Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17575 and EX31_RS17580 are separated by 10 nucleotides EX31_RS17580 and EX31_RS17585 overlap by 4 nucleotides EX31_RS17585 and EX31_RS17590 are separated by 137 nucleotides
EX31_RS17575: EX31_RS17575 - iron ABC transporter permease, at 68,651 to 70,339
_RS17575
EX31_RS17580: EX31_RS17580 - ABC transporter ATP-binding protein, at 70,350 to 71,045
_RS17580
EX31_RS17585: EX31_RS17585 - glutathione peroxidase, at 71,042 to 71,524
_RS17585
EX31_RS17590: EX31_RS17590 - thymidylate kinase, at 71,662 to 72,279
_RS17590
Position (kb) 70
71
72 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 69.386 kb on + strand, within EX31_RS17575 at 69.387 kb on - strand, within EX31_RS17575 at 69.387 kb on - strand, within EX31_RS17575 at 69.454 kb on + strand, within EX31_RS17575 at 69.454 kb on + strand, within EX31_RS17575 at 69.455 kb on - strand, within EX31_RS17575 at 69.543 kb on + strand, within EX31_RS17575 at 69.618 kb on + strand, within EX31_RS17575 at 69.624 kb on + strand, within EX31_RS17575 at 69.648 kb on + strand, within EX31_RS17575 at 69.648 kb on + strand, within EX31_RS17575 at 69.697 kb on + strand, within EX31_RS17575 at 69.697 kb on + strand, within EX31_RS17575 at 69.747 kb on + strand, within EX31_RS17575 at 69.784 kb on + strand, within EX31_RS17575 at 69.785 kb on - strand, within EX31_RS17575 at 69.832 kb on - strand, within EX31_RS17575 at 69.912 kb on + strand, within EX31_RS17575 at 69.912 kb on + strand, within EX31_RS17575 at 69.919 kb on + strand, within EX31_RS17575 at 69.930 kb on + strand, within EX31_RS17575 at 69.930 kb on + strand, within EX31_RS17575 at 70.123 kb on + strand, within EX31_RS17575 at 70.134 kb on + strand, within EX31_RS17575 at 70.134 kb on + strand, within EX31_RS17575 at 70.135 kb on - strand, within EX31_RS17575 at 70.135 kb on - strand, within EX31_RS17575 at 70.137 kb on + strand, within EX31_RS17575 at 70.137 kb on + strand, within EX31_RS17575 at 70.138 kb on - strand, within EX31_RS17575 at 70.138 kb on - strand, within EX31_RS17575 at 70.191 kb on + strand at 70.215 kb on + strand at 70.215 kb on + strand at 70.215 kb on + strand at 70.216 kb on - strand at 70.220 kb on + strand at 70.221 kb on - strand at 70.244 kb on + strand at 70.244 kb on + strand at 70.245 kb on - strand at 70.300 kb on + strand at 70.301 kb on - strand at 70.302 kb on + strand at 70.302 kb on + strand at 70.302 kb on + strand at 70.302 kb on + strand at 70.302 kb on + strand at 70.302 kb on + strand at 70.302 kb on + strand at 70.302 kb on + strand at 70.302 kb on + strand at 70.303 kb on - strand at 70.392 kb on + strand at 70.462 kb on + strand, within EX31_RS17580 at 70.542 kb on + strand, within EX31_RS17580 at 70.542 kb on + strand, within EX31_RS17580 at 70.623 kb on + strand, within EX31_RS17580 at 70.623 kb on + strand, within EX31_RS17580 at 70.623 kb on + strand, within EX31_RS17580 at 70.624 kb on - strand, within EX31_RS17580 at 70.740 kb on - strand, within EX31_RS17580 at 70.831 kb on + strand, within EX31_RS17580 at 70.831 kb on + strand, within EX31_RS17580 at 70.831 kb on + strand, within EX31_RS17580 at 70.832 kb on - strand, within EX31_RS17580 at 70.832 kb on - strand, within EX31_RS17580 at 70.832 kb on - strand, within EX31_RS17580 at 70.983 kb