Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS15745 and EX31_RS15750 overlap by 14 nucleotides EX31_RS15750 and EX31_RS15755 are separated by 199 nucleotides EX31_RS15755 and EX31_RS15760 are separated by 22 nucleotides EX31_RS15760 and EX31_RS15765 are separated by 236 nucleotides
EX31_RS15745: EX31_RS15745 - hypothetical protein, at 1,276 to 1,935
_RS15745
EX31_RS15750: EX31_RS15750 - site-specific DNA-methyltransferase, at 1,922 to 2,647
_RS15750
EX31_RS15755: EX31_RS15755 - hypothetical protein, at 2,847 to 3,674
_RS15755
EX31_RS15760: EX31_RS15760 - hypothetical protein, at 3,697 to 4,281
_RS15760
EX31_RS15765: EX31_RS15765 - helix-turn-helix transcriptional regulator, at 4,518 to 4,895
_RS15765
Position (kb) 2
3
4 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1.856 kb on + strand, within EX31_RS15745 at 1.857 kb on - strand, within EX31_RS15745 at 1.936 kb on + strand at 1.946 kb on + strand at 1.946 kb on + strand at 1.963 kb on - strand at 1.973 kb on - strand at 1.974 kb on + strand at 1.975 kb on - strand at 1.975 kb on - strand at 1.979 kb on - strand at 2.014 kb on + strand, within EX31_RS15750 at 2.015 kb on - strand, within EX31_RS15750 at 2.015 kb on - strand, within EX31_RS15750 at 2.015 kb on - strand, within EX31_RS15750 at 2.030 kb on + strand, within EX31_RS15750 at 2.030 kb on + strand, within EX31_RS15750 at 2.033 kb on - strand, within EX31_RS15750 at 2.068 kb on - strand, within EX31_RS15750 at 2.076 kb on + strand, within EX31_RS15750 at 2.080 kb on + strand, within EX31_RS15750 at 2.083 kb on + strand, within EX31_RS15750 at 2.106 kb on + strand, within EX31_RS15750 at 2.116 kb on + strand, within EX31_RS15750 at 2.116 kb on + strand, within EX31_RS15750 at 2.183 kb on + strand, within EX31_RS15750 at 2.208 kb on - strand, within EX31_RS15750 at 2.266 kb on + strand, within EX31_RS15750 at 2.266 kb on + strand, within EX31_RS15750 at 2.267 kb on - strand, within EX31_RS15750 at 2.268 kb on + strand, within EX31_RS15750 at 2.268 kb on + strand, within EX31_RS15750 at 2.268 kb on + strand, within EX31_RS15750 at 2.268 kb on + strand, within EX31_RS15750 at 2.269 kb on - strand, within EX31_RS15750 at 2.269 kb on - strand, within EX31_RS15750 at 2.269 kb on - strand, within EX31_RS15750 at 2.269 kb on - strand, within EX31_RS15750 at 2.269 kb on - strand, within EX31_RS15750 at 2.346 kb on + strand, within EX31_RS15750 at 2.351 kb on + strand, within EX31_RS15750 at 2.351 kb on + strand, within EX31_RS15750 at 2.351 kb on + strand, within EX31_RS15750 at 2.351 kb on + strand, within EX31_RS15750 at 2.351 kb on + strand, within EX31_RS15750 at 2.352 kb on - strand, within EX31_RS15750 at 2.353 kb on + strand, within EX31_RS15750 at 2.353 kb on + strand, within EX31_RS15750 at 2.354 kb on - strand, within