Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19400 and EX31_RS19405 are separated by 14 nucleotides EX31_RS19405 and EX31_RS19410 overlap by 4 nucleotides EX31_RS19410 and EX31_RS19415 are separated by 143 nucleotides
EX31_RS19400: EX31_RS19400 - NADH-quinone oxidoreductase subunit NuoI, at 506,967 to 507,509
_RS19400
EX31_RS19405: EX31_RS19405 - NADH-quinone oxidoreductase subunit NuoH, at 507,524 to 508,501
_RS19405
EX31_RS19410: EX31_RS19410 - NADH-quinone oxidoreductase subunit NuoG, at 508,498 to 511,224
_RS19410
EX31_RS19415: EX31_RS19415 - NADH-quinone oxidoreductase subunit NuoF, at 511,368 to 512,729
_RS19415
Position (kb) 508
509
510
511
512 Strain fitness (log2 ratio) -2
-1
0
1
2 at 507.513 kb on + strand at 507.513 kb on + strand at 507.513 kb on + strand at 507.513 kb on + strand at 507.513 kb on + strand at 507.513 kb on + strand at 507.514 kb on - strand at 507.514 kb on - strand at 507.514 kb on - strand at 507.525 kb on + strand at 507.526 kb on - strand at 507.568 kb on + strand at 507.569 kb on - strand at 507.569 kb on - strand at 507.573 kb on - strand at 507.573 kb on - strand at 507.573 kb on - strand at 507.777 kb on + strand, within EX31_RS19405 at 507.777 kb on + strand, within EX31_RS19405 at 507.778 kb on - strand, within EX31_RS19405 at 507.778 kb on - strand, within EX31_RS19405 at 507.778 kb on - strand, within EX31_RS19405 at 508.036 kb on - strand, within EX31_RS19405 at 508.090 kb on + strand, within EX31_RS19405 at 508.157 kb on - strand, within EX31_RS19405 at 508.252 kb on + strand, within EX31_RS19405 at 508.252 kb on + strand, within EX31_RS19405 at 508.481 kb on + strand at 508.482 kb on - strand at 508.489 kb on + strand at 508.722 kb on + strand at 508.723 kb on - strand at 508.723 kb on - strand at 508.723 kb on - strand at 508.781 kb on + strand, within EX31_RS19410 at 508.782 kb on - strand, within EX31_RS19410 at 508.987 kb on - strand, within EX31_RS19410 at 509.088 kb on + strand, within EX31_RS19410 at 509.165 kb on - strand, within EX31_RS19410 at 509.165 kb on - strand, within EX31_RS19410 at 509.309 kb on + strand, within EX31_RS19410 at 509.309 kb on + strand, within EX31_RS19410 at 509.310 kb on - strand, within EX31_RS19410 at 509.310 kb on - strand, within EX31_RS19410 at 509.310 kb on - strand, within EX31_RS19410 at 509.313 kb on - strand, within EX31_RS19410 at 509.424 kb on + strand, within EX31_RS19410 at 509.425 kb on - strand, within EX31_RS19410 at 509.638 kb on - strand, within EX31_RS19410 at 509.659 kb on + strand, within EX31_RS19410 at 509.891 kb on + strand, within EX31_RS19410 at 509.891 kb on + strand, within EX31_RS19410 at 509.891 kb on + strand, within EX31_RS19410 at 509.892 kb on - strand, within EX31_RS19410 at 509.892 kb on - strand, within EX31_RS19410 at 509.892 kb on - strand, within EX31_RS19410 at 510.079 kb on + strand, within EX31_RS19410 at 510.080 kb on - strand, within EX31_RS19410 at 510.111 kb on - strand, within EX31_RS19410 at 510.211 kb on - strand, within EX31_RS19410 at 510.211 