Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22705 and EX31_RS22710 are separated by 176 nucleotides EX31_RS22710 and EX31_RS22715 are separated by 53 nucleotides EX31_RS22715 and EX31_RS22720 are separated by 27 nucleotides
EX31_RS22705: EX31_RS22705 - uracil permease, at 300,861 to 302,153
_RS22705
EX31_RS22710: EX31_RS22710 - DnaA inactivator Hda, at 302,330 to 303,037
_RS22710
EX31_RS22715: EX31_RS22715 - arsenate reductase (glutaredoxin), at 303,091 to 303,447
_RS22715
EX31_RS22720: EX31_RS22720 - M48 family metallopeptidase, at 303,475 to 305,013
_RS22720
Position (kb) 303
304 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 302.265 kb on + strand at 303.094 kb on + strand at 303.095 kb on - strand at 303.095 kb on - strand at 303.244 kb on - strand, within EX31_RS22715 at 303.245 kb on + strand, within EX31_RS22715 at 303.246 kb on - strand, within EX31_RS22715 at 303.319 kb on - strand, within EX31_RS22715 at 303.421 kb on - strand at 303.421 kb on - strand at 303.426 kb on - strand at 303.426 kb on - strand at 303.426 kb on - strand at 303.426 kb on - strand at 303.426 kb on - strand at 303.572 kb on - strand at 303.572 kb on - strand at 303.586 kb on - strand at 303.622 kb on + strand at 303.664 kb on + strand, within EX31_RS22720 at 303.665 kb on - strand, within EX31_RS22720 at 303.723 kb on - strand, within EX31_RS22720 at 303.733 kb on - strand, within EX31_RS22720 at 303.733 kb on - strand, within EX31_RS22720 at 303.733 kb on - strand, within EX31_RS22720 at 303.733 kb on - strand, within EX31_RS22720 at 303.733 kb on - strand, within EX31_RS22720 at 303.733 kb on - strand, within EX31_RS22720 at 303.734 kb on + strand, within EX31_RS22720 at 303.782 kb on + strand, within EX31_RS22720 at 303.782 kb on + strand, within EX31_RS22720 at 303.782 kb on + strand, within EX31_RS22720 at 303.782 kb on + strand, within EX31_RS22720 at 303.782 kb on + strand, within EX31_RS22720 at 303.782 kb on + strand, within EX31_RS22720 at 303.883 kb on - strand, within EX31_RS22720 at 303.908 kb on - strand, within EX31_RS22720 at 303.981 kb on + strand, within EX31_RS22720 at 303.982 kb on - strand, within EX31_RS22720 at 303.983 kb on + strand, within EX31_RS22720 at 303.983 kb on + strand, within EX31_RS22720 at 304.004 kb on + strand, within EX31_RS22720 at 304.004 kb on + strand, within EX31_RS22720 at 304.005 kb on - strand, within EX31_RS22720 at 304.005 kb on - strand, within EX31_RS22720 at 304.005 kb on - strand, within EX31_RS22720 at 304.055 kb on + strand, within EX31_RS22720 at 304.056 kb on - strand, within EX31_RS22720 at 304.056 kb on - strand, within EX31_RS22720 at 304.056 kb on - strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.100 kb on - strand, within EX31_RS22720 at 304.100 kb on - strand, within EX31_RS22720 at 304.105 kb on + strand, within EX31_RS22720 at 304.106 kb on - strand, within EX31_RS22720 at 304.106 kb on - strand, within EX31_RS22720 at 304.106 kb on - strand, within EX31_RS22720 at 304.106 kb on - strand, within EX31_RS22720 at 304.106 kb on - strand, within EX31_RS22720 at 304.106 kb on - strand, within EX31_RS22720 at 304.121 kb on + strand, within EX31_RS22720 at 304.239 kb on - strand, within EX31_RS22720 at 304.307 kb on - strand, within EX31_RS22720 at 304.307 kb on - strand, within EX31_RS22720 at 304.307 kb on - strand, within EX31_RS22720 at 304.384 kb on + strand, within EX31_RS22720 at 304.384 kb on + strand, within EX31_RS22720 at 304.385 kb on - strand, within EX31_RS22720 at 304.385 kb on - strand, within EX31_RS22720 at 304.385 kb on - strand, within EX31_RS22720 at 304.385 kb on - strand, within EX31_RS22720
