Strain Fitness in Rahnella sp. WP5 around EX31_RS12415

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12405 and EX31_RS12410 are separated by 6 nucleotidesEX31_RS12410 and EX31_RS12415 overlap by 23 nucleotidesEX31_RS12415 and EX31_RS12420 overlap by 4 nucleotidesEX31_RS12420 and EX31_RS12425 are separated by 16 nucleotides EX31_RS12405: EX31_RS12405 - LPS export ABC transporter ATP-binding protein, at 149,897 to 150,622 _RS12405 EX31_RS12410: EX31_RS12410 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 150,629 to 151,186 _RS12410 EX31_RS12415: EX31_RS12415 - LPS export ABC transporter periplasmic protein LptC, at 151,164 to 151,733 _RS12415 EX31_RS12420: EX31_RS12420 - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 151,730 to 152,296 _RS12420 EX31_RS12425: EX31_RS12425 - arabinose-5-phosphate isomerase KdsD, at 152,313 to 153,299 _RS12425 Position (kb) 151 152Strain fitness (log2 ratio) -2 -1 0 1 2at 151.257 kb on - strand, within EX31_RS12415at 151.277 kb on - strand, within EX31_RS12415at 151.277 kb on - strand, within EX31_RS12415at 151.277 kb on - strand, within EX31_RS12415at 151.277 kb on - strand, within EX31_RS12415at 151.277 kb on - strand, within EX31_RS12415at 151.277 kb on - strand, within EX31_RS12415at 151.734 kb on - strandat 151.763 kb on - strandat 151.763 kb on - strandat 151.763 kb on - strandat 151.800 kb on - strand, within EX31_RS12420at 151.800 kb on - strand, within EX31_RS12420at 151.829 kb on - strand, within EX31_RS12420at 151.834 kb on - strand, within EX31_RS12420at 151.834 kb on - strand, within EX31_RS12420at 151.834 kb on - strand, within EX31_RS12420at 151.834 kb on - strand, within EX31_RS12420at 151.834 kb on - strand, within EX31_RS12420at 151.834 kb on - strand, within EX31_RS12420at 151.834 kb on - strand, within EX31_RS12420at 151.834 kb on - strand, within EX31_RS12420at 151.834 kb on - strand, within EX31_RS12420at 151.834 kb on - strand, within EX31_RS12420at 151.834 kb on - strand, within EX31_RS12420at 151.834 kb on - strand, within EX31_RS12420at 151.890 kb on - strand, within EX31_RS12420at 151.890 kb on - strand, within EX31_RS12420at 151.890 kb on - strand, within EX31_RS12420at 151.933 kb on - strand, within EX31_RS12420at 151.933 kb on - strand, within EX31_RS12420at 151.933 kb on - strand, within EX31_RS12420at 151.933 kb on - strand, within EX31_RS12420at 151.933 kb on - strand, within EX31_RS12420at 151.933 kb on - strand, within EX31_RS12420at 151.933 kb on - strand, within EX31_RS12420at 151.964 kb on - strand, within EX31_RS12420at 151.964 kb on - strand, within EX31_RS12420at 151.964 kb on - strand, within EX31_RS12420at 151.964 kb on - strand, within EX31_RS12420at 151.964 kb on - strand, within EX31_RS12420at 151.968 kb on - strand, within EX31_RS12420at 151.968 kb on - strand, within EX31_RS12420at 151.968 kb on - strand, within EX31_RS12420at 151.968 kb on - strand, within EX31_RS12420at 151.968 kb on - strand, within EX31_RS12420at 151.968 kb on - strand, within EX31_RS12420at 151.994 kb on - strand, within EX31_RS12420at 152.011 kb on - strand, within EX31_RS12420at 152.011 kb on - strand, within EX31_RS12420at 152.011 kb on - strand, within EX31_RS12420at 152.011 kb on - strand, within EX31_RS12420at 152.011 kb on - strand, within EX31_RS12420at 152.011 kb on - strand, within EX31_RS12420at 152.011 kb on - strand, within EX31_RS12420at 152.011 kb on - strand, within EX31_RS12420at 152.011 kb on - strand, within EX31_RS12420at 152.011 kb on - strand, within EX31_RS12420at 