS05825
Position (kb) 316
317
318 Strain fitness (log2 ratio) -2
-1
0
1 at 315.698 kb on - strand, within EX31_RS05810 at 315.698 kb on - strand, within EX31_RS05810 at 315.698 kb on - strand, within EX31_RS05810 at 315.698 kb on - strand, within EX31_RS05810 at 315.861 kb on + strand, within EX31_RS05810 at 315.862 kb on - strand, within EX31_RS05810 at 315.905 kb on - strand, within EX31_RS05810 at 315.934 kb on + strand, within EX31_RS05810 at 315.934 kb on + strand, within EX31_RS05810 at 315.934 kb on + strand, within EX31_RS05810 at 315.934 kb on + strand, within EX31_RS05810 at 315.934 kb on + strand, within EX31_RS05810 at 315.935 kb on - strand, within EX31_RS05810 at 315.935 kb on - strand, within EX31_RS05810 at 315.935 kb on - strand, within EX31_RS05810 at 315.935 kb on - strand, within EX31_RS05810 at 315.935 kb on - strand, within EX31_RS05810 at 315.946 kb on + strand, within EX31_RS05810 at 315.946 kb on + strand, within EX31_RS05810 at 315.946 kb on + strand, within EX31_RS05810 at 315.946 kb on + strand, within EX31_RS05810 at 315.947 kb on - strand, within EX31_RS05810 at 315.947 kb on - strand, within EX31_RS05810 at 315.947 kb on - strand, within EX31_RS05810 at 316.014 kb on - strand, within EX31_RS05810 at 316.042 kb on - strand, within EX31_RS05810 at 316.084 kb on + strand, within EX31_RS05810 at 316.084 kb on + strand, within EX31_RS05810 at 316.084 kb on + strand, within EX31_RS05810 at 316.084 kb on + strand, within EX31_RS05810 at 316.085 kb on - strand, within EX31_RS05810 at 316.142 kb on + strand, within EX31_RS05810 at 316.142 kb on + strand, within EX31_RS05810 at 316.143 kb on - strand, within EX31_RS05810 at 316.143 kb on - strand, within EX31_RS05810 at 316.152 kb on + strand, within EX31_RS05810 at 316.152 kb on + strand, within EX31_RS05810 at 316.152 kb on + strand, within EX31_RS05810 at 316.152 kb on + strand, within EX31_RS05810 at 316.152 kb on + strand, within EX31_RS05810 at 316.152 kb on + strand, within EX31_RS05810 at 316.153 kb on - strand, within EX31_RS05810 at 316.281 kb on + strand, within EX31_RS05810 at 316.281 kb on + strand, within EX31_RS05810 at 316.281 kb on + strand, within EX31_RS05810 at 316.281 kb on + strand, within EX31_RS05810 at 316.281 kb on + strand, within EX31_RS05810 at 316.282 kb on - strand, within EX31_RS05810 at 316.282 kb on - strand, within EX31_RS05810 at 316.357 kb on + strand at 316.462 kb on + strand at 316.462 kb on + strand at 316.462 kb on + strand at 316.462 kb on + strand at 316.462 kb on + strand at 316.463 kb on - strand at 316.463 kb on - strand at 316.463 kb on - strand at 316.463 kb on - strand at 316.463 kb on - strand at 316.464 kb on + strand at 316.464 kb on + strand at 316.490 kb on - strand at 316.539 kb on + strand at 316.539 kb on + strand at 316.539 kb on + strand at 316.557 kb on - strand at 316.567 kb on + strand at 316.568 kb on - strand at 316.568 kb on - strand at 316.602 kb on + strand at 316.602 kb on + strand at 316.603 kb on - strand at 316.667 kb on + strand at 316.667 kb on + strand at 316.667 kb on + strand at 316.667 kb on + strand at 316.667 kb on + strand at 316.667 kb