Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18680 and EX31_RS18685 are separated by 226 nucleotides EX31_RS18685 and EX31_RS18690 are separated by 250 nucleotides
EX31_RS18680: EX31_RS18680 - galactose/methyl galactoside ABC transporter ATP-binding protein MglA, at 315,145 to 316,677
_RS18680
EX31_RS18685: EX31_RS18685 - galactose/glucose ABC transporter substrate-binding protein MglB, at 316,904 to 317,902
_RS18685
EX31_RS18690: EX31_RS18690 - HTH-type transcriptional regulator GalS, at 318,153 to 319,184
_RS18690
Position (kb) 316
317
318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 315.982 kb on - strand, within EX31_RS18680 at 315.982 kb on - strand, within EX31_RS18680 at 316.045 kb on - strand, within EX31_RS18680 at 316.053 kb on + strand, within EX31_RS18680 at 316.054 kb on - strand, within EX31_RS18680 at 316.054 kb on - strand, within EX31_RS18680 at 316.055 kb on + strand, within EX31_RS18680 at 316.055 kb on + strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.087 kb on - strand, within EX31_RS18680 at 316.169 kb on + strand, within EX31_RS18680 at 316.286 kb on + strand, within EX31_RS18680 at 316.309 kb on + strand, within EX31_RS18680 at 316.309 kb on + strand, within EX31_RS18680 at 316.310 kb on - strand, within EX31_RS18680 at 316.376 kb on - strand, within EX31_RS18680 at 316.435 kb on - strand, within EX31_RS18680 at 316.435 kb on - strand, within EX31_RS18680 at 316.479 kb on - strand, within EX31_RS18680 at 316.479 kb on - strand, within EX31_RS18680 at 316.499 kb on - strand, within EX31_RS18680 at 316.501 kb on + strand, within EX31_RS18680 at 316.502 kb on - strand, within EX31_RS18680 at 316.546 kb on - strand at 316.576 kb on - strand at 316.665 kb on + strand at 316.665 kb on + strand at 316.666 kb on - strand at 316.666 kb on - strand at 316.666 kb on - strand at 316.677 kb on + strand at 316.677 kb on + strand at 316.678 kb on - strand at 316.681 kb on + strand at 316.681 kb on + strand at 316.681 kb on + strand at 316.681 kb on + strand at 316.682 kb on - strand at 316.682 kb on - strand at 316.682 kb on - strand at 316.714 kb on - strand at 316.717 kb on - strand at 316.720 kb on - strand at 316.740 kb on - strand at 316.803 kb on - strand at 316.808 kb on + strand at 316.808 kb on + strand at 316.809 kb on - strand at 316.809 kb on - strand at 316.809 kb on - strand at 316.809 kb on - strand at 316.812 kb on + strand at 316.813 kb on - strand at 316.813 kb on - strand at 316.857 kb on - strand at 316.870 kb on - strand at 316.885 kb on + strand at 316.906 kb on - strand at 316.906 kb on - strand at 316.955 kb on - strand at 316.984 kb on + strand at 316.985 kb on - strand at 316.985 kb on - strand at 317.174 kb on + strand, within EX31_RS18685 at 317.174 kb on + strand, within EX31_RS18685 at 317.174 kb on + strand, within EX31_RS18685 at 317.175 kb on - strand, within EX31_RS18685 