Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24595 and EX31_RS24600 are separated by 152 nucleotides EX31_RS24600 and EX31_RS24605 are separated by 294 nucleotides EX31_RS24605 and EX31_RS24610 are separated by 68 nucleotides EX31_RS24610 and EX31_RS24615 are separated by 141 nucleotides
EX31_RS24595: EX31_RS24595 - membrane protein, at 690,028 to 690,519
_RS24595
EX31_RS24600: EX31_RS24600 - hypothetical protein, at 690,672 to 690,905
_RS24600
EX31_RS24605: EX31_RS24605 - hypothetical protein, at 691,200 to 691,487
_RS24605
EX31_RS24610: EX31_RS24610 - hypothetical protein, at 691,556 to 691,771
_RS24610
EX31_RS24615: EX31_RS24615 - peptide ABC transporter substrate-binding protein, at 691,913 to 693,553
_RS24615
Position (kb) 691
692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 690.234 kb on + strand, within EX31_RS24595 at 690.259 kb on - strand, within EX31_RS24595 at 690.260 kb on + strand, within EX31_RS24595 at 690.260 kb on + strand, within EX31_RS24595 at 690.260 kb on + strand, within EX31_RS24595 at 690.260 kb on + strand, within EX31_RS24595 at 690.260 kb on + strand, within EX31_RS24595 at 690.260 kb on + strand, within EX31_RS24595 at 690.261 kb on - strand, within EX31_RS24595 at 690.261 kb on - strand, within EX31_RS24595 at 690.291 kb on + strand, within EX31_RS24595 at 690.292 kb on - strand, within EX31_RS24595 at 690.295 kb on + strand, within EX31_RS24595 at 690.431 kb on - strand, within EX31_RS24595 at 690.458 kb on + strand, within EX31_RS24595 at 690.459 kb on - strand, within EX31_RS24595 at 690.510 kb on - strand at 690.518 kb on - strand at 690.528 kb on + strand at 690.539 kb on + strand at 690.552 kb on - strand at 690.577 kb on - strand at 690.637 kb on + strand at 690.701 kb on + strand, within EX31_RS24600 at 690.728 kb on + strand, within EX31_RS24600 at 690.905 kb on + strand at 690.905 kb on + strand at 690.905 kb on + strand at 690.905 kb on + strand at 690.905 kb on + strand at 690.905 kb on + strand at 690.905 kb on + strand at 690.905 kb on + strand at 690.905 kb on + strand at 690.906 kb on - strand at 690.906 kb on - strand at 690.906 kb on - strand at 690.906 kb on - strand at 690.906 kb on - strand at 690.906 kb on - strand at 690.906 kb on - strand at 690.928 kb on + strand at 690.929 kb on - strand at 690.959 kb on + strand at 690.959 kb on + strand at 690.960 kb on - strand at 690.960 kb on - strand at 690.967 kb on + strand at 690.990 kb on + strand at 691.034 kb on + strand at 691.082 kb on + strand at 691.082 kb on + strand at 691.082 kb on + strand at 691.082 kb on + strand at 691.082 kb on + strand at 691.082 kb on + strand at 691.082 kb on + strand at 691.084 kb on + strand at 691.084 kb on + strand at 691.084 kb on + strand at 691.084 kb on + strand at 691.084 kb on + strand at 691.084 kb on + strand at 691.085 kb