EX31_RS15750 at 2.354 kb on - strand, within EX31_RS15750 at 2.354 kb on - strand, within EX31_RS15750 at 2.354 kb on - strand, within EX31_RS15750 at 2.453 kb on + strand, within EX31_RS15750 at 2.455 kb on + strand, within EX31_RS15750 at 2.458 kb on - strand, within EX31_RS15750 at 2.491 kb on + strand, within EX31_RS15750 at 2.493 kb on + strand, within EX31_RS15750 at 2.493 kb on + strand, within EX31_RS15750 at 2.493 kb on + strand, within EX31_RS15750 at 2.493 kb on + strand, within EX31_RS15750 at 2.494 kb on - strand, within EX31_RS15750 at 2.494 kb on - strand, within EX31_RS15750 at 2.494 kb on - strand, within EX31_RS15750 at 2.494 kb on - strand, within EX31_RS15750 at 2.496 kb on + strand, within EX31_RS15750 at 2.506 kb on + strand, within EX31_RS15750 at 2.507 kb on - strand, within EX31_RS15750 at 2.507 kb on - strand, within EX31_RS15750 at 2.535 kb on + strand, within EX31_RS15750 at 2.535 kb on + strand, within EX31_RS15750 at 2.535 kb on + strand, within EX31_RS15750 at 2.536 kb on - strand, within EX31_RS15750 at 2.536 kb on - strand, within EX31_RS15750 at 2.554 kb on + strand, within EX31_RS15750 at 2.572 kb on + strand, within EX31_RS15750 at 2.585 kb on + strand at 2.830 kb on + strand at 2.833 kb on - strand at 2.875 kb on + strand at 2.905 kb on - strand at 2.946 kb on - strand, within EX31_RS15755 at 3.137 kb on - strand, within EX31_RS15755 at 3.263 kb on + strand, within EX31_RS15755 at 3.283 kb on - strand, within EX31_RS15755 at 3.300 kb on - strand, within EX31_RS15755 at 3.303 kb on + strand, within EX31_RS15755 at 3.305 kb on + strand, within EX31_RS15755 at 3.320 kb on + strand, within EX31_RS15755 at 3.321 kb on - strand, within EX31_RS15755 at 3.389 kb on - strand, within EX31_RS15755 at 3.402 kb on - strand, within EX31_RS15755 at 3.502 kb on - strand, within EX31_RS15755 at 3.506 kb on + strand, within EX31_RS15755 at 3.509 kb on - strand, within EX31_RS15755 at 3.545 kb on + strand, within EX31_RS15755 at 3.610 kb on + strand at 3.611 kb on - strand at 3.732 kb on - strand at 3.736 kb on - strand at 3.743 kb on - strand at 3.743 kb on - strand at 3.744 kb on + strand at 3.744 kb on + strand at 3.744 kb on + strand at 3.744 kb on + strand at 3.745 kb on - strand at 3.745 kb on - strand at 3.745 kb on - strand at 3.747 kb on - strand at 3.766 kb on - strand, within EX31_RS15760 at 3.812 kb on - strand, within EX31_RS15760 at 3.812 kb on - strand, within EX31_RS15760 at 3.830 kb on - strand, within EX31_RS15760 at 3.830 kb on - strand, within EX31_RS15760 at 3.886 kb on - strand, within EX31_RS15760 at 3.981 kb on + strand, within EX31_RS15760 at 3.981 kb on + strand, within EX31_RS15760 at 3.987 kb on + strand, within EX31_RS15760 at 3.987 kb on + strand, within EX31_RS15760 at 3.997 kb on + strand, within EX31_RS15760 at 4.083 kb on + strand, within EX31_RS15760 at 4.087 kb on - strand, within EX31_RS15760 at 4.087 kb on - strand, within EX31_RS15760 at 4.087 kb on - strand, within EX31_RS15760 at 4.100 kb on - strand, within EX31_RS15760 at 4.206 kb on + strand, within EX31_RS15760 at 4.229 kb on + strand at 4.230 kb on - strand at 4.230 kb on - strand at 4.230 kb on - strand at 4.230 kb on - strand at 4.231 kb on + strand at 4.231 kb on + strand at 4.231 kb on + strand at 4.231 kb on + strand at 4.231 kb on + strand at 4.232 kb on - strand at 4.232 kb on - strand at 4.232 kb on - strand at 4.234 kb on - strand at 4.257 kb on + strand at 4.258 kb on - strand at 4.260 kb on + strand at 4.260 kb on + strand at 4.260 kb on + strand at 4.261 kb on - strand at 4.261 kb on - strand at 4.261 kb on - strand at 4.264 kb on + strand at 4.311 kb on - strand at 4.328 kb on - strand at 4.386 kb on + strand at 4.414 kb on + strand at 4.435 kb on - strand at 4.435 kb on - strand at 4.435 kb on - strand at 4.457 kb on - strand at 4.487 kb on + strand at 4.488 kb on - strand at 4.488 kb on - strand at 4.497 kb on + strand at 4.497 kb on + strand at 4.498 kb on - strand at 4.515 kb on + strand at 4.515 kb on + strand at 4.516 kb on - strand at 4.528 kb on + strand at 4.528 kb on + strand at 4.528 kb on + strand at 4.529 kb on - strand at 4.541 kb on + strand at 4.541 kb on + strand at 4.541 kb on + strand at 4.547 kb on + strand at 4.548 kb on - strand at 4.548 kb on - strand at 4.548 kb on - strand at 4.565 kb on + strand, within EX31_RS15765 at 4.565 kb on + strand, within EX31_RS15765 at 4.565 kb on + strand, within EX31_RS15765 at 4.565 kb on + strand, within EX31_RS15765 at 4.565 kb on + strand, within EX31_RS15765 at 4.565 kb on + strand, within EX31_RS15765 at 4.565 kb on + strand, within EX31_RS15765 at 4.565 kb on + strand, within EX31_RS15765 at 4.565 kb on + strand, within EX31_RS15765 at 4.565 kb on + strand, within EX31_RS15765 at 4.565 kb on + strand, within EX31_RS15765 at 4.565 kb on + strand, within EX31_RS15765 at 4.565 kb on + strand, within EX31_RS15765 at 4.565 kb on + strand, within EX31_RS15765 at 4.565 kb on + strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.566 kb on - strand, within EX31_RS15765 at 4.567 kb on + strand, within EX31_RS15765 at 4.567 kb on + strand, within EX31_RS15765 at 4.568 kb on - strand, within EX31_RS15765 at 4.568 kb on - strand, within EX31_RS15765 at 4.605 kb on + strand, within EX31_RS15765 at 4.605 kb on + strand, within EX31_RS15765 at 4.625 kb on + strand, within EX31_RS15765 at 4.625 kb on + strand, within EX31_RS15765 at 4.625 kb on + strand, within EX31_RS15765 at 4.664 kb on + strand, within EX31_RS15765 at 4.668 kb on - strand, within EX31_RS15765 at 4.668 kb on - strand, within EX31_RS15765