at 317.175 kb on - strand, within EX31_RS18685 at 317.175 kb on - strand, within EX31_RS18685 at 317.175 kb on - strand, within EX31_RS18685 at 317.352 kb on + strand, within EX31_RS18685 at 317.352 kb on + strand, within EX31_RS18685 at 317.352 kb on + strand, within EX31_RS18685 at 317.353 kb on - strand, within EX31_RS18685 at 317.353 kb on - strand, within EX31_RS18685 at 317.353 kb on - strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.357 kb on - strand, within EX31_RS18685 at 317.357 kb on - strand, within EX31_RS18685 at 317.357 kb on - strand, within EX31_RS18685 at 317.357 kb on - strand, within EX31_RS18685 at 317.357 kb on - strand, within EX31_RS18685 at 317.406 kb on + strand, within EX31_RS18685 at 317.407 kb on - strand, within EX31_RS18685 at 317.407 kb on - strand, within EX31_RS18685 at 317.462 kb on - strand, within EX31_RS18685 at 317.514 kb on + strand, within EX31_RS18685 at 317.515 kb on - strand, within EX31_RS18685 at 317.515 kb on - strand, within EX31_RS18685 at 317.515 kb on - strand, within EX31_RS18685 at 317.515 kb on - strand, within EX31_RS18685 at 317.515 kb on - strand, within EX31_RS18685 at 317.517 kb on + strand, within EX31_RS18685 at 317.518 kb on - strand, within EX31_RS18685 at 317.518 kb on - strand, within EX31_RS18685 at 317.518 kb on - strand, within EX31_RS18685 at 317.518 kb on - strand, within EX31_RS18685 at 317.566 kb on - strand, within EX31_RS18685 at 317.672 kb on - strand, within EX31_RS18685 at 317.799 kb on + strand, within EX31_RS18685 at 317.800 kb on - strand, within EX31_RS18685 at 317.800 kb on - strand, within EX31_RS18685 at 317.805 kb on + strand at 317.824 kb on + strand at 317.824 kb on + strand at 317.825 kb on - strand at 317.907 kb on - strand at 317.916 kb on + strand at 317.920 kb on + strand at 317.920 kb on + strand at 317.921 kb on - strand at 317.921 kb on - strand at 317.921 kb on - strand at 317.921 kb on - strand at 317.964 kb on + strand at 317.965 kb on - strand at 318.007 kb on + strand at 318.007 kb on + strand at 318.007 kb on + strand at 318.007 kb on + strand at 318.007 kb on + strand at 318.007 kb on + strand at 318.007 kb on + strand at 318.007 kb on + strand at 318.008 kb on - strand at 318.008 kb on - strand at 318.008 kb on - strand at 318.008 kb on - strand at 318.008 kb on - strand at 318.008 kb on - strand at 318.008 kb on - strand at 318.008 kb on - strand at 318.008 kb on - strand at 318.009 kb on + strand at 318.009 kb on + strand at 318.009 kb on + strand at 318.009 kb on + strand at 318.009 kb on + strand at 318.010 kb on - strand at 318.010 kb on - strand at 318.010 kb on - strand at 318.010 kb on - strand at 318.010 kb on - strand at 318.065 kb on - strand at 318.065 kb on - strand at 318.084 kb on + strand at 318.084 kb on + strand at 318.085 kb on - strand at 318.085 kb on - strand at 318.085 kb on - strand at 318.085 kb