kb on - strand, within EX31_RS19410 at 510.212 kb on + strand, within EX31_RS19410 at 510.212 kb on + strand, within EX31_RS19410 at 510.213 kb on - strand, within EX31_RS19410 at 510.312 kb on + strand, within EX31_RS19410 at 510.312 kb on + strand, within EX31_RS19410 at 510.312 kb on + strand, within EX31_RS19410 at 510.313 kb on - strand, within EX31_RS19410 at 510.313 kb on - strand, within EX31_RS19410 at 510.410 kb on + strand, within EX31_RS19410 at 510.466 kb on - strand, within EX31_RS19410 at 510.466 kb on - strand, within EX31_RS19410 at 510.481 kb on - strand, within EX31_RS19410 at 510.519 kb on + strand, within EX31_RS19410 at 510.519 kb on + strand, within EX31_RS19410 at 510.520 kb on - strand, within EX31_RS19410 at 510.520 kb on - strand, within EX31_RS19410 at 510.520 kb on - strand, within EX31_RS19410 at 510.574 kb on - strand, within EX31_RS19410 at 510.579 kb on + strand, within EX31_RS19410 at 510.580 kb on - strand, within EX31_RS19410 at 510.580 kb on - strand, within EX31_RS19410 at 510.581 kb on + strand, within EX31_RS19410 at 510.582 kb on - strand, within EX31_RS19410 at 510.582 kb on - strand, within EX31_RS19410 at 510.687 kb on - strand, within EX31_RS19410 at 510.743 kb on + strand, within EX31_RS19410 at 510.744 kb on - strand, within EX31_RS19410 at 510.744 kb on - strand, within EX31_RS19410 at 510.744 kb on - strand, within EX31_RS19410 at 510.910 kb on + strand, within EX31_RS19410 at 510.910 kb on + strand, within EX31_RS19410 at 511.023 kb on + strand at 511.024 kb on - strand at 511.024 kb on - strand at 511.024 kb on - strand at 511.024 kb on - strand at 511.024 kb on - strand at 511.024 kb on - strand at 511.024 kb on - strand at 511.024 kb on - strand at 511.024 kb on - strand at 511.187 kb on - strand at 511.194 kb on - strand at 511.208 kb on - strand at 511.208 kb on - strand at 511.208 kb on - strand at 511.292 kb on + strand at 511.292 kb on + strand at 511.293 kb on - strand at 511.293 kb on - strand at 511.293 kb on - strand at 511.293 kb on - strand at 511.293 kb on - strand at 511.293 kb on - strand at 511.294 kb on + strand at 511.295 kb on - strand at 511.295 kb on - strand at 511.295 kb on - strand at 511.295 kb on - strand at 511.370 kb on - strand at 511.429 kb on + strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.476 kb on - strand at 511.650 kb on - strand, within EX31_RS19415 at 511.758 kb on - strand, within EX31_RS19415 at 512.003 kb on + strand, within EX31_RS19415 at 512.012 kb on - strand, within EX31_RS19415 at 512.133 kb on - strand, within EX31_RS19415
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 507,513 + -0.8 507,513 + -0.0 507,513 + -1.1 507,513 + +0.2 507,513 + +0.2 507,513 + +1.2 507,514 - +1.2 507,514 - +0.6 507,514 - -1.8 507,525 + +0.7 507,526 - -0.4 507,568 + +0.0 507,569 - -0.6 507,569 - -1.4 507,573 - +1.0 507,573 - -0.4 507,573 - +0.0 507,777 + EX31_RS19405 0.26 -0.3 507,777 + EX31_RS19405 0.26 +0.5 507,778 - EX31_RS19405 0.26 +0.4 507,778 - EX31_RS19405 0.26 -1.3 507,778 - EX31_RS19405 