Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22985 and EX31_RS22990 are separated by 274 nucleotides EX31_RS22990 and EX31_RS22995 are separated by 28 nucleotides EX31_RS22995 and EX31_RS23000 are separated by 33 nucleotides EX31_RS23000 and EX31_RS23005 are separated by 39 nucleotides
EX31_RS22985: EX31_RS22985 - cupin domain-containing protein, at 360,147 to 360,542
_RS22985
EX31_RS22990: EX31_RS22990 - diguanylate cyclase, at 360,817 to 361,893
_RS22990
EX31_RS22995: EX31_RS22995 - hypothetical protein, at 361,922 to 362,275
_RS22995
EX31_RS23000: EX31_RS23000 - cupin domain-containing protein, at 362,309 to 362,830
_RS23000
EX31_RS23005: EX31_RS23005 - hypothetical protein, at 362,870 to 363,115
_RS23005
Position (kb) 360
361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 359.865 kb on + strand at 359.866 kb on - strand at 359.866 kb on - strand at 359.866 kb on - strand at 359.982 kb on + strand at 359.989 kb on - strand at 359.990 kb on + strand at 359.990 kb on + strand at 360.033 kb on + strand at 360.033 kb on + strand at 360.034 kb on - strand at 360.046 kb on - strand at 360.046 kb on - strand at 360.080 kb on + strand at 360.080 kb on + strand at 360.087 kb on + strand at 360.088 kb on - strand at 360.088 kb on - strand at 360.144 kb on - strand at 360.198 kb on + strand, within EX31_RS22985 at 360.531 kb on + strand at 360.531 kb on + strand at 360.531 kb on + strand at 360.532 kb on - strand at 360.532 kb on - strand at 360.537 kb on - strand at 360.540 kb on + strand at 360.541 kb on - strand at 360.541 kb on - strand at 360.563 kb on + strand at 360.564 kb on - strand at 360.564 kb on - strand at 360.565 kb on + strand at 360.565 kb on + strand at 360.565 kb on + strand at 360.566 kb on - strand at 360.567 kb on + strand at 360.615 kb on + strand at 360.615 kb on + strand at 360.616 kb on - strand at 360.618 kb on - strand at 360.618 kb on - strand at 360.631 kb on - strand at 360.645 kb on + strand at 360.646 kb on - strand at 360.702 kb on + strand at 360.702 kb on + strand at 360.703 kb on - strand at 360.703 kb on - strand at 360.703 kb on - strand at 360.767 kb on - strand at 360.770 kb on + strand at 360.771 kb on - strand at 360.771 kb on - strand at 360.782 kb on + strand at 360.783 kb on - strand at 360.783 kb on - strand at 360.784 kb on + strand at 360.784 kb on + strand at 360.785 kb on - strand at 360.824 kb on - strand at 360.826 kb on + strand at 360.883 kb on + strand at 360.883 kb on + strand at 360.883 kb on + strand at 360.884 kb on - strand at 360.888 kb on - strand at 360.888 kb on - strand at 360.888 kb on - strand at 360.896 kb on + strand at 360.897 kb on - strand at 360.897 kb on - strand at 360.904 kb on - strand at 361.041 kb on + strand, within EX31_RS22990 at 361.134 kb on + strand, within EX31_RS22990 at 361.135 kb on - strand, within EX31_RS22990 at 361.208 kb on - strand, within EX31_RS22990 at 361.221 kb on + strand, within EX31_RS22990 at 361.222 kb on - strand, within EX31_RS22990 at 361.255 kb on + strand, within EX31_RS22990 at 361.256 kb on - strand, within EX31_RS22990 at 361.309 kb on + strand, within EX31_RS22990 at 