Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS14820 and EX31_RS14825 overlap by 1 nucleotides EX31_RS14825 and EX31_RS14830 are separated by 5 nucleotides
EX31_RS14820: EX31_RS14820 - cell division protein FtsX, at 56,477 to 57,457
_RS14820
EX31_RS14825: EX31_RS14825 - cell division ATP-binding protein FtsE, at 57,457 to 58,119
_RS14825
EX31_RS14830: EX31_RS14830 - signal recognition particle-docking protein FtsY, at 58,125 to 59,606
_RS14830
Position (kb) 57
58
59 Strain fitness (log2 ratio) -1
0
1
2
3 at 56.462 kb on + strand at 56.462 kb on + strand at 56.462 kb on + strand at 56.462 kb on + strand at 56.462 kb on + strand at 56.463 kb on - strand at 56.463 kb on - strand at 56.463 kb on - strand at 56.463 kb on - strand at 56.463 kb on - strand at 56.463 kb on - strand at 56.463 kb on - strand at 56.463 kb on - strand at 56.464 kb on + strand at 56.465 kb on - strand at 56.465 kb on - strand at 56.465 kb on - strand at 56.479 kb on - strand at 56.479 kb on - strand at 56.488 kb on + strand at 56.489 kb on - strand at 56.498 kb on + strand at 56.498 kb on + strand at 56.499 kb on - strand at 56.561 kb on + strand at 56.561 kb on + strand at 56.561 kb on + strand at 56.562 kb on - strand at 56.734 kb on + strand, within EX31_RS14820 at 56.734 kb on + strand, within EX31_RS14820 at 56.735 kb on - strand, within EX31_RS14820 at 56.756 kb on + strand, within EX31_RS14820 at 56.756 kb on + strand, within EX31_RS14820 at 56.756 kb on + strand, within EX31_RS14820 at 56.756 kb on + strand, within EX31_RS14820 at 56.757 kb on - strand, within EX31_RS14820 at 56.757 kb on - strand, within EX31_RS14820 at 56.757 kb on - strand, within EX31_RS14820 at 56.757 kb on - strand, within EX31_RS14820 at 56.757 kb on - strand, within EX31_RS14820 at 56.812 kb on + strand, within EX31_RS14820 at 56.812 kb on + strand, within EX31_RS14820 at 56.812 kb on + strand, within EX31_RS14820 at 56.813 kb on - strand, within EX31_RS14820 at 56.813 kb on - strand, within EX31_RS14820 at 56.942 kb on + strand, within EX31_RS14820 at 56.942 kb on + strand, within EX31_RS14820 at 56.943 kb on - strand, within EX31_RS14820 at 56.943 kb on - strand, within EX31_RS14820 at 56.943 kb on - strand, within EX31_RS14820 at 56.943 kb on - strand, within EX31_RS14820 at 56.943 kb on - strand, within EX31_RS14820 at 56.943 kb on - strand, within EX31_RS14820 at 56.943 kb on - strand, within EX31_RS14820 at 56.943 kb on - strand, within EX31_RS14820 at 56.943 kb on - strand, within EX31_RS14820 at 57.001 kb on + strand, within EX31_RS14820 at 57.002 kb on - strand, within EX31_RS14820 at 57.046 kb on + strand, within EX31_RS14820 at 57.047 kb on - strand, within EX31_RS14820 at 57.047 kb on - strand, within EX31_RS14820 at 57.047 kb on - strand, within EX31_RS14820 at 57.047 kb on - strand, within EX31_RS14820 at 57.111 kb on + strand, within EX31_RS14820 at 57.111 kb on + strand, within EX31_RS14820 at 57.111 kb on + strand, within EX31_RS14820 at 57.111 kb on + strand, within EX31_RS14820 