Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10740 and EX31_RS10745 are separated by 127 nucleotides EX31_RS10745 and EX31_RS10750 overlap by 1 nucleotides EX31_RS10750 and EX31_RS10755 are separated by 94 nucleotides
EX31_RS10740: EX31_RS10740 - LysR family transcriptional regulator, at 63,845 to 64,764
_RS10740
EX31_RS10745: EX31_RS10745 - chromate transporter, at 64,892 to 65,476
_RS10745
EX31_RS10750: EX31_RS10750 - chromate transporter, at 65,476 to 65,994
_RS10750
EX31_RS10755: EX31_RS10755 - glycoside hydrolase family 3 protein, at 66,089 to 68,050
_RS10755
Position (kb) 64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 63.893 kb on + strand at 63.894 kb on - strand at 63.931 kb on - strand at 63.931 kb on - strand at 63.933 kb on - strand at 63.933 kb on - strand at 63.974 kb on + strand, within EX31_RS10740 at 64.019 kb on - strand, within EX31_RS10740 at 64.019 kb on - strand, within EX31_RS10740 at 64.062 kb on - strand, within EX31_RS10740 at 64.085 kb on - strand, within EX31_RS10740 at 64.110 kb on + strand, within EX31_RS10740 at 64.110 kb on + strand, within EX31_RS10740 at 64.110 kb on + strand, within EX31_RS10740 at 64.111 kb on - strand, within EX31_RS10740 at 64.111 kb on - strand, within EX31_RS10740 at 64.111 kb on - strand, within EX31_RS10740 at 64.131 kb on + strand, within EX31_RS10740 at 64.132 kb on - strand, within EX31_RS10740 at 64.132 kb on - strand, within EX31_RS10740 at 64.158 kb on + strand, within EX31_RS10740 at 64.158 kb on + strand, within EX31_RS10740 at 64.158 kb on + strand, within EX31_RS10740 at 64.159 kb on - strand, within EX31_RS10740 at 64.160 kb on + strand, within EX31_RS10740 at 64.160 kb on + strand, within EX31_RS10740 at 64.161 kb on - strand, within EX31_RS10740 at 64.163 kb on + strand, within EX31_RS10740 at 64.164 kb on - strand, within EX31_RS10740 at 64.164 kb on - strand, within EX31_RS10740 at 64.164 kb on - strand, within EX31_RS10740 at 64.164 kb on - strand, within EX31_RS10740 at 64.292 kb on - strand, within EX31_RS10740 at 64.302 kb on + strand, within EX31_RS10740 at 64.303 kb on - strand, within EX31_RS10740 at 64.303 kb on - strand, within EX31_RS10740 at 64.449 kb on + strand, within EX31_RS10740 at 64.450 kb on - strand, within EX31_RS10740 at 64.450 kb on - strand, within EX31_RS10740 at 64.618 kb on + strand, within EX31_RS10740 at 64.619 kb on - strand, within EX31_RS10740 at 64.655 kb on - strand, within EX31_RS10740 at 64.655 kb on - strand, within EX31_RS10740 at 64.655 kb on - strand, within EX31_RS10740 at 64.708 kb on - strand at 64.732 kb on - strand at 64.764 kb on + strand at 64.764 kb on + strand at 64.765 kb on - strand at 64.765 kb on - strand at 64.770 kb on + strand at 64.771 kb on - strand at 64.771 kb on - strand at 64.771 kb on - strand at 64.771 kb on - strand at 64.797 kb on + strand at 64.806 kb on + strand at 64.806 kb on + strand at 64.849 kb on + strand at 64.849 kb on + strand at 65.234 kb on + strand, within EX31_RS10745 at 65.234 kb on + strand, within EX31_RS10745 at 65.234 kb on + strand, within EX31_RS10745 at 65.234 kb on + strand, within EX31_RS10745 at 65.234 kb on + strand, within EX31_RS10745 at 65.234 kb on + strand, within EX31_RS10745 at 65.234 kb on + strand, within EX31_RS10745 at 65.234 kb on + strand, within EX31_RS10745 at 65.234 kb on + strand, within EX31_RS10745 at 65.235 kb on - strand, within EX31_RS10745 at 65.304 kb on + strand, within