on + strand at 316.668 kb on - strand at 316.668 kb on - strand at 316.668 kb on - strand at 316.668 kb on - strand at 316.668 kb on - strand at 316.668 kb on - strand at 316.668 kb on - strand at 316.668 kb on - strand at 316.668 kb on - strand at 316.668 kb on - strand at 316.687 kb on + strand at 316.687 kb on + strand at 316.687 kb on + strand at 316.687 kb on + strand at 316.687 kb on + strand at 316.688 kb on - strand at 316.771 kb on + strand, within EX31_RS05815 at 316.772 kb on - strand, within EX31_RS05815 at 316.877 kb on + strand, within EX31_RS05815 at 316.877 kb on + strand, within EX31_RS05815 at 316.877 kb on + strand, within EX31_RS05815 at 316.877 kb on + strand, within EX31_RS05815 at 316.877 kb on + strand, within EX31_RS05815 at 316.878 kb on - strand, within EX31_RS05815 at 316.878 kb on - strand, within EX31_RS05815 at 316.878 kb on - strand, within EX31_RS05815 at 316.878 kb on - strand, within EX31_RS05815 at 316.878 kb on - strand, within EX31_RS05815 at 316.957 kb on + strand, within EX31_RS05815 at 316.957 kb on + strand, within EX31_RS05815 at 316.958 kb on - strand, within EX31_RS05815 at 316.958 kb on - strand, within EX31_RS05815 at 316.968 kb on + strand, within EX31_RS05815 at 316.968 kb on + strand, within EX31_RS05815 at 316.968 kb on + strand, within EX31_RS05815 at 316.969 kb on - strand, within EX31_RS05815 at 317.071 kb on + strand, within EX31_RS05815 at 317.133 kb on + strand, within EX31_RS05815 at 317.134 kb on - strand, within EX31_RS05815 at 317.134 kb on - strand, within EX31_RS05815 at 317.134 kb on - strand, within EX31_RS05815 at 317.145 kb on + strand, within EX31_RS05815 at 317.145 kb on + strand, within EX31_RS05815 at 317.145 kb on + strand, within EX31_RS05815 at 317.145 kb on + strand, within EX31_RS05815 at 317.146 kb on - strand, within EX31_RS05815 at 317.250 kb on - strand at 317.250 kb on - strand at 317.258 kb on + strand at 317.259 kb on - strand at 317.286 kb on - strand at 317.286 kb on - strand at 317.286 kb on - strand at 317.286 kb on - strand at 317.286 kb on - strand at 317.333 kb on + strand at 317.346 kb on + strand at 317.347 kb on - strand at 317.347 kb on - strand at 317.383 kb on + strand at 317.383 kb on + strand at 317.384 kb on - strand at 317.446 kb on - strand, within EX31_RS05820 at 317.577 kb on + strand, within EX31_RS05820 at 317.578 kb on - strand, within EX31_RS05820 at 317.592 kb on + strand, within EX31_RS05820 at 317.592 kb on + strand, within EX31_RS05820 at 317.593 kb on - strand, within EX31_RS05820 at 317.621 kb on + strand, within EX31_RS05820 at 317.621 kb on + strand, within EX31_RS05820 at 317.621 kb on + strand, within EX31_RS05820 at 317.668 kb on - strand, within EX31_RS05820 at 317.684 kb on + strand, within EX31_RS05820 at 317.684 kb on + strand, within EX31_RS05820 at 317.685 kb on - strand, within EX31_RS05820 at 317.685 kb on - strand, within EX31_RS05820 at 317.685 kb on - strand, within EX31_RS05820 at 317.685 kb on - strand, within EX31_RS05820 at 317.685 kb on - strand, within EX31_RS05820 at 317.685 kb on - strand, within EX31_RS05820 at 317.685 kb on - strand, within EX31_RS05820 