152.022 kb on - strand, within EX31_RS12420at 152.022 kb on - strand, within EX31_RS12420at 152.036 kb on - strand, within EX31_RS12420at 152.075 kb on - strand, within EX31_RS12420at 152.170 kb on - strand, within EX31_RS12420at 152.170 kb on - strand, within EX31_RS12420at 152.170 kb on - strand, within EX31_RS12420at 152.170 kb on - strand, within EX31_RS12420at 152.170 kb on - strand, within EX31_RS12420at 152.170 kb on - strand, within EX31_RS12420at 152.170 kb on - strand, within EX31_RS12420at 152.170 kb on - strand, within EX31_RS12420at 152.170 kb on - strand, within EX31_RS12420at 152.170 kb on - strand, within EX31_RS12420at 152.189 kb on - strand, within EX31_RS12420at 152.189 kb on - strand, within EX31_RS12420at 152.291 kb on - strandat 152.315 kb on - strandat 152.315 kb on - strandat 152.315 kb on - strandat 152.315 kb on - strandat 152.315 kb on - strandat 152.315 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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151,257 - EX31_RS12415 0.16 +0.1
151,277 - EX31_RS12415 0.20 +0.8
151,277 - EX31_RS12415 0.20 +0.1
151,277 - EX31_RS12415 0.20 -0.2
151,277 - EX31_RS12415 0.20 +0.9
151,277 - EX31_RS12415 0.20 +0.3
151,277 - EX31_RS12415 0.20 +0.7
151,734 - +0.6
151,763 - -0.5
151,763 - +0.6
151,763 - -0.5
151,800 - EX31_RS12420 0.12 -0.2
151,800 - EX31_RS12420 0.12 -1.6
151,829 - EX31_RS12420 0.17 +0.4
151,834 - EX31_RS12420 0.18 +0.9
151,834 - EX31_RS12420 0.18 -0.0
151,834 - EX31_RS12420 0.18 +0.9
151,834 - EX31_RS12420 0.18 -0.3
151,834 - EX31_RS12420 0.18 +0.7
151,834 - EX31_RS12420 0.18 +0.1
151,834 - EX31_RS12420 0.18 +0.2
151,834 - EX31_RS12420 0.18 -0.7
151,834 - EX31_RS12420 0.18 -0.1
151,834 - EX31_RS12420 0.18 +0.2
151,834 - EX31_RS12420 0.18 -0.2
151,834 - EX31_RS12420 0.18 -0.2
151,890 - EX31_RS12420 0.28 +1.9
151,890 - EX31_RS12420 0.28 +0.9
151,890 - EX31_RS12420 0.28 -0.5
151,933 - EX31_RS12420 0.36 -1.4
151,933 - EX31_RS12420 0.36 +0.8
151,933 - EX31_RS12420 0.36 +0.1
151,933 - EX31_RS12420 0.36 -0.0
151,933 - EX31_RS12420 0.36 -0.6
151,933 - EX31_RS12420 0.36 +1.7
151,933 - EX31_RS12420 0.36 -0.5
151,964 - EX31_RS12420 0.41 -0.4
151,964 - EX31_RS12420 0.41 +0.7
151,964 - EX31_RS12420 0.41 +0.6
151,964 - EX31_RS12420 0.41 +0.7
151,964 - EX31_RS12420 0.41 +0.8
151,968 - EX31_RS12420 0.42 -0.0
151,968 - EX31_RS12420 0.42 -0.4
151,968 - EX31_RS12420 0.42 +0.6
151,968 - EX31_RS12420 0.42 +0.7
151,968 - EX31_RS12420 0.42 +0.2
151,968 - EX31_RS12420 0.42 +0.1
151,994 - EX31_RS12420 0.47 -0.7
152,011 - EX31_RS12420 0.50 +0.3
152,011 - EX31_RS12420 0.50 +0.6
152,011 - EX31_RS12420 0.50 -0.6
152,011 - EX31_RS12420 0.50 +0.1
152,011 - EX31_RS12420 0.50 +0.6
152,011 - EX31_RS12420 0.50 +0.3
152,011 - EX31_RS12420 0.50 +0.1
152,011 - EX31_RS12420 0.50 -0.5
152,011 - EX31_RS12420 0.50 +0.4
152,011 - EX31_RS12420 0.50 +0.2
152,022 - EX31_RS12420 0.51 +1.2
152,022 - EX31_RS12420 0.51 -0.8
152,036 - EX31_RS12420 0.54 +1.0
152,075 - EX31_RS12420 0.61 +0.4
152,170 - EX31_RS12420 0.78 +0.6
152,170 - EX31_RS12420 0.78 +0.4
152,170 - EX31_RS12420 0.78 -2.1
152,170 - EX31_RS12420 0.78 -0.3
152,170 - EX31_RS12420 0.78 +0.4
152,170 - EX31_RS12420 0.78 -0.1
152,170 - EX31_RS12420 0.78 -0.4
152,170 - EX31_RS12420 0.78 +0.2
152,170 - EX31_RS12420 0.78 -0.3
152,170 - EX31_RS12420 0.78 +0.9
152,189 - EX31_RS12420 0.81 +0.8
152,189 - EX31_RS12420 0.81 -0.1
152,291 - +0.6
152,315 - -0.3
152,315 - +0.5
152,315 - -0.1
152,315 - +0.1
152,315 - +0.3
152,315 - -0.4

Or see this region's nucleotide sequence