361.309 kb on + strand, within EX31_RS22990 at 361.309 kb on + strand, within EX31_RS22990 at 361.309 kb on + strand, within EX31_RS22990 at 361.310 kb on - strand, within EX31_RS22990 at 361.310 kb on - strand, within EX31_RS22990 at 361.311 kb on + strand, within EX31_RS22990 at 361.311 kb on + strand, within EX31_RS22990 at 361.311 kb on + strand, within EX31_RS22990 at 361.311 kb on + strand, within EX31_RS22990 at 361.312 kb on - strand, within EX31_RS22990 at 361.312 kb on - strand, within EX31_RS22990 at 361.315 kb on - strand, within EX31_RS22990 at 361.336 kb on + strand, within EX31_RS22990 at 361.475 kb on + strand, within EX31_RS22990 at 361.475 kb on + strand, within EX31_RS22990 at 361.475 kb on + strand, within EX31_RS22990 at 361.475 kb on + strand, within EX31_RS22990 at 361.549 kb on + strand, within EX31_RS22990 at 361.549 kb on + strand, within EX31_RS22990 at 361.550 kb on - strand, within EX31_RS22990 at 361.550 kb on - strand, within EX31_RS22990 at 361.669 kb on + strand, within EX31_RS22990 at 361.669 kb on + strand, within EX31_RS22990 at 361.688 kb on + strand, within EX31_RS22990 at 361.783 kb on + strand, within EX31_RS22990 at 361.784 kb on - strand, within EX31_RS22990 at 361.785 kb on + strand, within EX31_RS22990 at 361.786 kb on - strand at 361.872 kb on + strand at 361.872 kb on + strand at 361.872 kb on + strand at 361.872 kb on + strand at 361.872 kb on + strand at 361.872 kb on + strand at 361.872 kb on + strand at 361.872 kb on + strand at 361.873 kb on - strand at 361.873 kb on - strand at 361.895 kb on + strand at 361.895 kb on + strand at 361.896 kb on - strand at 361.901 kb on + strand at 361.920 kb on + strand at 361.931 kb on - strand at 361.938 kb on + strand at 361.938 kb on + strand at 361.938 kb on + strand at 361.938 kb on + strand at 361.939 kb on - strand at 361.939 kb on - strand at 361.939 kb on - strand at 361.939 kb on - strand at 361.939 kb on - strand at 361.990 kb on + strand, within EX31_RS22995 at 361.991 kb on - strand, within EX31_RS22995 at 362.018 kb on + strand, within EX31_RS22995 at 362.018 kb on + strand, within EX31_RS22995 at 362.019 kb on - strand, within EX31_RS22995 at 362.066 kb on + strand, within EX31_RS22995 at 362.066 kb on + strand, within EX31_RS22995 at 362.067 kb on - strand, within EX31_RS22995 at 362.067 kb on - strand, within EX31_RS22995 at 362.067 kb on - strand, within EX31_RS22995 at 362.069 kb on - strand, within EX31_RS22995 at 362.117 kb on + strand, within EX31_RS22995 at 362.117 kb on + strand, within EX31_RS22995 at 362.187 kb on + strand, within EX31_RS22995 at 362.193 kb on + strand, within EX31_RS22995 at 362.193 kb on + strand, within EX31_RS22995 at 362.193 kb on + strand, within EX31_RS22995 at 362.193 kb on + strand, within EX31_RS22995 at 362.193 kb on + strand, within EX31_RS22995 at 362.193 kb on + strand, within EX31_RS22995 at 362.193 kb on + strand, within EX31_RS22995 at 362.194 kb on - strand, within EX31_RS22995 at 362.194 kb on - strand, within EX31_RS22995 at 362.194 kb on - strand, within EX31_RS22995 at 362.247 kb on + strand at 362.273 kb on + strand at 362.273 kb on + strand