on + strand at 70.983 kb on + strand at 71.002 kb on - strand at 71.002 kb on - strand at 71.011 kb on + strand at 71.011 kb on + strand at 71.044 kb on - strand at 71.044 kb on - strand at 71.144 kb on - strand, within EX31_RS17585 at 71.144 kb on - strand, within EX31_RS17585 at 71.200 kb on - strand, within EX31_RS17585 at 71.200 kb on - strand, within EX31_RS17585 at 71.203 kb on + strand, within EX31_RS17585 at 71.203 kb on + strand, within EX31_RS17585 at 71.204 kb on - strand, within EX31_RS17585 at 71.219 kb on - strand, within EX31_RS17585 at 71.249 kb on + strand, within EX31_RS17585 at 71.268 kb on + strand, within EX31_RS17585 at 71.268 kb on + strand, within EX31_RS17585 at 71.269 kb on - strand, within EX31_RS17585 at 71.269 kb on - strand, within EX31_RS17585 at 71.371 kb on - strand, within EX31_RS17585 at 71.453 kb on - strand, within EX31_RS17585 at 71.461 kb on - strand, within EX31_RS17585 at 71.607 kb on + strand at 71.608 kb on - strand at 71.608 kb on - strand at 71.608 kb on - strand at 71.612 kb on + strand at 71.613 kb on - strand at 71.613 kb on - strand at 71.664 kb on - strand at 71.664 kb on - strand at 71.664 kb on - strand at 71.684 kb on + strand at 71.697 kb on + strand at 71.697 kb on + strand at 71.698 kb on - strand at 71.734 kb on - strand, within EX31_RS17590 at 71.741 kb on - strand, within EX31_RS17590 at 71.808 kb on + strand, within EX31_RS17590 at 71.809 kb on - strand, within EX31_RS17590 at 71.809 kb on - strand, within EX31_RS17590 at 71.809 kb on - strand, within EX31_RS17590 at 71.820 kb on + strand, within EX31_RS17590 at 71.821 kb on - strand, within EX31_RS17590 at 71.821 kb on - strand, within EX31_RS17590 at 71.823 kb on + strand, within EX31_RS17590 at 71.824 kb on - strand, within EX31_RS17590 at 71.824 kb on - strand, within EX31_RS17590 at 71.824 kb on - strand, within EX31_RS17590 at 71.824 kb on - strand, within EX31_RS17590 at 71.824 kb on - strand, within EX31_RS17590 at 71.824 kb on - strand, within EX31_RS17590 at 71.824 kb on - strand, within EX31_RS17590 at 71.824 kb on - strand, within EX31_RS17590 at 71.824 kb on - strand, within EX31_RS17590 at 71.827 kb on + strand, within EX31_RS17590 at 71.828 kb on - strand, within EX31_RS17590 at 71.866 kb on - strand, within EX31_RS17590 at 71.866 kb on - strand, within EX31_RS17590 at 71.926 kb on - strand, within EX31_RS17590 at 71.926 kb on - strand, within EX31_RS17590 at 71.926 kb on - strand, within EX31_RS17590 at 72.000 kb on + strand, within EX31_RS17590 at 72.000 kb on + strand, within EX31_RS17590 at 72.000 kb on + strand, within EX31_RS17590 at 72.001 kb on - strand, within EX31_RS17590 at 72.001 kb on - strand, within EX31_RS17590 at 72.001 kb on - strand, within EX31_RS17590 at 72.001 kb on - strand, within EX31_RS17590 at 72.001 kb on - strand, within EX31_RS17590