on - strand at 691.085 kb on - strand at 691.085 kb on - strand at 691.085 kb on - strand at 691.085 kb on - strand at 691.085 kb on - strand at 691.086 kb on + strand at 691.086 kb on + strand at 691.086 kb on + strand at 691.086 kb on + strand at 691.086 kb on + strand at 691.086 kb on + strand at 691.087 kb on - strand at 691.087 kb on - strand at 691.087 kb on - strand at 691.087 kb on - strand at 691.121 kb on + strand at 691.122 kb on - strand at 691.127 kb on + strand at 691.127 kb on + strand at 691.128 kb on - strand at 691.199 kb on + strand at 691.200 kb on - strand at 691.275 kb on + strand, within EX31_RS24605 at 691.275 kb on + strand, within EX31_RS24605 at 691.275 kb on + strand, within EX31_RS24605 at 691.275 kb on + strand, within EX31_RS24605 at 691.275 kb on + strand, within EX31_RS24605 at 691.275 kb on + strand, within EX31_RS24605 at 691.276 kb on - strand, within EX31_RS24605 at 691.312 kb on + strand, within EX31_RS24605 at 691.384 kb on - strand, within EX31_RS24605 at 691.394 kb on + strand, within EX31_RS24605 at 691.481 kb on + strand at 691.481 kb on + strand at 691.481 kb on + strand at 691.481 kb on + strand at 691.481 kb on + strand at 691.481 kb on + strand at 691.481 kb on + strand at 691.481 kb on + strand at 691.482 kb on - strand at 691.482 kb on - strand at 691.482 kb on - strand at 691.482 kb on - strand at 691.482 kb on - strand at 691.485 kb on + strand at 691.506 kb on + strand at 691.506 kb on + strand at 691.507 kb on - strand at 691.576 kb on + strand at 691.576 kb on + strand at 691.583 kb on - strand, within EX31_RS24610 at 691.583 kb on - strand, within EX31_RS24610 at 691.586 kb on - strand, within EX31_RS24610 at 691.603 kb on + strand, within EX31_RS24610 at 691.603 kb on + strand, within EX31_RS24610 at 691.650 kb on + strand, within EX31_RS24610 at 691.654 kb on + strand, within EX31_RS24610 at 691.699 kb on + strand, within EX31_RS24610 at 691.700 kb on - strand, within EX31_RS24610 at 691.794 kb on + strand at 691.798 kb on + strand at 691.798 kb on + strand at 691.835 kb on + strand at 691.836 kb on - strand at 691.922 kb on - strand at 691.925 kb on + strand at 691.925 kb on + strand at 691.926 kb on - strand at 691.926 kb on - strand at 691.929 kb on + strand at 691.929 kb on + strand at 691.929 kb on + strand at 691.929 kb on + strand at 691.930 kb on - strand at 691.944 kb on + strand at 691.944 kb on + strand at 691.945 kb on - strand at 691.945 kb on - strand at 691.945 kb on - strand at 691.951 kb on - strand at 691.951 kb on - strand at 691.983 kb on + strand at 691.984 kb on - strand at 691.984 kb on - strand at 691.984 kb on - strand at 691.984 kb on - strand at 692.011 kb on - strand at 692.011 kb on - strand at 692.011 kb on - strand at 692.016 kb on + strand at 692.102 kb on + strand, within EX31_RS24615 at 692.103 