Strain Fitness in Rahnella sp. WP5 around EX31_RS13960

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS13950 and EX31_RS13955 overlap by 4 nucleotidesEX31_RS13955 and EX31_RS13960 are separated by 50 nucleotidesEX31_RS13960 and EX31_RS13965 overlap by 8 nucleotidesEX31_RS13965 and EX31_RS13970 are separated by 46 nucleotides EX31_RS13950: EX31_RS13950 - hemin-degrading factor, at 53,703 to 54,740 _RS13950 EX31_RS13955: EX31_RS13955 - ABC transporter substrate-binding protein, at 54,737 to 55,567 _RS13955 EX31_RS13960: EX31_RS13960 - iron ABC transporter permease, at 55,618 to 56,592 _RS13960 EX31_RS13965: EX31_RS13965 - heme ABC transporter ATP-binding protein, at 56,585 to 57,373 _RS13965 EX31_RS13970: EX31_RS13970 - YdiU family protein, at 57,420 to 58,874 _RS13970 Position (kb) 55 56 57Strain fitness (log2 ratio) -3 -2 -1 0 1at 54.635 kb on + strand, within EX31_RS13950at 54.717 kb on - strandat 54.889 kb on + strand, within EX31_RS13955at 54.935 kb on + strand, within EX31_RS13955at 54.935 kb on + strand, within EX31_RS13955at 54.936 kb on - strand, within EX31_RS13955at 54.938 kb on - strand, within EX31_RS13955at 55.023 kb on + strand, within EX31_RS13955at 55.023 kb on + strand, within EX31_RS13955at 55.023 kb on + strand, within EX31_RS13955at 55.160 kb on + strand, within EX31_RS13955at 55.160 kb on + strand, within EX31_RS13955at 55.160 kb on + strand, within EX31_RS13955at 55.243 kb on + strand, within EX31_RS13955at 55.243 kb on + strand, within EX31_RS13955at 55.243 kb on + strand, within EX31_RS13955at 55.243 kb on + strand, within EX31_RS13955at 55.244 kb on - strand, within EX31_RS13955at 55.244 kb on - strand, within EX31_RS13955at 55.261 kb on + strand, within EX31_RS13955at 55.378 kb on - strand, within EX31_RS13955at 55.444 kb on + strand, within EX31_RS13955at 55.444 kb on + strand, within EX31_RS13955at 55.444 kb on + strand, within EX31_RS13955at 55.445 kb on - strand, within EX31_RS13955at 55.489 kb on + strandat 55.489 kb on + strandat 55.569 kb on + strandat 55.722 kb on + strand, within EX31_RS13960at 55.722 kb on + strand, within EX31_RS13960at 55.896 kb on + strand, within EX31_RS13960at 55.899 kb on - strand, within EX31_RS13960at 55.899 kb on - strand, within EX31_RS13960at 55.937 kb on - strand, within EX31_RS13960at 55.944 kb on + strand, within EX31_RS13960at 55.944 kb on + strand, within EX31_RS13960at 55.945 kb on - strand, within EX31_RS13960at 55.993 kb on - strand, within EX31_RS13960at 56.030 kb on + strand, within EX31_RS13960at 56.089 kb on + strand, within EX31_RS13960at 56.090 kb on - strand, within EX31_RS13960at 56.090 kb on - strand, within EX31_RS13960at 56.111 kb on + strand, within EX31_RS13960at 56.235 kb on + strand, within EX31_RS13960at 56.246 kb on + strand, within EX31_RS13960at 56.247 kb on - strand, within EX31_RS13960at 56.266 kb on + strand, within EX31_RS13960at 56.267 kb on - strand, within EX31_RS13960at 56.303 kb on + strand, within EX31_RS13960at 56.423 kb on + strand, within EX31_RS13960at 56.545 kb on + strandat 56.737 kb on + strand, within EX31_RS13965at 56.737 kb on + strand, within EX31_RS13965at 56.750 kb on + strand, within EX31_RS13965at 56.840 kb on - strand, within EX31_RS13965at 56.854 kb on + strand, within EX31_RS13965at 56.854 kb on + strand, within EX31_RS13965at 56.854 kb on + strand, within EX31_RS13965at 56.854 kb on + strand, within EX31_RS13965at 56.854 kb on + strand, within EX31_RS13965at 56.855 kb on - strand, within EX31_RS13965at 56.873 kb on - strand, within EX31_RS13965at 56.886 kb on + strand, within EX31_RS13965at 56.886 kb on + strand, within EX31_RS13965at 56.886 kb on + strand, within EX31_RS13965at 57.094 kb on + strand, within EX31_RS13965at 57.111 kb on + strand, within EX31_RS13965at 57.114 kb on - strand, within EX31_RS13965at 57.151 kb on - strand, within EX31_RS13965at 57.212 kb on + strand, within EX31_RS13965at 57.212 kb on + strand, within EX31_RS13965at 57.213 kb on - strand, within EX31_RS13965at 57.213 kb on - strand, within EX31_RS13965at 57.436 kb on - strandat 57.502 kb on + strandat 57.546 kb on - strandat 57.586 kb on + strand, within EX31_RS13970