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 69,386 + EX31_RS17575 0.44 -1.4 69,387 - EX31_RS17575 0.44 +2.3 69,387 - EX31_RS17575 0.44 +0.2 69,454 + EX31_RS17575 0.48 -0.5 69,454 + EX31_RS17575 0.48 -1.1 69,455 - EX31_RS17575 0.48 +0.9 69,543 + EX31_RS17575 0.53 -0.4 69,618 + EX31_RS17575 0.57 -1.0 69,624 + EX31_RS17575 0.58 +1.6 69,648 + EX31_RS17575 0.59 +1.2 69,648 + EX31_RS17575 0.59 -0.1 69,697 + EX31_RS17575 0.62 +0.0 69,697 + EX31_RS17575 0.62 +1.0 69,747 + EX31_RS17575 0.65 -0.8 69,784 + EX31_RS17575 0.67 +0.4 69,785 - EX31_RS17575 0.67 +0.1 69,832 - EX31_RS17575 0.70 +0.6 69,912 + EX31_RS17575 0.75 +0.6 69,912 + EX31_RS17575 0.75 -0.4 69,919 + EX31_RS17575 0.75 +0.9 69,930 + EX31_RS17575 0.76 +0.3 69,930 + EX31_RS17575 0.76 -0.1 70,123 + EX31_RS17575 0.87 +0.0 70,134 + EX31_RS17575 0.88 -0.5 70,134 + EX31_RS17575 0.88 -0.1 70,135 - EX31_RS17575 0.88 -0.7 70,135 - EX31_RS17575 0.88 -2.0 70,137 + EX31_RS17575 0.88 -1.2 70,137 + EX31_RS17575 0.88 +0.3 70,138 - EX31_RS17575 0.88 -0.3 70,138 - EX31_RS17575 0.88 +1.4 70,191 + -2.3 70,215 + -1.7 70,215 + -0.5 70,215 + -0.8 70,216 - -0.9 70,220 + +0.7 70,221 - -0.9 70,244 + -0.6 70,244 + -0.9 70,245 - -2.6 70,300 + +1.0 70,301 - +2.4 70,302 + +0.4 70,302 + +0.2 70,302 + -0.6 70,302 + +2.5 70,302 + -0.4 70,302 + +1.4 70,302 + -0.3 70,302 + -0.5 70,302 + +0.2 70,303 - +0.9 70,392 + -0.2 70,462 + EX31_RS17580 0.16 +0.6 70,542 + EX31_RS17580 0.28 +0.6 70,542 + EX31_RS17580 0.28 +0.5 70,623 + EX31_RS17580 0.39 +0.3 70,623 + EX31_RS17580 0.39 +0.2 70,623 + EX31_RS17580 0.39 +0.7 70,624 - EX31_RS17580 0.39 +0.2 70,740 - EX31_RS17580 0.56 +1.0 70,831 + EX31_RS17580 0.69 +0.9 70,831 + EX31_RS17580 0.69 -0.4 70,831 + EX31_RS17580 0.69 +0.4 70,832 - EX31_RS17580 0.69 -1.0 70,832 - EX31_RS17580 0.69 +0.1 70,832 - EX31_RS17580 0.69 +0.0 70,983 + -0.1 70,983 + -0.8 71,002 - +0.3 71,002 - +0.5 71,011 + -0.7 71,011 + +0.2 71,044 - -0.1 71,044 - -0.8 71,144 - EX31_RS17585 0.21 +1.0 71,144 - EX31_RS17585 0.21 +1.6 71,200 - EX31_RS17585 0.33 -0.6 71,200 - EX31_RS17585 0.33 -2.3 71,203 + EX31_RS17585 0.33 +0.7 71,203 + EX31_RS17585 0.33 -0.3 71,204 - EX31_RS17585 0.34 +2.1 71,219 - EX31_RS17585 0.37 -0.2 71,249 + EX31_RS17585 0.43 -2.1 71,268 + EX31_RS17585 0.47 -0.6 71,268 + EX31_RS17585 0.47 +0.4 71,269 - EX31_RS17585 0.47 +0.1 71,269 - EX31_RS17585 0.47 -0.8 71,371 - EX31_RS17585 0.68 -0.0 71,453 - EX31_RS17585 0.85 -0.4 71,461 - EX31_RS17585 0.87 -0.4 71,607 + +0.2 71,608 - -2.0 71,608 - -0.2 71,608 - +0.5 71,612 + -1.0 71,613 - -0.3 71,613 - +1.6 71,664 - +0.4 71,664 - +0.3 71,664 - -0.0 71,684 + +0.1 71,697 + +2.2 71,697 + -1.4 71,698 - +0.3 71,734 - EX31_RS17590 0.12 -0.2 71,741 - EX31_RS17590 0.13 -0.6 71,808 + EX31_RS17590 0.24 -0.1 71,809 - EX31_RS17590 0.24 +0.3 71,809 - EX31_RS17590 0.24 -2.5 71,809 - EX31_RS17590 0.24 +0.1 71,820 + EX31_RS17590 0.26 +0.7 71,821 - EX31_RS17590 0.26 -1.2 71,821 - EX31_RS17590 0.26 +0.4 71,823 + EX31_RS17590 0.26 +0.1 71,824 - EX31_RS17590 0.26 -0.8 71,824 - EX31_RS17590 0.26 +0.3 71,824 - EX31_RS17590 0.26 +0.8 71,824 - EX31_RS17590 0.26 +0.7 71,824 - EX31_RS17590 0.26 +0.5 71,824 - EX31_RS17590 0.26 -0.7 71,824 - EX31_RS17590 0.26 -0.9 71,824 - EX31_RS17590 0.26 +0.8 71,824 - EX31_RS17590 0.26 -0.2 71,827 + EX31_RS17590 0.27 +0.2 71,828 - EX31_RS17590 0.27 -0.1 71,866 - EX31_RS17590 0.33 -3.3 71,866 - EX31_RS17590 0.33 +0.2 71,926 - EX31_RS17590 0.43 +0.7 71,926 - EX31_RS17590 0.43 +0.8 71,926 - EX31_RS17590 0.43 +0.4 72,000 + EX31_RS17590 0.55 +0.4 72,000 + EX31_RS17590 0.55 +1.5 72,000 + EX31_RS17590 0.55 -0.1 72,001 - EX31_RS17590 0.55 +0.1 72,001 - EX31_RS17590 0.55 -0.5 72,001 - EX31_RS17590 0.55 +0.4 72,001 - EX31_RS17590 0.55 -0.1 72,001 - EX31_RS17590 0.55 +0.7
Or see this region's nucleotide sequence