at 57.111 kb on + strand, within EX31_RS14820 at 57.111 kb on + strand, within EX31_RS14820 at 57.112 kb on - strand, within EX31_RS14820 at 57.112 kb on - strand, within EX31_RS14820 at 57.112 kb on - strand, within EX31_RS14820 at 57.112 kb on - strand, within EX31_RS14820 at 57.112 kb on - strand, within EX31_RS14820 at 57.112 kb on - strand, within EX31_RS14820 at 57.112 kb on - strand, within EX31_RS14820 at 57.115 kb on + strand, within EX31_RS14820 at 57.115 kb on + strand, within EX31_RS14820 at 57.115 kb on + strand, within EX31_RS14820 at 57.115 kb on + strand, within EX31_RS14820 at 57.115 kb on + strand, within EX31_RS14820 at 57.115 kb on + strand, within EX31_RS14820 at 57.115 kb on + strand, within EX31_RS14820 at 57.115 kb on + strand, within EX31_RS14820 at 57.115 kb on + strand, within EX31_RS14820 at 57.116 kb on - strand, within EX31_RS14820 at 57.116 kb on - strand, within EX31_RS14820 at 57.116 kb on - strand, within EX31_RS14820 at 57.116 kb on - strand, within EX31_RS14820 at 57.116 kb on - strand, within EX31_RS14820 at 57.116 kb on - strand, within EX31_RS14820 at 57.116 kb on - strand, within EX31_RS14820 at 57.195 kb on + strand, within EX31_RS14820 at 57.195 kb on + strand, within EX31_RS14820 at 57.196 kb on - strand, within EX31_RS14820 at 57.196 kb on - strand, within EX31_RS14820 at 57.239 kb on - strand, within EX31_RS14820 at 57.261 kb on + strand, within EX31_RS14820 at 57.261 kb on + strand, within EX31_RS14820 at 57.262 kb on - strand, within EX31_RS14820 at 57.262 kb on - strand, within EX31_RS14820 at 57.296 kb on + strand, within EX31_RS14820 at 57.296 kb on + strand, within EX31_RS14820 at 57.297 kb on - strand, within EX31_RS14820 at 57.297 kb on - strand, within EX31_RS14820 at 57.297 kb on - strand, within EX31_RS14820 at 57.363 kb on + strand at 57.364 kb on - strand at 57.401 kb on - strand at 57.433 kb on + strand at 57.458 kb on + strand at 57.459 kb on - strand at 57.459 kb on - strand at 57.459 kb on - strand at 57.459 kb on - strand at 57.461 kb on + strand at 57.461 kb on + strand at 57.461 kb on + strand at 57.461 kb on + strand at 57.461 kb on + strand at 57.461 kb on + strand at 57.461 kb on + strand at 57.461 kb on + strand at 57.461 kb on + strand at 57.462 kb on - strand at 57.462 kb on - strand at 57.462 kb on - strand at 57.462 kb on - strand at 57.462 kb on - strand at 57.462 kb on - strand at 57.462 kb on - strand at 57.462 kb on - strand at 57.462 kb on - strand at 57.462 kb on - strand at 57.462 kb on - strand at 57.462 kb on - strand at 57.462 kb on - strand at 57.462 kb on - strand at 57.477 kb on + strand at 57.477 kb on + strand at 57.477 kb on + strand at 57.477 kb on + strand at 57.477 kb on + strand at 57.477 kb on + strand at 57.477 kb on + strand at 57.477 kb on + strand at 57.477 kb on + strand at 57.478 kb on - strand at 57.478 kb on - strand at 57.478 kb on - strand at 57.478 kb on - strand at 57.478 kb on - strand at 57.478 kb on - strand at 57.478 kb on - strand at 