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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54,635 + EX31_RS13950 0.90 -0.1
54,717 - +0.3
54,889 + EX31_RS13955 0.18 -0.5
54,935 + EX31_RS13955 0.24 -0.2
54,935 + EX31_RS13955 0.24 -0.4
54,936 - EX31_RS13955 0.24 -0.2
54,938 - EX31_RS13955 0.24 +0.2
55,023 + EX31_RS13955 0.34 -0.6
55,023 + EX31_RS13955 0.34 +0.8
55,023 + EX31_RS13955 0.34 +0.8
55,160 + EX31_RS13955 0.51 +1.1
55,160 + EX31_RS13955 0.51 -0.7
55,160 + EX31_RS13955 0.51 -0.4
55,243 + EX31_RS13955 0.61 +0.5
55,243 + EX31_RS13955 0.61 +0.7
55,243 + EX31_RS13955 0.61 -1.1
55,243 + EX31_RS13955 0.61 -0.3
55,244 - EX31_RS13955 0.61 -1.0
55,244 - EX31_RS13955 0.61 +0.3
55,261 + EX31_RS13955 0.63 +0.1
55,378 - EX31_RS13955 0.77 -0.9
55,444 + EX31_RS13955 0.85 +0.2
55,444 + EX31_RS13955 0.85 +0.2
55,444 + EX31_RS13955 0.85 -1.8
55,445 - EX31_RS13955 0.85 -1.7
55,489 + +0.6
55,489 + -0.4
55,569 + +0.7
55,722 + EX31_RS13960 0.11 -0.3
55,722 + EX31_RS13960 0.11 -0.5
55,896 + EX31_RS13960 0.29 -0.2
55,899 - EX31_RS13960 0.29 +0.7
55,899 - EX31_RS13960 0.29 -1.7
55,937 - EX31_RS13960 0.33 +0.2
55,944 + EX31_RS13960 0.33 +0.1
55,944 + EX31_RS13960 0.33 +0.0
55,945 - EX31_RS13960 0.34 +0.1
55,993 - EX31_RS13960 0.38 +0.5
56,030 + EX31_RS13960 0.42 -0.5
56,089 + EX31_RS13960 0.48 -1.3
56,090 - EX31_RS13960 0.48 -3.2
56,090 - EX31_RS13960 0.48 -2.9
56,111 + EX31_RS13960 0.51 -0.5
56,235 + EX31_RS13960 0.63 -0.6
56,246 + EX31_RS13960 0.64 +0.0
56,247 - EX31_RS13960 0.65 -0.0
56,266 + EX31_RS13960 0.66 -0.5
56,267 - EX31_RS13960 0.67 -0.6
56,303 + EX31_RS13960 0.70 -1.5
56,423 + EX31_RS13960 0.83 +0.4
56,545 + -0.3
56,737 + EX31_RS13965 0.19 +0.4
56,737 + EX31_RS13965 0.19 +0.1
56,750 + EX31_RS13965 0.21 +0.0
56,840 - EX31_RS13965 0.32 +0.9
56,854 + EX31_RS13965 0.34 -0.2
56,854 + EX31_RS13965 0.34 +0.7
56,854 + EX31_RS13965 0.34 -1.0
56,854 + EX31_RS13965 0.34 -0.5
56,854 + EX31_RS13965 0.34 +0.5
56,855 - EX31_RS13965 0.34 -0.6
56,873 - EX31_RS13965 0.37 -0.8
56,886 + EX31_RS13965 0.38 +0.4
56,886 + EX31_RS13965 0.38 +0.1
56,886 + EX31_RS13965 0.38 +1.2
57,094 + EX31_RS13965 0.65 +0.5
57,111 + EX31_RS13965 0.67 -0.2
57,114 - EX31_RS13965 0.67 -0.4
57,151 - EX31_RS13965 0.72 +0.8
57,212 + EX31_RS13965 0.79 +0.4
57,212 + EX31_RS13965 0.79 +0.5
57,213 - EX31_RS13965 0.80 +1.0
57,213 - EX31_RS13965 0.80 +1.3
57,436 - -1.0
57,502 + +1.0
57,546 - +0.4
57,586 + EX31_RS13970 0.11 -0.3

Or see this region's nucleotide sequence