at 317.736 kb on + strand, within EX31_RS05820 at 317.736 kb on + strand, within EX31_RS05820 at 317.736 kb on + strand, within EX31_RS05820 at 317.736 kb on + strand, within EX31_RS05820 at 317.737 kb on - strand, within EX31_RS05820 at 317.737 kb on - strand, within EX31_RS05820 at 317.737 kb on - strand, within EX31_RS05820 at 317.737 kb on - strand, within EX31_RS05820 at 317.737 kb on - strand, within EX31_RS05820 at 317.737 kb on - strand, within EX31_RS05820 at 317.748 kb on + strand, within EX31_RS05820 at 317.749 kb on - strand, within EX31_RS05820 at 317.848 kb on + strand at 317.849 kb on - strand at 317.849 kb on - strand at 317.862 kb on - strand at 317.862 kb on - strand at 317.900 kb on + strand at 317.900 kb on + strand at 317.900 kb on + strand at 317.900 kb on + strand at 317.901 kb on - strand at 317.901 kb on - strand at 317.901 kb on - strand at 317.901 kb on - strand at 317.901 kb on - strand at 318.028 kb on + strand at 318.029 kb on - strand at 318.029 kb on - strand at 318.029 kb on - strand at 318.029 kb on - strand at 318.047 kb on - strand at 318.047 kb on - strand at 318.047 kb on - strand at 318.153 kb on - strand, within EX31_RS05825 at 318.178 kb on + strand, within EX31_RS05825
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 315,698 - EX31_RS05810 0.46 +0.0 315,698 - EX31_RS05810 0.46 -0.4 315,698 - EX31_RS05810 0.46 -0.1 315,698 - EX31_RS05810 0.46 +0.6 315,861 + EX31_RS05810 0.57 +0.3 315,862 - EX31_RS05810 0.57 -0.3 315,905 - EX31_RS05810 0.60 +0.8 315,934 + EX31_RS05810 0.62 +0.5 315,934 + EX31_RS05810 0.62 +0.4 315,934 + EX31_RS05810 0.62 -0.6 315,934 + EX31_RS05810 0.62 +0.2 315,934 + EX31_RS05810 0.62 -1.4 315,935 - EX31_RS05810 0.62 -1.0 315,935 - EX31_RS05810 0.62 +0.4 315,935 - EX31_RS05810 0.62 -1.0 315,935 - EX31_RS05810 0.62 +0.7 315,935 - EX31_RS05810 0.62 -0.8 315,946 + EX31_RS05810 0.63 +0.3 315,946 + EX31_RS05810 0.63 +0.3 315,946 + EX31_RS05810 0.63 -0.7 315,946 + EX31_RS05810 0.63 -1.3 315,947 - EX31_RS05810 0.63 -0.3 315,947 - EX31_RS05810 0.63 +0.3 315,947 - EX31_RS05810 0.63 +0.4 316,014 - EX31_RS05810 0.68 -0.4 316,042 - EX31_RS05810 0.69 -0.7 316,084 + EX31_RS05810 0.72 +0.1 316,084 + EX31_RS05810 0.72 +0.3 316,084 + EX31_RS05810 0.72 +0.4 316,084 + EX31_RS05810 0.72 -0.2 316,085 - EX31_RS05810 0.72 -0.2 316,142 + EX31_RS05810 0.76 -1.6 316,142 + EX31_RS05810 0.76 -0.6 316,143 - EX31_RS05810 0.76 -0.0 316,143 - EX31_RS05810 0.76 +0.2 316,152 + EX31_RS05810 0.77 -0.4 316,152 + EX31_RS05810 0.77 -0.1 316,152 + EX31_RS05810 0.77 +0.0 316,152 + EX31_RS05810 0.77 -0.6 316,152 + EX31_RS05810 0.77 +0.5 316,152 + EX31_RS05810 0.77 +1.3 316,153 - EX31_RS05810 0.77 +0.1 316,281 + EX31_RS05810 0.85 +0.5 316,281 + EX31_RS05810 0.85 +0.1 316,281 + EX31_RS05810 0.85 -0.2 316,281 + EX31_RS05810 0.85 +0.5 316,281 + EX31_RS05810 0.85 +0.1 316,282 - EX31_RS05810 0.85 -0.7 316,282 - EX31_RS05810 0.85 +0.7 316,357 + +0.5 316,462 + -0.1 316,462 + -0.5 316,462 + -0.1 316,462 + +0.0 316,462 + +0.5 316,463 - -1.3 316,463 - +0.5 316,463 - +0.1 316,463 - +0.6 316,463 - +0.4 316,464 + -0.9 316,464 + +0.9 316,490 - -0.9 316,539 + +0.8 316,539 + -0.5 