Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11160 and EX31_RS11165 overlap by 4 nucleotides EX31_RS11165 and EX31_RS11170 are separated by 48 nucleotides
EX31_RS11160: EX31_RS11160 - hypothetical protein, at 163,697 to 164,677
_RS11160
EX31_RS11165: EX31_RS11165 - hypothetical protein, at 164,674 to 165,816
_RS11165
EX31_RS11170: EX31_RS11170 - bifunctional 2-methylcitrate dehydratase/aconitate hydratase, at 165,865 to 167,292
_RS11170
Position (kb) 164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 163.682 kb on + strand at 163.682 kb on + strand at 163.682 kb on + strand at 163.682 kb on + strand at 163.682 kb on + strand at 163.683 kb on - strand at 163.683 kb on - strand at 163.683 kb on - strand at 163.683 kb on - strand at 163.683 kb on - strand at 163.683 kb on - strand at 163.683 kb on - strand at 163.699 kb on - strand at 163.699 kb on - strand at 163.816 kb on + strand, within EX31_RS11160 at 163.835 kb on - strand, within EX31_RS11160 at 163.852 kb on - strand, within EX31_RS11160 at 163.866 kb on + strand, within EX31_RS11160 at 163.867 kb on - strand, within EX31_RS11160 at 163.867 kb on - strand, within EX31_RS11160 at 163.867 kb on - strand, within EX31_RS11160 at 163.882 kb on + strand, within EX31_RS11160 at 163.883 kb on - strand, within EX31_RS11160 at 164.019 kb on - strand, within EX31_RS11160 at 164.138 kb on - strand, within EX31_RS11160 at 164.139 kb on + strand, within EX31_RS11160 at 164.139 kb on + strand, within EX31_RS11160 at 164.139 kb on + strand, within EX31_RS11160 at 164.139 kb on + strand, within EX31_RS11160 at 164.140 kb on - strand, within EX31_RS11160 at 164.272 kb on + strand, within EX31_RS11160 at 164.273 kb on - strand, within EX31_RS11160 at 164.496 kb on + strand, within EX31_RS11160 at 164.496 kb on + strand, within EX31_RS11160 at 164.557 kb on + strand, within EX31_RS11160 at 164.658 kb on - strand at 164.662 kb on + strand at 164.662 kb on + strand at 164.662 kb on + strand at 164.663 kb on - strand at 164.663 kb on - strand at 164.663 kb on - strand at 164.663 kb on - strand at 164.663 kb on - strand at 164.732 kb on - strand at 164.741 kb on - strand at 164.741 kb on - strand at 164.754 kb on - strand at 164.769 kb on + strand at 164.816 kb on + strand, within EX31_RS11165 at 164.885 kb on + strand, within EX31_RS11165 at 164.885 kb on + strand, within EX31_RS11165 at 164.885 kb on + strand, within EX31_RS11165 at 164.886 kb on - strand, within EX31_RS11165 at 164.886 kb on - strand, within EX31_RS11165 at 165.246 kb on + strand, within EX31_RS11165 at 165.246 kb on + strand, within EX31_RS11165 at 165.269 kb on - strand, within EX31_RS11165 at 165.288 kb on + strand, within EX31_RS11165 at 165.288 kb on + strand, within EX31_RS11165 at 165.288 kb on + strand, within EX31_RS11165 at 165.317 kb on + strand, within EX31_RS11165 at 165.317 kb on + strand, within EX31_RS11165 at 165.317 kb on + strand, within EX31_RS11165 at 165.318 kb on - strand, within EX31_RS11165 at 165.390 kb on - strand, within EX31_RS11165 at 165.390 kb on - strand, within EX31_RS11165 at 165.390 kb on - strand, within EX31_RS11165 at 165.393 kb on + strand, within EX31_RS11165 at 165.481 kb on - strand, within EX31_RS11165 at 165.667 kb on + strand, within EX31_RS11165 at 165.698 kb on - strand, within EX31_RS11165 at 165.799 kb on + strand at 165.799 kb on + strand at 165.799 kb on + strand at 165.802 kb on + strand at 165.842 kb on + strand at 165.842 kb on + strand at 165.843 kb on - strand at 165.843 kb on - strand at 165.843 kb on - strand at 165.843 kb on - strand at 165.843 kb on - strand at 165.843 kb on - strand at 165.843 kb on - strand at 165.843 kb on - strand at 165.843 kb on - strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.855 kb on + strand at 165.949 kb on - strand at 165.949 kb on - strand at 166.122 kb on + strand, within EX31_RS11170 at 166.136 kb on + strand, within EX31_RS11170 at 166.136 kb on + strand, within EX31_RS11170 at 166.136 kb on + strand, within EX31_RS11170 at 166.136 kb on + strand, within EX31_RS11170 at 166.271 kb on + strand, within EX31_RS11170 at 166.272 kb on - strand, within EX31_RS11170 at 166.320 kb on + strand, within EX31_RS11170 at 166.321 kb on - strand, within EX31_RS11170 at 166.417 kb on - strand, within EX31_RS11170 at 166.429 kb on + strand, within EX31_RS11170 at 166.430 kb on - strand, within EX31_RS11170 at 166.449 kb on - strand, within EX31_RS11170 at 166.485 kb on + strand, within EX31_RS11170 at 166.659 kb on + strand, within EX31_RS11170 at 166.659 kb on + strand, within EX31_RS11170 at 166.716 kb on + strand, within EX31_RS11170 at 166.716 kb on + strand, within EX31_RS11170
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 163,682 + +0.1 163,682 + -0.1 163,682 + +1.1 163,682 + -0.3 163,682 + -1.0 163,683 - -0.0 163,683 - +0.2 163,683 - +0.3 163,683 - +0.1 163,683 - +0.7 163,683 - -0.2 163,683 - -0.3 163,699 - -0.6 163,699 - -1.6 163,816 + EX31_RS11160 0.12 +0.1 163,835 - EX31_RS11160 0.14 +0.2 163,852 - EX31_RS11160 0.16 +0.6 163,866 + EX31_RS11160 0.17 +0.1 163,867 - EX31_RS11160 0.17 +0.7 163,867 - EX31_RS11160 0.17 -0.5 163,867 - EX31_RS11160 0.17 -0.7 163,882 + EX31_RS11160 0.19 +1.6 163,883 - EX31_RS11160 0.19 -0.4 164,019 - EX31_RS11160 0.33 -1.3 164,138 - EX31_RS11160 0.45 +0.8 164,139 + EX31_RS11160 0.45 +0.9 164,139 + EX31_RS11160 0.45 +1.2 164,139 + EX31_RS11160 0.45 +1.0 164,139 + EX31_RS11160 0.45 -1.4 164,140 - EX31_RS11160 0.45 +0.3 164,272 + EX31_RS11160 0.59 -1.1 164,273 - EX31_RS11160 0.59 +0.7 164,496 + EX31_RS11160 0.81 +0.3 164,496 + EX31_RS11160 0.81 +0.5 164,557 + EX31_RS11160 0.88 -0.9 164,658 - -0.4 164,662 + -0.5 164,662 + +1.8 164,662 + -0.4 164,663 - +0.3 164,663 - +1.1 164,663 - +0.7 164,663 - -0.1 164,663 - -1.2 164,732 - -2.7 164,741 - +0.8 164,741 - -1.3 164,754 - -0.0 164,769 + +0.4 164,816 + EX31_RS11165 0.12 -1.5 164,885 + EX31_RS11165 0.18 +2.1 164,885 + EX31_RS11165 0.18 +0.9 164,885 + EX31_RS11165 0.18 +0.6 164,886 - EX31_RS11165 0.19 -0.6 164,886 - EX31_RS11165 0.19 +2.8 165,246 + EX31_RS11165 0.50 +0.4 165,246 + EX31_RS11165 0.50 +0.6 165,269 - EX31_RS11165 0.52 +0.7 165,288 + EX31_RS11165 0.54 -2.8 165,288 + EX31_RS11165 0.54 +0.0 165,288 + EX31_RS11165 0.54 +0.0 165,317 + EX31_RS11165 0.56 +0.2 165,317 + EX31_RS11165 0.56 +1.1 165,317 + EX31_RS11165 0.56 +2.3 165,318 - EX31_RS11165 0.56 +0.8 165,390 - EX31_RS11165 0.63 -0.5 165,390 - EX31_RS11165 0.63 -0.2 165,390 - EX31_RS11165 0.63 -0.1 165,393 + EX31_RS11165 0.63 -1.6 165,481 - EX31_RS11165 0.71 +0.4 165,667 + EX31_RS11165 0.87 +1.3 165,698 - EX31_RS11165 0.90 +0.5 165,799 + -0.3 165,799 + +0.9 165,799 + -1.8 165,802 + +0.3 165,842 + -0.8 165,842 + +0.5 165,843 - +0.4 165,843 - +0.5 165,843 - -0.0 165,843 - +0.8 165,843 - -1.0 165,843 - -0.6 165,843 - -0.1 165,843 - -1.5 165,843 - -0.1 165,846 + -0.1 165,846 + -0.6 165,846 + +0.9 165,846 + +0.8 165,846 + +0.8 165,846 + +0.5 165,846 + -0.5 165,846 + -1.1 165,846 + -0.1 165,846 + +1.4 165,846 + +0.7 165,846 + +0.3 165,846 + +0.4 165,846 + -0.9 165,846 + +0.1 165,846 + +0.4 165,847 - +2.5 165,847 - +0.1 165,847 - +0.2 165,847 - +2.8 165,847 - +0.0 165,847 - -1.3 165,847 - +0.8 165,847 - -0.2 165,847 - +0.6 165,847 - -0.4 165,847 - +0.4 165,847 - -0.4 165,847 - +1.2 165,847 - -2.0 165,847 - +0.7 165,847 - +0.0 165,855 + -0.5 165,949 - +0.3 165,949 - -1.6 166,122 + EX31_RS11170 0.18 +0.2 166,136 + EX31_RS11170 0.19 +0.7 166,136 + EX31_RS11170 0.19 +0.7 166,136 + EX31_RS11170 0.19 -2.0 166,136 + EX31_RS11170 0.19 -0.9 166,271 + EX31_RS11170 0.28 +0.2 166,272 - EX31_RS11170 0.29 +0.1 166,320 + EX31_RS11170 0.32 -0.0 166,321 - EX31_RS11170 0.32 +0.4 166,417 - EX31_RS11170 0.39 +0.6 166,429 + EX31_RS11170 0.39 -1.1 166,430 - EX31_RS11170 0.40 +0.2 166,449 - EX31_RS11170 0.41 +0.7 166,485 + EX31_RS11170 0.43 -0.7 166,659 + EX31_RS11170 0.56 -0.4 166,659 + EX31_RS11170 0.56 +2.6 166,716 + EX31_RS11170 0.60 +0.1 166,716 + EX31_RS11170 0.60 +1.6
Or see this region's nucleotide sequence