57.478 kb on - strand at 57.478 kb on - strand at 57.507 kb on - strand at 57.507 kb on - strand at 57.510 kb on + strand at 57.511 kb on - strand at 57.740 kb on - strand, within EX31_RS14825 at 57.740 kb on - strand, within EX31_RS14825 at 57.751 kb on - strand, within EX31_RS14825 at 57.830 kb on + strand, within EX31_RS14825 at 57.830 kb on + strand, within EX31_RS14825 at 57.831 kb on - strand, within EX31_RS14825 at 57.831 kb on - strand, within EX31_RS14825 at 57.831 kb on - strand, within EX31_RS14825 at 57.831 kb on - strand, within EX31_RS14825 at 57.837 kb on + strand, within EX31_RS14825 at 57.837 kb on + strand, within EX31_RS14825 at 57.837 kb on + strand, within EX31_RS14825 at 57.838 kb on - strand, within EX31_RS14825 at 57.967 kb on + strand, within EX31_RS14825 at 57.967 kb on + strand, within EX31_RS14825 at 57.967 kb on + strand, within EX31_RS14825 at 57.968 kb on - strand, within EX31_RS14825 at 57.968 kb on - strand, within EX31_RS14825 at 57.968 kb on - strand, within EX31_RS14825 at 57.968 kb on - strand, within EX31_RS14825 at 58.089 kb on - strand at 58.089 kb on - strand at 58.089 kb on - strand at 58.095 kb on + strand at 58.096 kb on - strand at 58.123 kb on + strand at 58.123 kb on + strand at 58.124 kb on - strand at 58.124 kb on - strand at 58.124 kb on - strand at 58.126 kb on + strand at 58.126 kb on + strand at 58.126 kb on + strand at 58.127 kb on - strand at 58.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 56,462 + -0.1 56,462 + +0.3 56,462 + -0.1 56,462 + -0.3 56,462 + -0.0 56,463 - +0.2 56,463 - -0.3 56,463 - -0.1 56,463 - -0.5 56,463 - -0.0 56,463 - +0.2 56,463 - -0.2 56,463 - +0.8 56,464 + +0.0 56,465 - +0.0 56,465 - -0.6 56,465 - -0.1 56,479 - +0.1 56,479 - +0.2 56,488 + +0.7 56,489 - -0.5 56,498 + +0.9 56,498 + -0.9 56,499 - -0.4 56,561 + +0.9 56,561 + -0.4 56,561 + +0.7 56,562 - -0.2 56,734 + EX31_RS14820 0.26 +0.7 56,734 + EX31_RS14820 0.26 +0.7 56,735 - EX31_RS14820 0.26 +0.9 56,756 + EX31_RS14820 0.28 +0.1 56,756 + EX31_RS14820 0.28 -0.6 56,756 + EX31_RS14820 0.28 +0.8 56,756 + EX31_RS14820 0.28 +0.9 56,757 - EX31_RS14820 0.29 +0.3 56,757 - EX31_RS14820 0.29 +0.1 56,757 - EX31_RS14820 0.29 +0.7 56,757 - EX31_RS14820 0.29 -0.0 56,757 - EX31_RS14820 0.29 +0.2 56,812 + EX31_RS14820 0.34 +0.2 56,812 + EX31_RS14820 0.34 -0.3 56,812 + EX31_RS14820 0.34 +0.4 56,813 - EX31_RS14820 0.34 +0.7 56,813 - EX31_RS14820 0.34 +0.4 56,942 + EX31_RS14820 0.47 +0.7 56,942 + EX31_RS14820 0.47 +0.8 56,943 - EX31_RS14820 0.48 -0.5 56,943 - EX31_RS14820 0.48 +0.1 56,943 - EX31_RS14820 0.48 +0.4 56,943 - EX31_RS14820 0.48 +0.4 56,943 - EX31_RS14820 0.48 +0.3 56,943 - EX31_RS14820 0.48 +1.4 56,943 - EX31_RS14820 0.48 +0.3 56,943 - EX31_RS14820 0.48 +0.7 56,943 - EX31_RS14820 0.48 +0.3 57,001 + EX31_RS14820 0.53 -0.6 57,002 - EX31_RS14820 0.54 +0.3 57,046 + EX31_RS14820 0.58 +0.8 57,047 - EX31_RS14820 0.58 +0.2 57,047 - EX31_RS14820 0.58 -0.1 57,047 - EX31_RS14820 0.58 -0.3 57,047 - EX31_RS14820 0.58 +0.1 57,111 + EX31_RS14820 