Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11390 and EX31_RS11395 are separated by 114 nucleotides EX31_RS11395 and EX31_RS11400 are separated by 561 nucleotides
EX31_RS11390: EX31_RS11390 - MFS transporter, at 209,566 to 211,041
_RS11390
EX31_RS11395: EX31_RS11395 - transcriptional regulator FtrA, at 211,156 to 212,169
_RS11395
EX31_RS11400: EX31_RS11400 - chemotaxis protein CheW, at 212,731 to 213,228
_RS11400
Position (kb) 211
212
213 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 210.188 kb on + strand, within EX31_RS11390 at 210.191 kb on + strand, within EX31_RS11390 at 210.191 kb on + strand, within EX31_RS11390 at 210.191 kb on + strand, within EX31_RS11390 at 210.203 kb on + strand, within EX31_RS11390 at 210.630 kb on + strand, within EX31_RS11390 at 210.630 kb on + strand, within EX31_RS11390 at 210.630 kb on + strand, within EX31_RS11390 at 210.630 kb on + strand, within EX31_RS11390 at 210.630 kb on + strand, within EX31_RS11390 at 210.630 kb on + strand, within EX31_RS11390 at 210.630 kb on + strand, within EX31_RS11390 at 210.630 kb on + strand, within EX31_RS11390 at 210.630 kb on + strand, within EX31_RS11390 at 210.631 kb on - strand, within EX31_RS11390 at 210.810 kb on + strand, within EX31_RS11390 at 210.811 kb on - strand, within EX31_RS11390 at 210.811 kb on - strand, within EX31_RS11390 at 210.858 kb on + strand, within EX31_RS11390 at 210.897 kb on - strand at 210.897 kb on - strand at 210.961 kb on + strand at 210.962 kb on - strand at 211.045 kb on + strand at 211.045 kb on + strand at 211.071 kb on + strand at 211.071 kb on + strand at 211.071 kb on + strand at 211.118 kb on + strand at 211.118 kb on + strand at 211.234 kb on + strand at 211.235 kb on - strand at 211.235 kb on - strand at 211.235 kb on - strand at 211.248 kb on + strand at 211.315 kb on + strand, within EX31_RS11395 at 211.315 kb on + strand, within EX31_RS11395 at 211.315 kb on + strand, within EX31_RS11395 at 211.648 kb on + strand, within EX31_RS11395 at 211.648 kb on + strand, within EX31_RS11395 at 211.648 kb on + strand, within EX31_RS11395 at 211.649 kb on - strand, within EX31_RS11395 at 211.649 kb on - strand, within EX31_RS11395 at 211.649 kb on - strand, within EX31_RS11395 at 211.729 kb on + strand, within EX31_RS11395 at 211.865 kb on + strand, within EX31_RS11395 at 211.865 kb on + strand, within EX31_RS11395 at 211.865 kb on + strand, within EX31_RS11395 at 211.882 kb on - strand, within EX31_RS11395 at 211.882 kb on - strand, within EX31_RS11395 at 211.968 kb on + strand, within EX31_RS11395 at 211.968 kb on + strand, within EX31_RS11395 at 212.295 kb on + strand at 212.392 kb on + strand at 212.392 kb on + strand at 212.392 kb on + strand at 212.453 kb on + strand at 212.487 kb on - strand at 212.733 kb on - strand at 212.733 kb on - strand at 212.791 kb on - strand, within EX31_RS11400 at 212.808 kb on + strand, within EX31_RS11400 at 212.808 kb on + strand, within EX31_RS11400 at 212.808 kb on + strand, within EX31_RS11400 at 212.808 kb on + strand, within EX31_RS11400 at 212.808 kb on + strand, within EX31_RS11400 at 212.808 kb on + strand, within EX31_RS11400 at 212.809 kb on - strand, within EX31_RS11400 at 212.809 kb on - strand, within EX31_RS11400 at 212.809 kb on - strand, within EX31_RS11400 at 212.809 kb on - strand, within EX31_RS11400 at 212.955 kb