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 302,265 + +0.9 303,094 + +0.4 303,095 - +0.9 303,095 - +0.2 303,244 - EX31_RS22715 0.43 +1.3 303,245 + EX31_RS22715 0.43 +0.6 303,246 - EX31_RS22715 0.43 -3.0 303,319 - EX31_RS22715 0.64 +0.3 303,421 - +1.0 303,421 - +0.1 303,426 - +0.1 303,426 - -0.3 303,426 - -0.8 303,426 - +1.1 303,426 - -0.1 303,572 - +0.1 303,572 - -0.1 303,586 - -0.1 303,622 + -0.5 303,664 + EX31_RS22720 0.12 +0.2 303,665 - EX31_RS22720 0.12 +0.4 303,723 - EX31_RS22720 0.16 +0.6 303,733 - EX31_RS22720 0.17 -2.3 303,733 - EX31_RS22720 0.17 -1.1 303,733 - EX31_RS22720 0.17 -0.2 303,733 - EX31_RS22720 0.17 -0.4 303,733 - EX31_RS22720 0.17 -0.9 303,733 - EX31_RS22720 0.17 -0.8 303,734 + EX31_RS22720 0.17 +1.1 303,782 + EX31_RS22720 0.20 +0.3 303,782 + EX31_RS22720 0.20 +0.7 303,782 + EX31_RS22720 0.20 +0.1 303,782 + EX31_RS22720 0.20 -1.4 303,782 + EX31_RS22720 0.20 +0.4 303,782 + EX31_RS22720 0.20 -0.4 303,883 - EX31_RS22720 0.27 +0.2 303,908 - EX31_RS22720 0.28 -0.1 303,981 + EX31_RS22720 0.33 +0.2 303,982 - EX31_RS22720 0.33 -0.4 303,983 + EX31_RS22720 0.33 -0.5 303,983 + EX31_RS22720 0.33 +0.4 304,004 + EX31_RS22720 0.34 +0.9 304,004 + EX31_RS22720 0.34 -1.2 304,005 - EX31_RS22720 0.34 -1.5 304,005 - EX31_RS22720 0.34 +0.1 304,005 - EX31_RS22720 0.34 -0.1 304,055 + EX31_RS22720 0.38 -0.3 304,056 - EX31_RS22720 0.38 +0.5 304,056 - EX31_RS22720 0.38 -0.2 304,056 - EX31_RS22720 0.38 -0.1 304,088 + EX31_RS22720 0.40 -0.0 304,088 + EX31_RS22720 0.40 -1.0 304,088 + EX31_RS22720 0.40 +0.5 304,088 + EX31_RS22720 0.40 -1.7 304,088 + EX31_RS22720 0.40 +0.3 304,088 + EX31_RS22720 0.40 -0.2 304,088 + EX31_RS22720 0.40 +0.4 304,088 + EX31_RS22720 0.40 -0.4 304,088 + EX31_RS22720 0.40 +0.5 304,089 - EX31_RS22720 0.40 -0.6 304,089 - EX31_RS22720 0.40 -0.5 304,089 - EX31_RS22720 0.40 -1.6 304,089 - EX31_RS22720 0.40 -0.8 304,089 - EX31_RS22720 0.40 -0.4 304,089 - EX31_RS22720 0.40 +0.1 304,089 - EX31_RS22720 0.40 -0.5 304,089 - EX31_RS22720 0.40 -0.2 304,089 - EX31_RS22720 0.40 -1.0 304,100 - EX31_RS22720 0.41 -0.0 304,100 - EX31_RS22720 0.41 -0.1 304,105 + EX31_RS22720 0.41 -0.6 304,106 - EX31_RS22720 0.41 -0.2 304,106 - EX31_RS22720 0.41 -0.1 304,106 - EX31_RS22720 0.41 +0.5 304,106 - EX31_RS22720 0.41 +0.1 304,106 - EX31_RS22720 0.41 -0.7 304,106 - EX31_RS22720 0.41 +0.1 304,121 + EX31_RS22720 0.42 -0.1 304,239 - EX31_RS22720 0.50 +0.1 304,307 - EX31_RS22720 0.54 -0.4 304,307 - EX31_RS22720 0.54 +0.7 304,307 - EX31_RS22720 0.54 +0.2 304,384 + EX31_RS22720 0.59 +1.0 304,384 + EX31_RS22720 0.59 +0.3 304,385 - EX31_RS22720 0.59 +0.9 304,385 - EX31_RS22720 0.59 -0.1 304,385 - EX31_RS22720 0.59 +0.1 304,385 - EX31_RS22720 0.59 +0.3
Or see this region's nucleotide sequence