Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22180 and EX31_RS22185 are separated by 240 nucleotides EX31_RS22185 and EX31_RS22190 are separated by 58 nucleotides
EX31_RS22180: EX31_RS22180 - 2-dehydropantoate 2-reductase, at 184,070 to 184,981
_RS22180
EX31_RS22185: EX31_RS22185 - YajQ family cyclic di-GMP-binding protein, at 185,222 to 185,713
_RS22185
EX31_RS22190: EX31_RS22190 - Gfo/Idh/MocA family oxidoreductase, at 185,772 to 187,070
_RS22190
Position (kb) 185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 184.287 kb on + strand, within EX31_RS22180 at 184.383 kb on + strand, within EX31_RS22180 at 184.384 kb on - strand, within EX31_RS22180 at 184.413 kb on + strand, within EX31_RS22180 at 184.413 kb on + strand, within EX31_RS22180 at 184.510 kb on + strand, within EX31_RS22180 at 184.664 kb on + strand, within EX31_RS22180 at 184.665 kb on - strand, within EX31_RS22180 at 184.665 kb on - strand, within EX31_RS22180 at 184.701 kb on - strand, within EX31_RS22180 at 184.701 kb on - strand, within EX31_RS22180 at 184.701 kb on - strand, within EX31_RS22180 at 184.714 kb on + strand, within EX31_RS22180 at 184.715 kb on - strand, within EX31_RS22180 at 184.720 kb on + strand, within EX31_RS22180 at 184.720 kb on + strand, within EX31_RS22180 at 184.720 kb on + strand, within EX31_RS22180 at 184.720 kb on + strand, within EX31_RS22180 at 184.721 kb on - strand, within EX31_RS22180 at 184.743 kb on - strand, within EX31_RS22180 at 184.784 kb on + strand, within EX31_RS22180 at 184.785 kb on - strand, within EX31_RS22180 at 184.785 kb on - strand, within EX31_RS22180 at 184.817 kb on - strand, within EX31_RS22180 at 184.819 kb on + strand, within EX31_RS22180 at 184.819 kb on + strand, within EX31_RS22180 at 184.819 kb on + strand, within EX31_RS22180 at 184.819 kb on + strand, within EX31_RS22180 at 184.825 kb on + strand, within EX31_RS22180 at 184.834 kb on + strand, within EX31_RS22180 at 184.835 kb on - strand, within EX31_RS22180 at 184.924 kb on - strand at 184.924 kb on - strand at 184.968 kb on - strand at 185.021 kb on + strand at 185.022 kb on - strand at 185.037 kb on + strand at 185.037 kb on + strand at 185.061 kb on + strand at 185.061 kb on + strand at 185.061 kb on + strand at 185.062 kb on - strand at 185.062 kb on - strand at 185.062 kb on - strand at 185.062 kb on - strand at 185.062 kb on - strand at 185.062 kb on - strand at 185.062 kb on - strand at 185.062 kb on - strand at 185.081 kb on + strand at 185.082 kb on - strand at 185.082 kb on - strand at 185.082 kb on - strand at 185.124 kb on + strand at 185.124 kb on + strand at 185.124 kb on + strand at 185.170 kb on + strand at 185.173 kb on + strand at 185.173 kb on + strand at 185.174 kb on - strand at 185.174 kb on - strand at 185.174 kb on - strand at 185.174 kb on - strand at 185.184 kb on + strand at 185.184 kb on + strand at 185.184 kb on + strand at 185.184 kb on + strand at 185.184 kb on + strand at 185.184 kb on + strand at 185.184 kb on + strand at 185.184 kb on + strand at 185.184 kb on + strand at 185.184 kb on + strand at 185.185 kb on - strand at 185.185 kb on - strand at 185.185 kb on - strand at 185.186 kb on + strand at 185.186 kb on + strand at 185.186 kb on + strand at 185.186 kb on + strand at 185.186 kb on + strand at 185.186 kb on + strand at 185.186 kb on + strand at 185.187 kb on - strand at 185.187 kb on - strand at 185.187 kb on - strand at 185.187 kb on - strand at 185.187 kb on - strand at 185.221 kb on + strand at 185.221 kb on + strand at 185.221 kb on + strand at 185.362 kb on + strand, within EX31_RS22185 at 185.488 kb on + strand, within EX31_RS22185 at 185.495 kb on + strand, within EX31_RS22185 at 185.649 kb on + strand, within EX31_RS22185 at 185.714 kb on + strand at 185.723 kb on + strand at 185.724 kb on - strand at 185.726 kb on + strand at 185.726 kb on + strand at 185.726 kb on + strand at 185.726 kb on + strand at 185.726 kb on + strand at 185.726 kb on + strand at 185.727 kb on - strand at 185.774 kb on - strand at 185.814 kb on - strand at 185.819 kb on - strand at 186.023 kb on - strand, within EX31_RS22190 at 186.086 kb on - strand, within EX31_RS22190 at 186.163 kb on + strand, within EX31_RS22190 at 186.164 kb on - strand, within EX31_RS22190 at 186.178 kb on + strand, within EX31_RS22190 at 186.184 kb on - strand, within EX31_RS22190 at 186.184 kb on - strand, within EX31_RS22190 at 186.189 kb on + strand, within EX31_RS22190 at 186.189 kb on + strand, within EX31_RS22190 at 186.189 kb on + strand, within EX31_RS22190 at 186.189 kb on + strand, within EX31_RS22190 at 186.190 kb on - strand, within EX31_RS22190 at 186.202 kb on + strand, within EX31_RS22190 at 186.224 kb on + strand, within EX31_RS22190 at 186.224 kb on + strand, within EX31_RS22190 at 186.224 kb on + strand, within EX31_RS22190 at 186.225 kb on - strand, within EX31_RS22190 at 186.225 kb on - strand, within EX31_RS22190 at 186.225 kb on - strand, within EX31_RS22190 at 186.225 kb on - strand, within EX31_RS22190 at 186.225 kb on - strand, within EX31_RS22190 at 186.225 kb on - strand, within EX31_RS22190 at 186.272 kb on - strand, within EX31_RS22190 at 186.276 kb on - strand, within EX31_RS22190 at 186.299 kb on - strand, within EX31_RS22190 at 186.374 kb on + strand, within EX31_RS22190 at 186.375 kb on - strand, within EX31_RS22190 at 186.375 kb on - strand, within EX31_RS22190 at 186.449 kb on - strand, within EX31_RS22190 at 186.449 kb on - strand, within EX31_RS22190 at 186.612 kb on + strand, within EX31_RS22190 at 186.676 kb on + strand, within EX31_RS22190 at 186.677 kb on - strand, within EX31_RS22190