0.26 +0.2 508,036 - EX31_RS19405 0.52 -1.0 508,090 + EX31_RS19405 0.58 -0.2 508,157 - EX31_RS19405 0.65 -1.4 508,252 + EX31_RS19405 0.74 +1.3 508,252 + EX31_RS19405 0.74 +0.4 508,481 + -0.3 508,482 - +1.0 508,489 + -0.1 508,722 + +0.5 508,723 - +1.1 508,723 - -0.0 508,723 - -0.2 508,781 + EX31_RS19410 0.10 -0.4 508,782 - EX31_RS19410 0.10 -1.2 508,987 - EX31_RS19410 0.18 +0.5 509,088 + EX31_RS19410 0.22 -0.3 509,165 - EX31_RS19410 0.24 +1.5 509,165 - EX31_RS19410 0.24 -1.4 509,309 + EX31_RS19410 0.30 -1.2 509,309 + EX31_RS19410 0.30 +0.7 509,310 - EX31_RS19410 0.30 +2.3 509,310 - EX31_RS19410 0.30 -0.5 509,310 - EX31_RS19410 0.30 -0.5 509,313 - EX31_RS19410 0.30 +1.1 509,424 + EX31_RS19410 0.34 +1.1 509,425 - EX31_RS19410 0.34 +1.2 509,638 - EX31_RS19410 0.42 +1.5 509,659 + EX31_RS19410 0.43 -0.8 509,891 + EX31_RS19410 0.51 +0.1 509,891 + EX31_RS19410 0.51 +0.6 509,891 + EX31_RS19410 0.51 +0.3 509,892 - EX31_RS19410 0.51 -0.9 509,892 - EX31_RS19410 0.51 +1.2 509,892 - EX31_RS19410 0.51 -0.2 510,079 + EX31_RS19410 0.58 -0.5 510,080 - EX31_RS19410 0.58 +0.6 510,111 - EX31_RS19410 0.59 +0.8 510,211 - EX31_RS19410 0.63 +1.0 510,211 - EX31_RS19410 0.63 +0.2 510,212 + EX31_RS19410 0.63 +1.0 510,212 + EX31_RS19410 0.63 +0.3 510,213 - EX31_RS19410 0.63 -0.6 510,312 + EX31_RS19410 0.67 +1.7 510,312 + EX31_RS19410 0.67 +1.2 510,312 + EX31_RS19410 0.67 -0.8 510,313 - EX31_RS19410 0.67 +1.5 510,313 - EX31_RS19410 0.67 +0.5 510,410 + EX31_RS19410 0.70 +0.8 510,466 - EX31_RS19410 0.72 +0.8 510,466 - EX31_RS19410 0.72 +1.7 510,481 - EX31_RS19410 0.73 -0.6 510,519 + EX31_RS19410 0.74 -0.0 510,519 + EX31_RS19410 0.74 -0.8 510,520 - EX31_RS19410 0.74 +0.4 510,520 - EX31_RS19410 0.74 +1.5 510,520 - EX31_RS19410 0.74 +2.5 510,574 - EX31_RS19410 0.76 -1.6 510,579 + EX31_RS19410 0.76 -0.7 510,580 - EX31_RS19410 0.76 -0.4 510,580 - EX31_RS19410 0.76 -0.2 510,581 + EX31_RS19410 0.76 -0.0 510,582 - EX31_RS19410 0.76 -0.8 510,582 - EX31_RS19410 0.76 -0.5 510,687 - EX31_RS19410 0.80 -0.2 510,743 + EX31_RS19410 0.82 +1.4 510,744 - EX31_RS19410 0.82 +1.1 510,744 - EX31_RS19410 0.82 +1.6 510,744 - EX31_RS19410 0.82 +0.4 510,910 + EX31_RS19410 0.88 +1.5 510,910 + EX31_RS19410 0.88 -1.0 511,023 + +0.8 511,024 - -0.1 511,024 - +1.4 511,024 - +0.2 511,024 - +0.7 511,024 - +1.1 511,024 - -1.1 511,024 - +1.0 511,024 - +1.9 511,024 - +0.3 511,187 - -0.7 511,194 - +0.8 511,208 - +1.1 511,208 - +0.8 511,208 - -0.8 511,292 + +1.1 511,292 + +0.2 511,293 - -1.0 511,293 - +0.5 511,293 - +0.0 511,293 - -0.2 511,293 - -0.6 511,293 - -0.3 511,294 + -1.4 511,295 - -0.1 511,295 - +0.8 511,295 - -0.0 511,295 - -0.4 511,370 - -1.3 511,429 + +0.8 511,430 - +0.1 511,430 - +0.6 511,430 - -0.3 511,430 - -0.3 511,430 - -0.8 511,430 - +0.1 511,430 - +0.4 511,430 - +0.2 511,430 - +0.7 511,430 - +1.4 511,430 - -1.3 511,476 - +1.3 511,650 - EX31_RS19415 0.21 -1.7 511,758 - EX31_RS19415 0.29 +0.5 512,003 + EX31_RS19415 0.47 -0.5 512,012 - EX31_RS19415 0.47 -0.8 512,133 - EX31_RS19415 0.56 +1.9
Or see this region's nucleotide sequence