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 1,856 + EX31_RS15745 0.88 -0.1 1,857 - EX31_RS15745 0.88 -0.8 1,936 + -0.4 1,946 + +0.5 1,946 + -0.1 1,963 - -0.6 1,973 - +1.1 1,974 + +0.6 1,975 - +1.9 1,975 - -0.4 1,979 - +0.8 2,014 + EX31_RS15750 0.13 +0.3 2,015 - EX31_RS15750 0.13 +0.5 2,015 - EX31_RS15750 0.13 +0.3 2,015 - EX31_RS15750 0.13 -0.2 2,030 + EX31_RS15750 0.15 -0.4 2,030 + EX31_RS15750 0.15 -0.8 2,033 - EX31_RS15750 0.15 -0.0 2,068 - EX31_RS15750 0.20 +0.7 2,076 + EX31_RS15750 0.21 +1.5 2,080 + EX31_RS15750 0.22 +0.7 2,083 + EX31_RS15750 0.22 +0.4 2,106 + EX31_RS15750 0.25 -0.0 2,116 + EX31_RS15750 0.27 +0.2 2,116 + EX31_RS15750 0.27 +0.2 2,183 + EX31_RS15750 0.36 -0.1 2,208 - EX31_RS15750 0.39 -0.8 2,266 + EX31_RS15750 0.47 -1.8 2,266 + EX31_RS15750 0.47 -0.7 2,267 - EX31_RS15750 0.48 +0.1 2,268 + EX31_RS15750 0.48 -0.1 2,268 + EX31_RS15750 0.48 +0.1 2,268 + EX31_RS15750 0.48 +0.1 2,268 + EX31_RS15750 0.48 -0.4 2,269 - EX31_RS15750 0.48 -0.1 2,269 - EX31_RS15750 0.48 +0.4 2,269 - EX31_RS15750 0.48 -1.3 2,269 - EX31_RS15750 0.48 +1.0 2,269 - EX31_RS15750 0.48 +0.6 2,346 + EX31_RS15750 0.58 +0.5 2,351 + EX31_RS15750 0.59 +0.9 2,351 + EX31_RS15750 0.59 +0.0 2,351 + EX31_RS15750 0.59 -0.8 2,351 + EX31_RS15750 0.59 +0.5 2,351 + EX31_RS15750 0.59 -0.1 2,352 - EX31_RS15750 0.59 +0.9 2,353 + EX31_RS15750 0.59 +0.2 2,353 + EX31_RS15750 0.59 +0.9 2,354 - EX31_RS15750 0.60 +1.0 2,354 - EX31_RS15750 0.60 +0.7 2,354 - EX31_RS15750 0.60 +0.5 2,354 - EX31_RS15750 0.60 +0.0 2,453 + EX31_RS15750 0.73 -1.1 2,455 + EX31_RS15750 0.73 +0.5 2,458 - EX31_RS15750 0.74 -0.6 2,491 + EX31_RS15750 0.78 +0.1 2,493 + EX31_RS15750 0.79 -0.0 2,493 + EX31_RS15750 0.79 -1.6 2,493 + EX31_RS15750 0.79 +1.0 2,493 + EX31_RS15750 0.79 -2.0 2,494 - EX31_RS15750 0.79 -2.3 2,494 - EX31_RS15750 0.79 +0.3 2,494 - EX31_RS15750 0.79 +0.8 2,494 - EX31_RS15750 0.79 -1.0 2,496 + EX31_RS15750 0.79 +0.4 2,506 + EX31_RS15750 0.80 -0.9 2,507 - EX31_RS15750 0.81 -0.5 2,507 - EX31_RS15750 0.81 -0.0 2,535 + EX31_RS15750 0.84 +1.4 2,535 + EX31_RS15750 0.84 -0.2 2,535 + EX31_RS15750 0.84 +0.6 2,536 - EX31_RS15750 0.85 -0.6 2,536 - EX31_RS15750 0.85 +0.2 2,554 + EX31_RS15750 0.87 +0.7 2,572 + EX31_RS15750 0.90 -0.6 2,585 + +1.1 2,830 + -0.4 2,833 - -0.7 2,875 + +1.5 2,905 - +0.7 2,946 - EX31_RS15755 0.12 -0.3 3,137 - EX31_RS15755 0.35 +0.2 3,263 + EX31_RS15755 0.50 +0.3 3,283 - EX31_RS15755 0.53 +0.3 3,300 - EX31_RS15755 0.55 -0.8 3,303 + EX31_RS15755 0.55 +0.5 3,305 + EX31_RS15755 0.55 -0.6 3,320 + EX31_RS15755 0.57 -0.6 3,321 - EX31_RS15755 0.57 -0.9 3,389 - EX31_RS15755 0.65 +1.4 3,402 - EX31_RS15755 0.67 +0.2 3,502 - EX31_RS15755 0.79 -0.0 3,506 + EX31_RS15755 0.80 -0.1 3,509 - EX31_RS15755 0.80 +0.5 3,545 + EX31_RS15755 0.84 +0.4 3,610 + +0.7 3,611 - +0.3 3,732 - -0.0 3,736 - -2.2 3,743 - +1.2 3,743 - +0.3 3,744 + -1.1 3,744 + +0.3 3,744 + +0.5 3,744 + -0.3 3,745 - +0.2 3,745 - +1.0 3,745 - +0.1 3,747 - +0.8 3,766 - EX31_RS15760 0.12 -0.8 3,812 - EX31_RS15760 0.20 +0.2 3,812 - EX31_RS15760 0.20 -0.6 3,830 - EX31_RS15760 0.23 +0.5 3,830 - EX31_RS15760 0.23 -0.4 3,886 - EX31_RS15760 0.32 -0.3 3,981 + EX31_RS15760 0.49 +0.5 3,981 + EX31_RS15760 0.49 -1.3 3,987 + EX31_RS15760 0.50 -0.7 3,987 + EX31_RS15760 0.50 -1.3 3,997 + EX31_RS15760 0.51 +0.6 4,083 + EX31_RS15760 0.66 +0.4 4,087 - EX31_RS15760 0.67 -0.2 4,087 - EX31_RS15760 0.67 -1.4 4,087 - EX31_RS15760 0.67 -0.1 4,100 - EX31_RS15760 0.69 -0.9 4,206 + EX31_RS15760 0.87 -1.5 4,229 + -0.1 4,230 - +0.6 4,230 - -0.7 4,230 - -0.3 4,230 - -0.2 4,231 + +0.2 4,231 + -0.4 4,231 + -0.9 4,231 + +0.0 4,231 + +0.7 4,232 - -0.4 4,232 - +0.3 4,232 - -1.9 4,234 - +0.6 4,257 + +0.5 4,258 - +0.2 4,260 + +0.7 4,260 + +0.0 4,260 + +1.1 4,261 - +0.8 4,261 - +0.8 4,261 - +1.0 4,264 + -0.1 4,311 - +0.9 4,328 - +0.1 4,386 + +0.0 4,414 + -0.8 4,435 - -0.2 4,435 - -0.4 4,435 - +0.1 4,457 - -0.7 4,487 + -0.9 4,488 - +0.7 4,488 - -0.6 4,497 + -0.5 4,497 + -0.4 4,498 - +0.1 4,515 + +0.0 4,515 + -0.5 4,516 - +0.1 4,528 + +0.7 4,528 + +0.4 4,528 + -0.2 4,529 - -0.3 4,541 + +0.1 4,541 + -0.5 4,541 + +0.6 4,547 + -1.6 4,548 - -0.4 4,548 - +1.0 4,548 - +0.6 4,565 + EX31_RS15765 0.12 +0.3 4,565 + EX31_RS15765 0.12 -0.2 4,565 + EX31_RS15765 0.12 -0.2 4,565 + EX31_RS15765 0.12 +0.2 4,565 + EX31_RS15765 0.12 +0.8 4,565 + EX31_RS15765 0.12 -0.2 4,565 + EX31_RS15765 0.12 +0.2 4,565 + EX31_RS15765 0.12 +0.1 4,565 + EX31_RS15765 0.12 +0.2 4,565 + EX31_RS15765 0.12 -0.2 4,565 + EX31_RS15765 0.12 +0.4 4,565 + EX31_RS15765 0.12 +0.3 4,565 + EX31_RS15765 0.12 -0.6 4,565 + EX31_RS15765 0.12 -0.6 4,565 + EX31_RS15765 0.12 -0.4 4,566 - EX31_RS15765 0.13 -0.1 4,566 - EX31_RS15765 0.13 +0.4 4,566 - EX31_RS15765 0.13 +1.0 4,566 - EX31_RS15765 0.13 -0.4 4,566 - EX31_RS15765 0.13 -1.2 4,566 - EX31_RS15765 0.13 +0.7 4,566 - EX31_RS15765 0.13 -0.1 4,566 - EX31_RS15765 0.13 +0.7 4,566 - EX31_RS15765 0.13 +1.0 4,566 - EX31_RS15765 0.13 +0.9 4,566 - EX31_RS15765 0.13 -0.8 4,566 - EX31_RS15765 0.13 -2.0 4,566 - EX31_RS15765 0.13 -0.0 4,566 - EX31_RS15765 0.13 -0.2 4,566 - EX31_RS15765 0.13 +0.6 4,566 - EX31_RS15765 0.13 +0.2 4,566 - EX31_RS15765 0.13 -0.4 4,566 - EX31_RS15765 0.13 -0.1 4,567 + EX31_RS15765 0.13 +0.3 4,567 + EX31_RS15765 0.13 -0.0 4,568 - EX31_RS15765 0.13 +0.1 4,568 - EX31_RS15765 0.13 +0.4 4,605 + EX31_RS15765 0.23 +0.4 4,605 + EX31_RS15765 0.23 -0.5 4,625 + EX31_RS15765 0.28 -0.3 4,625 + EX31_RS15765 0.28 +0.5 4,625 + EX31_RS15765 0.28 -0.8 4,664 + EX31_RS15765 0.39 -0.5 4,668 - EX31_RS15765 0.40 +0.9 4,668 - EX31_RS15765 0.40 +0.2
Or see this region's nucleotide sequence