EX31_RS10745 at 65.304 kb on + strand, within EX31_RS10745 at 65.382 kb on + strand, within EX31_RS10745 at 65.468 kb on - strand at 65.486 kb on + strand at 65.509 kb on - strand at 65.545 kb on - strand, within EX31_RS10750 at 65.652 kb on + strand, within EX31_RS10750 at 65.746 kb on - strand, within EX31_RS10750 at 65.746 kb on - strand, within EX31_RS10750 at 65.801 kb on + strand, within EX31_RS10750 at 65.855 kb on + strand, within EX31_RS10750 at 65.914 kb on - strand, within EX31_RS10750 at 66.033 kb on + strand at 66.033 kb on + strand at 66.033 kb on + strand at 66.034 kb on - strand at 66.034 kb on - strand at 66.063 kb on - strand at 66.063 kb on - strand at 66.064 kb on + strand at 66.064 kb on + strand at 66.213 kb on + strand at 66.213 kb on + strand at 66.214 kb on - strand at 66.254 kb on + strand at 66.254 kb on + strand at 66.418 kb on + strand, within EX31_RS10755
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 63,893 + +0.0 63,894 - -0.4 63,931 - +0.2 63,931 - -1.2 63,933 - -0.5 63,933 - +0.1 63,974 + EX31_RS10740 0.14 +1.5 64,019 - EX31_RS10740 0.19 -0.3 64,019 - EX31_RS10740 0.19 -0.5 64,062 - EX31_RS10740 0.24 -1.8 64,085 - EX31_RS10740 0.26 -0.1 64,110 + EX31_RS10740 0.29 -0.8 64,110 + EX31_RS10740 0.29 -1.0 64,110 + EX31_RS10740 0.29 -0.4 64,111 - EX31_RS10740 0.29 -0.5 64,111 - EX31_RS10740 0.29 +1.7 64,111 - EX31_RS10740 0.29 +1.1 64,131 + EX31_RS10740 0.31 -0.4 64,132 - EX31_RS10740 0.31 -0.4 64,132 - EX31_RS10740 0.31 +1.5 64,158 + EX31_RS10740 0.34 -1.3 64,158 + EX31_RS10740 0.34 -1.1 64,158 + EX31_RS10740 0.34 +1.2 64,159 - EX31_RS10740 0.34 -0.6 64,160 + EX31_RS10740 0.34 -2.1 64,160 + EX31_RS10740 0.34 -2.8 64,161 - EX31_RS10740 0.34 +0.8 64,163 + EX31_RS10740 0.35 -0.8 64,164 - EX31_RS10740 0.35 -0.9 64,164 - EX31_RS10740 0.35 +1.1 64,164 - EX31_RS10740 0.35 +0.1 64,164 - EX31_RS10740 0.35 -0.6 64,292 - EX31_RS10740 0.49 +0.4 64,302 + EX31_RS10740 0.50 +0.1 64,303 - EX31_RS10740 0.50 +1.5 64,303 - EX31_RS10740 0.50 +0.2 64,449 + EX31_RS10740 0.66 -0.9 64,450 - EX31_RS10740 0.66 -0.1 64,450 - EX31_RS10740 0.66 -1.2 64,618 + EX31_RS10740 0.84 -0.9 64,619 - EX31_RS10740 0.84 +0.0 64,655 - EX31_RS10740 0.88 -1.8 64,655 - EX31_RS10740 0.88 -0.4 64,655 - EX31_RS10740 0.88 +0.6 64,708 - +0.2 64,732 - -1.3 64,764 + +0.3 64,764 + +0.2 64,765 - -1.3 64,765 - +0.2 64,770 + +1.9 64,771 - -0.6 64,771 - +0.4 64,771 - -0.1 64,771 - +0.1 64,797 + +0.8 64,806 + +1.6 64,806 + +1.2 64,849 + +0.1 64,849 + +0.3 65,234 + EX31_RS10745 0.58 +0.1 65,234 + EX31_RS10745 0.58 +0.7 65,234 + EX31_RS10745 0.58 -0.1 65,234 + EX31_RS10745 0.58 +1.1 65,234 + EX31_RS10745 0.58 -0.1 65,234 + EX31_RS10745 0.58 +0.9 65,234 + EX31_RS10745 0.58 -0.4 65,234 + EX31_RS10745 0.58 -2.0 65,234 + EX31_RS10745 0.58 +0.4 65,235 - EX31_RS10745 0.59 +0.2 65,304 + EX31_RS10745 0.70 +1.9 65,304 + EX31_RS10745 0.70 -0.1 65,382 + EX31_RS10745 0.84 +0.4 65,468 - -0.3 65,486 + -0.1 65,509 - -0.2 65,545 - EX31_RS10750 0.13 +0.7 65,652 + EX31_RS10750 0.34 -1.6 65,746 - EX31_RS10750 0.52 -0.1 65,746 - EX31_RS10750 0.52 -0.6 65,801 + EX31_RS10750 0.63 -0.7 65,855 + EX31_RS10750 0.73 +0.9 65,914 - EX31_RS10750 0.84 +0.1 66,033 + -0.2 66,033 + -0.6 66,033 + -0.1 66,034 - +0.1 66,034 - -1.5 66,063 - +0.4 66,063 - +1.3 66,064 + -0.1 66,064 + +1.2 66,213 + -0.4 66,213 + -1.3 66,214 - -0.0 66,254 + +1.7 66,254 + +0.4 66,418 + EX31_RS10755 0.17 -0.0
Or see this region's nucleotide sequence