0.65 +0.8 57,111 + EX31_RS14820 0.65 +0.7 57,111 + EX31_RS14820 0.65 +0.6 57,111 + EX31_RS14820 0.65 +0.9 57,111 + EX31_RS14820 0.65 -1.2 57,111 + EX31_RS14820 0.65 +1.0 57,112 - EX31_RS14820 0.65 -0.6 57,112 - EX31_RS14820 0.65 +0.6 57,112 - EX31_RS14820 0.65 +0.2 57,112 - EX31_RS14820 0.65 -0.4 57,112 - EX31_RS14820 0.65 +0.1 57,112 - EX31_RS14820 0.65 -1.1 57,112 - EX31_RS14820 0.65 +0.8 57,115 + EX31_RS14820 0.65 +1.5 57,115 + EX31_RS14820 0.65 -0.4 57,115 + EX31_RS14820 0.65 +0.4 57,115 + EX31_RS14820 0.65 +1.6 57,115 + EX31_RS14820 0.65 +0.1 57,115 + EX31_RS14820 0.65 +0.0 57,115 + EX31_RS14820 0.65 +0.7 57,115 + EX31_RS14820 0.65 -0.3 57,115 + EX31_RS14820 0.65 +0.8 57,116 - EX31_RS14820 0.65 -0.1 57,116 - EX31_RS14820 0.65 +0.9 57,116 - EX31_RS14820 0.65 +0.9 57,116 - EX31_RS14820 0.65 +0.4 57,116 - EX31_RS14820 0.65 +0.5 57,116 - EX31_RS14820 0.65 +0.5 57,116 - EX31_RS14820 0.65 -0.2 57,195 + EX31_RS14820 0.73 +0.9 57,195 + EX31_RS14820 0.73 +0.1 57,196 - EX31_RS14820 0.73 +0.8 57,196 - EX31_RS14820 0.73 -0.1 57,239 - EX31_RS14820 0.78 +0.4 57,261 + EX31_RS14820 0.80 -0.3 57,261 + EX31_RS14820 0.80 +0.3 57,262 - EX31_RS14820 0.80 +0.3 57,262 - EX31_RS14820 0.80 +0.2 57,296 + EX31_RS14820 0.83 -0.2 57,296 + EX31_RS14820 0.83 +0.5 57,297 - EX31_RS14820 0.84 +0.8 57,297 - EX31_RS14820 0.84 -0.3 57,297 - EX31_RS14820 0.84 +0.4 57,363 + +0.0 57,364 - +0.6 57,401 - +0.1 57,433 + +1.0 57,458 + +0.5 57,459 - +0.6 57,459 - +1.1 57,459 - -0.2 57,459 - +1.0 57,461 + +1.0 57,461 + +0.2 57,461 + +0.2 57,461 + +0.1 57,461 + +0.7 57,461 + -0.9 57,461 + +0.9 57,461 + -0.8 57,461 + +0.3 57,462 - +0.5 57,462 - +0.6 57,462 - +0.8 57,462 - -0.2 57,462 - +0.1 57,462 - +0.5 57,462 - -1.1 57,462 - +0.1 57,462 - -0.4 57,462 - +0.4 57,462 - +0.4 57,462 - +0.0 57,462 - -0.1 57,462 - +0.6 57,477 + +0.3 57,477 + +0.1 57,477 + +0.7 57,477 + +0.1 57,477 + +0.3 57,477 + +0.6 57,477 + +0.4 57,477 + +0.3 57,477 + +3.0 57,478 - +0.5 57,478 - -0.1 57,478 - +0.5 57,478 - +0.1 57,478 - +0.6 57,478 - +0.1 57,478 - +0.8 57,478 - +0.9 57,478 - -0.2 57,507 - +0.4 57,507 - +1.0 57,510 + +0.2 57,511 - +0.8 57,740 - EX31_RS14825 0.43 +0.4 57,740 - EX31_RS14825 0.43 +0.7 57,751 - EX31_RS14825 0.44 +0.5 57,830 + EX31_RS14825 0.56 -0.6 57,830 + EX31_RS14825 0.56 +1.0 57,831 - EX31_RS14825 0.56 -0.0 57,831 - EX31_RS14825 0.56 +1.3 57,831 - EX31_RS14825 0.56 +0.9 57,831 - EX31_RS14825 0.56 +0.8 57,837 + EX31_RS14825 0.57 +0.1 57,837 + EX31_RS14825 0.57 +0.3 57,837 + EX31_RS14825 0.57 +0.6 57,838 - EX31_RS14825 0.57 +0.3 57,967 + EX31_RS14825 0.77 +1.3 57,967 + EX31_RS14825 0.77 -0.4 57,967 + EX31_RS14825 0.77 +0.9 57,968 - EX31_RS14825 0.77 -0.1 57,968 - EX31_RS14825 0.77 +0.2 57,968 - EX31_RS14825 0.77 +0.6 57,968 - EX31_RS14825 0.77 +0.0 58,089 - +0.5 58,089 - +0.4 58,089 - +0.4 58,095 + -0.4 58,096 - -0.5 58,123 + -0.0 58,123 + +0.3 58,124 - +0.2 58,124 - +0.5 58,124 - +0.6 58,126 + +0.8 58,126 + -0.3 58,126 + +0.1 58,127 - +0.8 58,127 - -0.1
Or see this region's nucleotide sequence