316,539 + -0.5 316,557 - -0.4 316,567 + -0.2 316,568 - -0.1 316,568 - -0.3 316,602 + -0.1 316,602 + -0.4 316,603 - +0.1 316,667 + +0.6 316,667 + -0.3 316,667 + +0.4 316,667 + +0.1 316,667 + -0.0 316,667 + -1.0 316,668 - -0.2 316,668 - +1.3 316,668 - +0.2 316,668 - +1.0 316,668 - +0.2 316,668 - -0.9 316,668 - -0.3 316,668 - -0.4 316,668 - -0.1 316,668 - +0.8 316,687 + +0.1 316,687 + +0.2 316,687 + +0.7 316,687 + -0.4 316,687 + +0.6 316,688 - +0.6 316,771 + EX31_RS05815 0.21 -0.1 316,772 - EX31_RS05815 0.21 -0.5 316,877 + EX31_RS05815 0.38 -0.4 316,877 + EX31_RS05815 0.38 -0.2 316,877 + EX31_RS05815 0.38 +0.4 316,877 + EX31_RS05815 0.38 -0.4 316,877 + EX31_RS05815 0.38 -0.1 316,878 - EX31_RS05815 0.39 -0.4 316,878 - EX31_RS05815 0.39 -0.5 316,878 - EX31_RS05815 0.39 -0.6 316,878 - EX31_RS05815 0.39 -1.1 316,878 - EX31_RS05815 0.39 -0.6 316,957 + EX31_RS05815 0.52 -0.1 316,957 + EX31_RS05815 0.52 -0.1 316,958 - EX31_RS05815 0.52 +0.1 316,958 - EX31_RS05815 0.52 -0.9 316,968 + EX31_RS05815 0.53 +0.8 316,968 + EX31_RS05815 0.53 +0.8 316,968 + EX31_RS05815 0.53 +0.2 316,969 - EX31_RS05815 0.54 +0.7 317,071 + EX31_RS05815 0.70 -0.4 317,133 + EX31_RS05815 0.80 -0.7 317,134 - EX31_RS05815 0.81 +0.3 317,134 - EX31_RS05815 0.81 -0.5 317,134 - EX31_RS05815 0.81 +0.4 317,145 + EX31_RS05815 0.82 -0.2 317,145 + EX31_RS05815 0.82 +0.4 317,145 + EX31_RS05815 0.82 +0.2 317,145 + EX31_RS05815 0.82 -1.2 317,146 - EX31_RS05815 0.83 -0.2 317,250 - +0.4 317,250 - +0.4 317,258 + -1.4 317,259 - -0.3 317,286 - +1.2 317,286 - -1.4 317,286 - -0.2 317,286 - +1.0 317,286 - +0.2 317,333 + -0.0 317,346 + -1.8 317,347 - +0.1 317,347 - -0.0 317,383 + -0.2 317,383 + +0.1 317,384 - +0.5 317,446 - EX31_RS05820 0.18 +0.2 317,577 + EX31_RS05820 0.42 -0.6 317,578 - EX31_RS05820 0.42 +0.1 317,592 + EX31_RS05820 0.45 +0.2 317,592 + EX31_RS05820 0.45 +0.9 317,593 - EX31_RS05820 0.45 +0.1 317,621 + EX31_RS05820 0.50 +1.5 317,621 + EX31_RS05820 0.50 -0.2 317,621 + EX31_RS05820 0.50 -0.7 317,668 - EX31_RS05820 0.59 -0.2 317,684 + EX31_RS05820 0.62 -0.4 317,684 + EX31_RS05820 0.62 -0.7 317,685 - EX31_RS05820 0.62 -0.6 317,685 - EX31_RS05820 0.62 +0.5 317,685 - EX31_RS05820 0.62 +0.5 317,685 - EX31_RS05820 0.62 +0.2 317,685 - EX31_RS05820 0.62 -0.4 317,685 - EX31_RS05820 0.62 -1.2 317,685 - EX31_RS05820 0.62 -0.4 317,736 + EX31_RS05820 0.71 -1.3 317,736 + EX31_RS05820 0.71 +0.2 317,736 + EX31_RS05820 0.71 +0.4 317,736 + EX31_RS05820 0.71 -0.2 317,737 - EX31_RS05820 0.71 -0.4 317,737 - EX31_RS05820 0.71 +0.2 317,737 - EX31_RS05820 0.71 +0.0 317,737 - EX31_RS05820 0.71 -1.3 317,737 - EX31_RS05820 0.71 +0.2 317,737 - EX31_RS05820 0.71 -0.4 317,748 + EX31_RS05820 0.73 -0.1 317,749 - EX31_RS05820 0.74 +1.0 317,848 + -0.1 317,849 - +0.2 317,849 - -0.1 317,862 - +0.1 317,862 - -0.4 317,900 + -0.2 317,900 + +0.0 317,900 + +0.8 317,900 + +1.1 317,901 - +0.2 317,901 - -0.1 317,901 - +0.0 317,901 - +1.7 317,901 - -0.1 318,028 + -0.6 318,029 - -0.0 318,029 - -0.4 318,029 - -0.2 318,029 - +0.5 318,047 - -0.4 318,047 - +0.1 318,047 - +1.6 318,153 - EX31_RS05825 0.11 -0.7 318,178 + EX31_RS05825 0.13 +1.7
Or see this region's nucleotide sequence