on - strand at 318.157 kb on + strand at 318.158 kb on - strand at 318.212 kb on + strand at 318.213 kb on - strand at 318.239 kb on + strand at 318.243 kb on + strand at 318.243 kb on + strand at 318.338 kb on - strand, within EX31_RS18690 at 318.446 kb on - strand, within EX31_RS18690 at 318.474 kb on - strand, within EX31_RS18690 at 318.474 kb on - strand, within EX31_RS18690 at 318.593 kb on - strand, within EX31_RS18690 at 318.644 kb on - strand, within EX31_RS18690 at 318.644 kb on - strand, within EX31_RS18690 at 318.644 kb on - strand, within EX31_RS18690 at 318.644 kb on - strand, within EX31_RS18690 at 318.711 kb on - strand, within EX31_RS18690 at 318.783 kb on - strand, within EX31_RS18690 at 318.869 kb on - strand, within EX31_RS18690 at 318.869 kb on - strand, within EX31_RS18690 at 318.888 kb on - strand, within EX31_RS18690 at 318.888 kb on - strand, within EX31_RS18690 at 318.888 kb on - strand, within EX31_RS18690 at 318.888 kb on - strand, within EX31_RS18690 at 318.892 kb on + strand, within EX31_RS18690 at 318.893 kb on - strand, within EX31_RS18690 at 318.893 kb on - strand, within EX31_RS18690
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 315,982 - EX31_RS18680 0.55 -2.0 315,982 - EX31_RS18680 0.55 +0.1 316,045 - EX31_RS18680 0.59 +0.8 316,053 + EX31_RS18680 0.59 +0.6 316,054 - EX31_RS18680 0.59 -0.6 316,054 - EX31_RS18680 0.59 -0.7 316,055 + EX31_RS18680 0.59 +0.2 316,055 + EX31_RS18680 0.59 -0.1 316,056 - EX31_RS18680 0.59 -0.7 316,056 - EX31_RS18680 0.59 -0.1 316,056 - EX31_RS18680 0.59 +0.7 316,056 - EX31_RS18680 0.59 +0.9 316,056 - EX31_RS18680 0.59 -1.1 316,056 - EX31_RS18680 0.59 -1.5 316,056 - EX31_RS18680 0.59 -0.4 316,087 - EX31_RS18680 0.61 +0.0 316,169 + EX31_RS18680 0.67 +0.3 316,286 + EX31_RS18680 0.74 -0.3 316,309 + EX31_RS18680 0.76 -0.5 316,309 + EX31_RS18680 0.76 +1.1 316,310 - EX31_RS18680 0.76 +0.1 316,376 - EX31_RS18680 0.80 +0.5 316,435 - EX31_RS18680 0.84 +0.8 316,435 - EX31_RS18680 0.84 +1.1 316,479 - EX31_RS18680 0.87 +0.0 316,479 - EX31_RS18680 0.87 -0.3 316,499 - EX31_RS18680 0.88 +0.8 316,501 + EX31_RS18680 0.88 -0.1 316,502 - EX31_RS18680 0.89 -2.2 316,546 - -1.1 316,576 - -0.2 316,665 + +0.9 316,665 + -0.0 316,666 - -0.3 316,666 - +0.3 316,666 - +0.2 316,677 + -0.9 316,677 + -0.2 316,678 - +0.6 316,681 + +0.5 316,681 + +0.4 316,681 + -0.1 316,681 + +2.2 316,682 - +0.4 316,682 - -0.1 316,682 - -0.3 316,714 - -0.1 316,717 - +0.2 316,720 - -0.1 316,740 - -0.9 316,803 - +0.4 316,808 + -0.1 316,808 + +0.1 316,809 - +0.6 316,809 - -0.2 316,809 - +0.3 316,809 - -0.6 316,812 + -0.9 316,813 - +0.0 316,813 - -0.9 316,857 - -0.4 316,870 - -0.7 316,885 + -0.1 316,906 - -0.4 316,906 - -0.4 316,955 - +0.4 316,984 + +0.7 316,985 - +0.6 316,985 - -0.1 317,174 + EX31_RS18685 0.27 -0.0 317,174 + EX31_RS18685 0.27 +0.6 317,174 + EX31_RS18685 0.27 -0.1 317,175 - EX31_RS18685 0.27 +0.2 317,175 - EX31_RS18685 0.27 -0.1 317,175 - EX31_RS18685 0.27 -0.2 317,175 - EX31_RS18685 0.27 -0.5 317,352 + EX31_RS18685 0.45 -0.1 317,352 + EX31_RS18685 0.45 +0.0 317,352 + EX31_RS18685 0.45 -1.1 317,353 - EX31_RS18685 0.45 +1.6 317,353 - EX31_RS18685 0.45 -0.3 317,353 - EX31_RS18685 0.45 +0.2 317,356 + EX31_RS18685 0.45 -0.4 317,356 + EX31_RS18685 0.45 -0.3 317,356 + EX31_RS18685 0.45 -0.2 317,356 + EX31_RS18685 0.45 +0.6 317,356 + EX31_RS18685 0.45 +0.7 317,356 + EX31_RS18685 0.45 +0.6 317,356 + EX31_RS18685 0.45 -0.3 317,357 - EX31_RS18685 0.45 -0.6 317,357 - EX31_RS18685 0.45 -1.4 317,357 - EX31_RS18685 0.45 +1.8 317,357 - EX31_RS18685 0.45 +0.7 317,357 - EX31_RS18685 0.45 +0.3 317,406 + EX31_RS18685 0.50 +0.4 317,407 - EX31_RS18685 0.50 -0.0 317,407 - EX31_RS18685 0.50 -0.4 317,462 - EX31_RS18685 0.56 -0.1 317,514 + EX31_RS18685 0.61 -2.1 317,515 - EX31_RS18685 0.61 -0.1 317,515 - EX31_RS18685 0.61 +0.7 317,515 - EX31_RS18685 0.61 +0.3 317,515 - EX31_RS18685 0.61 +0.8 317,515 - EX31_RS18685 0.61 +0.1 317,517 + EX31_RS18685 0.61 -0.9 317,518 - EX31_RS18685 0.61 +0.1 317,518 - EX31_RS18685 0.61 -2.3 317,518 - EX31_RS18685 0.61 +0.7 317,518 - EX31_RS18685 0.61 +0.2 317,566 - EX31_RS18685 0.66 +0.5 317,672 - EX31_RS18685 0.77 -0.6 317,799 + EX31_RS18685 0.90 -1.0 317,800 - EX31_RS18685 0.90 +0.7 317,800 - EX31_RS18685 0.90 +1.0 317,805 + -0.9 317,824 + -0.2 317,824 + +0.3 317,825 - +0.1 317,907 - +0.4 317,916 + +1.0 317,920 + -0.4 317,920 + +0.2 317,921 - -0.3 317,921 - +1.4 317,921 - +0.6 317,921 - +0.4 317,964 + -0.0 317,965 - +0.0 318,007 + +0.3 318,007 + +1.4 318,007 + -0.5 318,007 + -0.4 318,007 + -0.1 318,007 + +1.3 318,007 + +0.4 318,007 + +0.4 318,008 - -0.4 318,008 - -0.3 318,008 - -0.8 318,008 - -0.5 318,008 - -0.8 318,008 - -0.7 318,008 - -1.1 318,008 - -0.1 318,008 - +0.8 318,009 + +0.4 318,009 + +0.6 318,009 + -0.8 318,009 + +0.0 318,009 + -0.2 318,010 - +0.5 318,010 - -0.3 318,010 - -0.9 318,010 - -0.1 318,010 - -0.4 318,065 - -2.0 318,065 - +0.4 318,084 + +0.0 318,084 + -2.5 318,085 - +0.3 318,085 - +3.2 318,085 - -2.8 318,085 - -1.6 318,157 + -0.5 318,158 - +0.8 318,212 + +0.2 318,213 - +0.5 318,239 + -0.3 318,243 + +1.0 318,243 + +0.4 318,338 - EX31_RS18690 0.18 -0.0 318,446 - EX31_RS18690 0.28 -0.7 318,474 - EX31_RS18690 0.31 +0.9 318,474 - EX31_RS18690 0.31 +0.1 318,593 - EX31_RS18690 0.43 +0.2 318,644 - EX31_RS18690 0.48 +0.8 318,644 - EX31_RS18690 0.48 +0.2 318,644 - EX31_RS18690 0.48 +1.5 318,644 - EX31_RS18690 0.48 +1.4 318,711 - EX31_RS18690 0.54 +0.3 318,783 - EX31_RS18690 0.61 +0.9 318,869 - EX31_RS18690 0.69 -0.6 318,869 - EX31_RS18690 0.69 +0.5 318,888 - EX31_RS18690 0.71 -0.3 318,888 - EX31_RS18690 0.71 +2.7 318,888 - EX31_RS18690 0.71 -0.9 318,888 - EX31_RS18690 0.71 -1.4 318,892 + EX31_RS18690 0.72 +0.9 318,893 - EX31_RS18690 0.72 -0.1 318,893 - EX31_RS18690 0.72 +0.0
Or see this region's nucleotide sequence