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 184,287 + EX31_RS22180 0.24 +0.4 184,383 + EX31_RS22180 0.34 +0.8 184,384 - EX31_RS22180 0.34 -2.5 184,413 + EX31_RS22180 0.38 -0.6 184,413 + EX31_RS22180 0.38 -0.3 184,510 + EX31_RS22180 0.48 +2.6 184,664 + EX31_RS22180 0.65 +0.0 184,665 - EX31_RS22180 0.65 -0.8 184,665 - EX31_RS22180 0.65 -0.2 184,701 - EX31_RS22180 0.69 -0.3 184,701 - EX31_RS22180 0.69 -0.5 184,701 - EX31_RS22180 0.69 -0.2 184,714 + EX31_RS22180 0.71 -0.0 184,715 - EX31_RS22180 0.71 -0.6 184,720 + EX31_RS22180 0.71 +0.5 184,720 + EX31_RS22180 0.71 +0.2 184,720 + EX31_RS22180 0.71 +0.4 184,720 + EX31_RS22180 0.71 -0.4 184,721 - EX31_RS22180 0.71 -1.7 184,743 - EX31_RS22180 0.74 +0.1 184,784 + EX31_RS22180 0.78 -0.2 184,785 - EX31_RS22180 0.78 +0.8 184,785 - EX31_RS22180 0.78 -0.1 184,817 - EX31_RS22180 0.82 -0.2 184,819 + EX31_RS22180 0.82 -1.5 184,819 + EX31_RS22180 0.82 -0.3 184,819 + EX31_RS22180 0.82 -2.9 184,819 + EX31_RS22180 0.82 +0.2 184,825 + EX31_RS22180 0.83 +0.5 184,834 + EX31_RS22180 0.84 +0.5 184,835 - EX31_RS22180 0.84 -1.5 184,924 - +0.8 184,924 - +0.9 184,968 - -0.2 185,021 + +0.4 185,022 - -2.1 185,037 + -1.1 185,037 + -2.1 185,061 + -0.0 185,061 + -0.4 185,061 + -0.8 185,062 - +0.3 185,062 - +1.0 185,062 - -1.9 185,062 - +0.2 185,062 - -0.4 185,062 - +0.2 185,062 - -0.2 185,062 - +0.0 185,081 + +0.1 185,082 - +0.2 185,082 - -0.6 185,082 - +0.9 185,124 + +0.3 185,124 + -0.2 185,124 + -0.9 185,170 + -0.6 185,173 + +0.6 185,173 + +0.3 185,174 - +0.9 185,174 - -0.7 185,174 - +0.9 185,174 - +0.1 185,184 + +0.2 185,184 + -0.2 185,184 + -0.1 185,184 + -0.1 185,184 + +0.4 185,184 + -0.3 185,184 + -0.5 185,184 + +0.6 185,184 + +0.2 185,184 + -0.5 185,185 - +0.7 185,185 - +0.6 185,185 - -1.1 185,186 + -1.3 185,186 + +0.3 185,186 + -0.2 185,186 + +0.3 185,186 + +0.6 185,186 + +0.7 185,186 + +0.2 185,187 - -0.3 185,187 - -0.0 185,187 - +0.6 185,187 - -0.1 185,187 - +0.8 185,221 + +0.2 185,221 + +1.0 185,221 + -0.5 185,362 + EX31_RS22185 0.28 +0.5 185,488 + EX31_RS22185 0.54 +0.4 185,495 + EX31_RS22185 0.55 +0.4 185,649 + EX31_RS22185 0.87 +0.5 185,714 + +0.4 185,723 + -0.3 185,724 - -0.9 185,726 + -0.2 185,726 + +0.1 185,726 + -0.3 185,726 + +0.8 185,726 + -0.4 185,726 + -0.0 185,727 - -0.3 185,774 - +0.5 185,814 - -3.1 185,819 - +0.9 186,023 - EX31_RS22190 0.19 +0.3 186,086 - EX31_RS22190 0.24 +0.3 186,163 + EX31_RS22190 0.30 +0.4 186,164 - EX31_RS22190 0.30 -0.2 186,178 + EX31_RS22190 0.31 -0.1 186,184 - EX31_RS22190 0.32 +0.5 186,184 - EX31_RS22190 0.32 -0.3 186,189 + EX31_RS22190 0.32 +1.0 186,189 + EX31_RS22190 0.32 -1.4 186,189 + EX31_RS22190 0.32 +1.1 186,189 + EX31_RS22190 0.32 +0.5 186,190 - EX31_RS22190 0.32 -0.6 186,202 + EX31_RS22190 0.33 +1.1 186,224 + EX31_RS22190 0.35 +0.2 186,224 + EX31_RS22190 0.35 +1.0 186,224 + EX31_RS22190 0.35 -2.6 186,225 - EX31_RS22190 0.35 +0.8 186,225 - EX31_RS22190 0.35 -0.2 186,225 - EX31_RS22190 0.35 -0.4 186,225 - EX31_RS22190 0.35 +0.3 186,225 - EX31_RS22190 0.35 -0.3 186,225 - EX31_RS22190 0.35 +0.4 186,272 - EX31_RS22190 0.38 -0.3 186,276 - EX31_RS22190 0.39 -0.9 186,299 - EX31_RS22190 0.41 +0.6 186,374 + EX31_RS22190 0.46 -0.1 186,375 - EX31_RS22190 0.46 -0.4 186,375 - EX31_RS22190 0.46 -1.3 186,449 - EX31_RS22190 0.52 -0.8 186,449 - EX31_RS22190 0.52 -0.2 186,612 + EX31_RS22190 0.65 +0.4 186,676 + EX31_RS22190 0.70 +0.1 186,677 - EX31_RS22190 0.70 +0.4
Or see this region's nucleotide sequence