kb on - strand, within EX31_RS24615 at 692.204 kb on - strand, within EX31_RS24615 at 692.205 kb on + strand, within EX31_RS24615 at 692.206 kb on - strand, within EX31_RS24615 at 692.238 kb on + strand, within EX31_RS24615 at 692.238 kb on + strand, within EX31_RS24615 at 692.238 kb on + strand, within EX31_RS24615 at 692.238 kb on + strand, within EX31_RS24615 at 692.239 kb on - strand, within EX31_RS24615 at 692.239 kb on - strand, within EX31_RS24615 at 692.239 kb on - strand, within EX31_RS24615 at 692.239 kb on - strand, within EX31_RS24615 at 692.239 kb on - strand, within EX31_RS24615 at 692.239 kb on - strand, within EX31_RS24615 at 692.239 kb on - strand, within EX31_RS24615 at 692.239 kb on - strand, within EX31_RS24615 at 692.239 kb on - strand, within EX31_RS24615 at 692.239 kb on - strand, within EX31_RS24615 at 692.239 kb on - strand, within EX31_RS24615 at 692.239 kb on - strand, within EX31_RS24615 at 692.239 kb on - strand, within EX31_RS24615 at 692.369 kb on - strand, within EX31_RS24615 at 692.369 kb on - strand, within EX31_RS24615 at 692.370 kb on + strand, within EX31_RS24615 at 692.371 kb on - strand, within EX31_RS24615 at 692.371 kb on - strand, within EX31_RS24615 at 692.371 kb on - strand, within EX31_RS24615 at 692.431 kb on + strand, within EX31_RS24615 at 692.432 kb on - strand, within EX31_RS24615 at 692.473 kb on + strand, within EX31_RS24615 at 692.473 kb on + strand, within EX31_RS24615 at 692.474 kb on - strand, within EX31_RS24615
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 690,234 + EX31_RS24595 0.42 -2.9 690,259 - EX31_RS24595 0.47 +1.1 690,260 + EX31_RS24595 0.47 -0.3 690,260 + EX31_RS24595 0.47 +0.5 690,260 + EX31_RS24595 0.47 +0.1 690,260 + EX31_RS24595 0.47 +0.7 690,260 + EX31_RS24595 0.47 +1.0 690,260 + EX31_RS24595 0.47 -0.7 690,261 - EX31_RS24595 0.47 -0.3 690,261 - EX31_RS24595 0.47 +0.5 690,291 + EX31_RS24595 0.53 +0.7 690,292 - EX31_RS24595 0.54 -0.1 690,295 + EX31_RS24595 0.54 +0.8 690,431 - EX31_RS24595 0.82 -0.7 690,458 + EX31_RS24595 0.87 +0.0 690,459 - EX31_RS24595 0.88 +0.5 690,510 - -0.9 690,518 - -0.4 690,528 + -1.6 690,539 + -0.1 690,552 - -0.0 690,577 - +0.2 690,637 + +0.9 690,701 + EX31_RS24600 0.12 -0.8 690,728 + EX31_RS24600 0.24 -0.9 690,905 + +0.1 690,905 + +0.6 690,905 + +0.5 690,905 + +1.0 690,905 + +0.2 690,905 + -0.9 690,905 + +0.7 690,905 + -0.6 690,905 + -0.5 690,906 - -1.1 690,906 - +0.5 690,906 - -0.4 690,906 - -0.1 690,906 - +0.3 690,906 - +1.0 690,906 - -2.9 690,928 + +0.1 690,929 - -0.4 690,959 + -0.9 690,959 + -1.3 690,960 - +0.7 690,960 - -0.4 690,967 + +0.1 690,990 + +1.1 691,034 + +0.0 691,082 + -0.3 691,082 + -1.5 691,082 + -1.8 691,082 + +1.4 691,082 + -2.4 691,082 + +0.8 691,082 + +0.1 691,084 + +0.1 691,084 + +1.1 691,084 + -1.5 691,084 + -0.1 691,084 + +0.4 691,084 + -0.1 691,085 - -0.0 