on + strand, within EX31_RS11400 at 212.956 kb on - strand, within EX31_RS11400 at 212.956 kb on - strand, within EX31_RS11400 at 212.956 kb on - strand, within EX31_RS11400 at 212.956 kb on - strand, within EX31_RS11400 at 212.960 kb on - strand, within EX31_RS11400 at 212.960 kb on - strand, within EX31_RS11400 at 212.960 kb on - strand, within EX31_RS11400 at 212.984 kb on + strand, within EX31_RS11400 at 212.984 kb on + strand, within EX31_RS11400 at 212.985 kb on - strand, within EX31_RS11400 at 212.985 kb on - strand, within EX31_RS11400 at 213.063 kb on + strand, within EX31_RS11400 at 213.064 kb on - strand, within EX31_RS11400 at 213.081 kb on + strand, within EX31_RS11400 at 213.144 kb on - strand, within EX31_RS11400 at 213.162 kb on + strand, within EX31_RS11400
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 210,188 + EX31_RS11390 0.42 -0.8 210,191 + EX31_RS11390 0.42 -0.9 210,191 + EX31_RS11390 0.42 -0.9 210,191 + EX31_RS11390 0.42 -0.1 210,203 + EX31_RS11390 0.43 -0.0 210,630 + EX31_RS11390 0.72 -0.1 210,630 + EX31_RS11390 0.72 +0.3 210,630 + EX31_RS11390 0.72 -0.5 210,630 + EX31_RS11390 0.72 -0.2 210,630 + EX31_RS11390 0.72 +0.9 210,630 + EX31_RS11390 0.72 -1.8 210,630 + EX31_RS11390 0.72 -0.6 210,630 + EX31_RS11390 0.72 +0.4 210,630 + EX31_RS11390 0.72 +0.5 210,631 - EX31_RS11390 0.72 +0.1 210,810 + EX31_RS11390 0.84 +0.2 210,811 - EX31_RS11390 0.84 -0.2 210,811 - EX31_RS11390 0.84 +0.8 210,858 + EX31_RS11390 0.88 +1.5 210,897 - +0.6 210,897 - +0.4 210,961 + +0.4 210,962 - +0.7 211,045 + +1.0 211,045 + +0.9 211,071 + -0.1 211,071 + -0.0 211,071 + +0.2 211,118 + +0.3 211,118 + -0.3 211,234 + +0.5 211,235 - +0.3 211,235 - -0.6 211,235 - +0.6 211,248 + +0.4 211,315 + EX31_RS11395 0.16 +0.2 211,315 + EX31_RS11395 0.16 +1.3 211,315 + EX31_RS11395 0.16 +1.2 211,648 + EX31_RS11395 0.49 +0.8 211,648 + EX31_RS11395 0.49 +0.7 211,648 + EX31_RS11395 0.49 +0.1 211,649 - EX31_RS11395 0.49 +1.3 211,649 - EX31_RS11395 0.49 +0.0 211,649 - EX31_RS11395 0.49 +0.6 211,729 + EX31_RS11395 0.57 +0.8 211,865 + EX31_RS11395 0.70 -0.5 211,865 + EX31_RS11395 0.70 -0.5 211,865 + EX31_RS11395 0.70 -0.2 211,882 - EX31_RS11395 0.72 +0.5 211,882 - EX31_RS11395 0.72 -2.7 211,968 + EX31_RS11395 0.80 -1.0 211,968 + EX31_RS11395 0.80 +0.7 212,295 + -1.7 212,392 + -0.7 212,392 + -1.2 212,392 + +0.8 212,453 + -1.5 212,487 - -1.3 212,733 - +0.4 212,733 - +0.6 212,791 - EX31_RS11400 0.12 +1.5 212,808 + EX31_RS11400 0.15 -0.5 212,808 + EX31_RS11400 0.15 +2.1 212,808 + EX31_RS11400 0.15 -0.1 212,808 + EX31_RS11400 0.15 -0.8 212,808 + EX31_RS11400 0.15 -0.1 212,808 + EX31_RS11400 0.15 +0.9 212,809 - EX31_RS11400 0.16 -2.4 212,809 - EX31_RS11400 0.16 +0.4 212,809 - EX31_RS11400 0.16 -0.9 212,809 - EX31_RS11400 0.16 -0.3 212,955 + EX31_RS11400 0.45 -0.2 212,956 - EX31_RS11400 0.45 -0.8 212,956 - EX31_RS11400 0.45 +3.5 212,956 - EX31_RS11400 0.45 +1.1 212,956 - EX31_RS11400 0.45 -2.9 212,960 - EX31_RS11400 0.46 -0.3 212,960 - EX31_RS11400 0.46 +0.4 212,960 - EX31_RS11400 0.46 +0.8 212,984 + EX31_RS11400 0.51 -0.8 212,984 + EX31_RS11400 0.51 +0.4 212,985 - EX31_RS11400 0.51 +0.6 212,985 - EX31_RS11400 0.51 -0.0 213,063 + EX31_RS11400 0.67 -1.1 213,064 - EX31_RS11400 0.67 -1.0 213,081 + EX31_RS11400 0.70 +1.6 213,144 - EX31_RS11400 0.83 -0.6 213,162 + EX31_RS11400 0.87 +0.4
Or see this region's nucleotide sequence