at 362.274 kb on - strand at 362.309 kb on - strand at 362.309 kb on - strand at 362.375 kb on + strand, within EX31_RS23000 at 362.446 kb on + strand, within EX31_RS23000 at 362.446 kb on + strand, within EX31_RS23000 at 362.463 kb on + strand, within EX31_RS23000 at 362.463 kb on + strand, within EX31_RS23000 at 362.463 kb on + strand, within EX31_RS23000 at 362.463 kb on + strand, within EX31_RS23000 at 362.463 kb on + strand, within EX31_RS23000 at 362.464 kb on - strand, within EX31_RS23000 at 362.464 kb on - strand, within EX31_RS23000 at 362.632 kb on + strand, within EX31_RS23000 at 362.632 kb on + strand, within EX31_RS23000 at 362.632 kb on + strand, within EX31_RS23000 at 362.632 kb on + strand, within EX31_RS23000 at 362.680 kb on + strand, within EX31_RS23000 at 362.680 kb on + strand, within EX31_RS23000 at 362.699 kb on + strand, within EX31_RS23000 at 362.700 kb on - strand, within EX31_RS23000 at 362.720 kb on + strand, within EX31_RS23000 at 362.720 kb on + strand, within EX31_RS23000 at 362.754 kb on + strand, within EX31_RS23000 at 362.754 kb on + strand, within EX31_RS23000 at 362.754 kb on + strand, within EX31_RS23000 at 362.754 kb on + strand, within EX31_RS23000 at 362.754 kb on + strand, within EX31_RS23000 at 362.754 kb on + strand, within EX31_RS23000 at 362.754 kb on + strand, within EX31_RS23000 at 362.754 kb on + strand, within EX31_RS23000 at 362.755 kb on - strand, within EX31_RS23000 at 362.755 kb on - strand, within EX31_RS23000 at 362.861 kb on + strand at 362.871 kb on + strand at 362.872 kb on - strand at 362.872 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 359,865 + +0.2 359,866 - +0.4 359,866 - -0.1 359,866 - -1.4 359,982 + -0.3 359,989 - +0.1 359,990 + -0.4 359,990 + -0.4 360,033 + +0.1 360,033 + -0.5 360,034 - -0.8 360,046 - +0.0 360,046 - +0.3 360,080 + -1.4 360,080 + -0.8 360,087 + +0.5 360,088 - -0.4 360,088 - +0.2 360,144 - +0.2 360,198 + EX31_RS22985 0.13 -0.1 360,531 + +0.8 360,531 + -0.4 360,531 + -0.1 360,532 - -0.5 360,532 - +0.7 360,537 - -0.1 360,540 + -0.2 360,541 - +1.4 360,541 - +0.2 360,563 + +0.4 360,564 - +0.2 360,564 - -0.4 360,565 + +0.5 360,565 + -0.8 360,565 + +0.6 360,566 - +0.1 360,567 + -0.1 360,615 + -0.7 360,615 + +0.4 360,616 - +0.1 360,618 - -2.5 360,618 - +0.2 360,631 - +0.8 360,645 + -0.8 360,646 - +1.0 360,702 + +0.3 360,702 + -2.7 360,703 - -0.9 360,703 - -0.5 360,703 - +0.3 360,767 - -0.6 360,770 + -3.1 360,771 - -0.6 360,771 - +0.1 360,782 + -1.0 360,783 - +1.4 360,783 - +1.9 360,784 + +0.0 360,784 + -0.2 360,785 - +0.6 360,824 - +1.7 360,826 + +0.3 360,883 + -0.4 360,883 + +0.6 360,883 + -0.3 360,884 - +1.3 360,888 - +1.2 360,888 - +0.2 360,888 - +0.6 360,896 + +0.2 360,897 - +0.2 360,897 - -1.0 360,904 - +0.8 361,041 + EX31_RS22990 0.21 +0.7 361,134 + EX31_RS22990 0.29 +1.1 361,135 - EX31_RS22990 0.30 +0.3 361,208 - EX31_RS22990 0.36 +0.1 361,221 + EX31_RS22990 0.38 +1.1 361,222 - EX31_RS22990 0.38 +0.5 361,255 + EX31_RS22990 0.41 -0.3 361,256 - EX31_RS22990 0.41 +0.0 361,309 + EX31_RS22990 0.46 +2.2 361,309 + EX31_RS22990 0.46 +0.8 361,309 + EX31_RS22990 0.46 +0.9 361,309 + EX31_RS22990 0.46 -1.8 361,310 - EX31_RS22990 0.46 +0.3 361,310 - EX31_RS22990 0.46 +0.2 361,311 + EX31_RS22990 0.46 -0.3 361,311 + EX31_RS22990 0.46 +0.7 361,311 + EX31_RS22990 0.46 +0.7 361,311 + EX31_RS22990 0.46 -0.5 361,312 - EX31_RS22990 0.46 -0.0 361,312 - EX31_RS22990 0.46 -1.2 361,315 - EX31_RS22990 0.46 -0.4 361,336 + EX31_RS22990 0.48 +0.5 361,475 + EX31_RS22990 0.61 +0.9 361,475 + EX31_RS22990 0.61 -0.0 361,475 + EX31_RS22990 0.61 +0.2 361,475 + EX31_RS22990 0.61 +0.9 361,549 + EX31_RS22990 0.68 +0.3 361,549 + EX31_RS22990 0.68 +0.3 361,550 - EX31_RS22990 0.68 +0.8 361,550 - EX31_RS22990 0.68 +0.3 361,669 + EX31_RS22990 0.79 -0.3 361,669 + EX31_RS22990 0.79 -0.9 361,688 + EX31_RS22990 0.81 +0.6 361,783 + EX31_RS22990 0.90 +0.8 361,784 - EX31_RS22990 0.90 +0.7 361,785 + EX31_RS22990 0.90 +0.8 361,786 - +0.5 361,872 + +0.6 361,872 + -0.0 361,872 + +1.0 361,872 + +0.2 361,872 + +0.3 361,872 + +1.5 361,872 + +0.1 361,872 + +0.9 361,873 - -0.5 361,873 - -1.4 361,895 + +0.9 361,895 + +0.2 361,896 - +1.5 361,901 + -0.5 361,920 + -0.6 361,931 - -2.4 361,938 + -0.7 361,938 + -0.8 361,938 + -1.5 361,938 + -0.3 361,939 - -0.1 361,939 - +1.0 361,939 - +1.3 361,939 - -0.6 361,939 - -0.8 361,990 + EX31_RS22995 0.19 -0.8 361,991 - EX31_RS22995 0.19 +0.9 362,018 + EX31_RS22995 0.27 +0.7 362,018 + EX31_RS22995 0.27 +0.3 362,019 - EX31_RS22995 0.27 -1.5 362,066 + EX31_RS22995 0.41 +0.3 362,066 + EX31_RS22995 0.41 -1.0 362,067 - EX31_RS22995 0.41 -0.4 362,067 - EX31_RS22995 0.41 +0.2 362,067 - EX31_RS22995 0.41 -1.7 362,069 - EX31_RS22995 0.42 -2.3 362,117 + EX31_RS22995 0.55 +0.3 362,117 + EX31_RS22995 0.55 -0.2 362,187 + EX31_RS22995 0.75 +0.6 362,193 + EX31_RS22995 0.77 +0.3 362,193 + EX31_RS22995 0.77 +0.6 362,193 + EX31_RS22995 0.77 -1.0 362,193 + EX31_RS22995 0.77 -2.5 362,193 + EX31_RS22995 0.77 -1.3 362,193 + EX31_RS22995 0.77 +0.2 362,193 + EX31_RS22995 0.77 +1.2 362,194 - EX31_RS22995 0.77 -0.5 362,194 - EX31_RS22995 0.77 +1.1 362,194 - EX31_RS22995 0.77 -1.2 362,247 + -0.1 362,273 + -0.3 362,273 + +0.1 362,274 - +0.5 362,309 - +0.5 362,309 - +1.2 362,375 + EX31_RS23000 0.13 -0.4 362,446 + EX31_RS23000 0.26 -0.3 362,446 + EX31_RS23000 0.26 -0.6 362,463 + EX31_RS23000 0.30 -0.5 362,463 + EX31_RS23000 0.30 +0.1 362,463 + EX31_RS23000 0.30 +0.4 362,463 + EX31_RS23000 0.30 +0.2 362,463 + EX31_RS23000 0.30 -0.7 362,464 - EX31_RS23000 0.30 -1.8 362,464 - EX31_RS23000 0.30 -0.0 362,632 + EX31_RS23000 0.62 +0.7 362,632 + EX31_RS23000 0.62 +0.1 362,632 + EX31_RS23000 0.62 +0.3 362,632 + EX31_RS23000 0.62 +0.5 362,680 + EX31_RS23000 0.71 -1.2 362,680 + EX31_RS23000 0.71 -0.8 362,699 + EX31_RS23000 0.75 -0.3 362,700 - EX31_RS23000 0.75 -0.8 362,720 + EX31_RS23000 0.79 +0.3 362,720 + EX31_RS23000 0.79 -0.5 362,754 + EX31_RS23000 0.85 -1.5 362,754 + EX31_RS23000 0.85 -0.6 362,754 + EX31_RS23000 0.85 +0.1 362,754 + EX31_RS23000 0.85 +0.5 362,754 + EX31_RS23000 0.85 +0.8 362,754 + EX31_RS23000 0.85 -0.1 362,754 + EX31_RS23000 0.85 -0.8 362,754 + EX31_RS23000 0.85 -0.5 362,755 - EX31_RS23000 0.85 -1.1 362,755 - EX31_RS23000 0.85 -0.0 362,861 + +0.4 362,871 + -0.1 362,872 - -1.0 362,872 - -0.4
Or see this region's nucleotide sequence