691,085 - +0.2 691,085 - -0.4 691,085 - +0.4 691,085 - +0.6 691,085 - -0.3 691,086 + +0.8 691,086 + +0.5 691,086 + -2.8 691,086 + +2.2 691,086 + -0.8 691,086 + +0.7 691,087 - +0.9 691,087 - +0.5 691,087 - +0.9 691,087 - -0.2 691,121 + +0.8 691,122 - +0.7 691,127 + -0.3 691,127 + +0.1 691,128 - -1.0 691,199 + +0.2 691,200 - +0.7 691,275 + EX31_RS24605 0.26 +1.4 691,275 + EX31_RS24605 0.26 +0.2 691,275 + EX31_RS24605 0.26 +2.5 691,275 + EX31_RS24605 0.26 +1.5 691,275 + EX31_RS24605 0.26 -1.2 691,275 + EX31_RS24605 0.26 +1.2 691,276 - EX31_RS24605 0.26 -0.2 691,312 + EX31_RS24605 0.39 +1.2 691,384 - EX31_RS24605 0.64 +1.6 691,394 + EX31_RS24605 0.67 +0.3 691,481 + +0.8 691,481 + +0.3 691,481 + +0.4 691,481 + -0.1 691,481 + -0.7 691,481 + +0.4 691,481 + +0.2 691,481 + +0.0 691,482 - -0.7 691,482 - -0.3 691,482 - -0.4 691,482 - +0.9 691,482 - +0.1 691,485 + -1.2 691,506 + -1.1 691,506 + +0.1 691,507 - -0.4 691,576 + -0.8 691,576 + +0.2 691,583 - EX31_RS24610 0.12 +0.1 691,583 - EX31_RS24610 0.12 -0.9 691,586 - EX31_RS24610 0.14 +0.8 691,603 + EX31_RS24610 0.22 +0.0 691,603 + EX31_RS24610 0.22 +0.1 691,650 + EX31_RS24610 0.44 +0.8 691,654 + EX31_RS24610 0.45 +0.3 691,699 + EX31_RS24610 0.66 +0.0 691,700 - EX31_RS24610 0.67 +0.0 691,794 + +0.3 691,798 + +0.1 691,798 + -0.1 691,835 + -0.5 691,836 - -0.3 691,922 - -0.1 691,925 + -0.9 691,925 + -0.1 691,926 - +1.3 691,926 - +1.5 691,929 + +1.5 691,929 + +1.1 691,929 + -0.4 691,929 + +1.0 691,930 - +0.3 691,944 + -0.6 691,944 + +1.3 691,945 - -1.0 691,945 - -0.5 691,945 - -2.2 691,951 - +0.2 691,951 - +1.6 691,983 + +1.0 691,984 - +0.2 691,984 - +0.0 691,984 - +1.4 691,984 - +0.4 692,011 - -1.3 692,011 - +0.8 692,011 - -0.4 692,016 + +0.6 692,102 + EX31_RS24615 0.12 -0.8 692,103 - EX31_RS24615 0.12 -3.2 692,204 - EX31_RS24615 0.18 -0.5 692,205 + EX31_RS24615 0.18 -0.2 692,206 - EX31_RS24615 0.18 -0.6 692,238 + EX31_RS24615 0.20 +1.4 692,238 + EX31_RS24615 0.20 +0.3 692,238 + EX31_RS24615 0.20 -0.3 692,238 + EX31_RS24615 0.20 -0.4 692,239 - EX31_RS24615 0.20 -0.6 692,239 - EX31_RS24615 0.20 -0.7 692,239 - EX31_RS24615 0.20 -3.6 692,239 - EX31_RS24615 0.20 +0.1 692,239 - EX31_RS24615 0.20 -0.5 692,239 - EX31_RS24615 0.20 +0.7 692,239 - EX31_RS24615 0.20 +0.8 692,239 - EX31_RS24615 0.20 -0.6 692,239 - EX31_RS24615 0.20 +0.9 692,239 - EX31_RS24615 0.20 +1.3 692,239 - EX31_RS24615 0.20 +0.5 692,239 - EX31_RS24615 0.20 +0.3 692,239 - EX31_RS24615 0.20 +0.0 692,369 - EX31_RS24615 0.28 -0.6 692,369 - EX31_RS24615 0.28 -1.5 692,370 + EX31_RS24615 0.28 -1.7 692,371 - EX31_RS24615 0.28 +0.2 692,371 - EX31_RS24615 0.28 -1.5 692,371 - EX31_RS24615 0.28 -0.4 692,431 + EX31_RS24615 0.32 -0.3 692,432 - EX31_RS24615 0.32 +0.7 692,473 + EX31_RS24615 0.34 -1.3 692,473 + EX31_RS24615 0.34 +1.5 692,474 - EX31_RS24615 0.34 +1.1
Or see this region's nucleotide sequence