Strain Fitness in Rahnella sp. WP5 around EX31_RS10055

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10050 and EX31_RS10055 are separated by 20 nucleotidesEX31_RS10055 and EX31_RS10060 are separated by 15 nucleotides EX31_RS10050: EX31_RS10050 - ABC transporter ATP-binding protein, at 216,121 to 217,137 _RS10050 EX31_RS10055: EX31_RS10055 - oligopeptide ABC transporter permease OppC, at 217,158 to 218,066 _RS10055 EX31_RS10060: EX31_RS10060 - oligopeptide ABC transporter permease OppB, at 218,082 to 219,002 _RS10060 Position (kb) 217 218 219Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 216.363 kb on - strand, within EX31_RS10050at 216.387 kb on - strand, within EX31_RS10050at 216.407 kb on + strand, within EX31_RS10050at 216.407 kb on + strand, within EX31_RS10050at 216.408 kb on - strand, within EX31_RS10050at 216.432 kb on + strand, within EX31_RS10050at 216.459 kb on + strand, within EX31_RS10050at 216.460 kb on - strand, within EX31_RS10050at 216.460 kb on - strand, within EX31_RS10050at 216.466 kb on - strand, within EX31_RS10050at 216.466 kb on - strand, within EX31_RS10050at 216.573 kb on + strand, within EX31_RS10050at 216.694 kb on + strand, within EX31_RS10050at 216.695 kb on - strand, within EX31_RS10050at 216.721 kb on - strand, within EX31_RS10050at 216.838 kb on - strand, within EX31_RS10050at 216.910 kb on - strand, within EX31_RS10050at 216.952 kb on - strand, within EX31_RS10050at 216.952 kb on - strand, within EX31_RS10050at 217.078 kb on + strandat 217.079 kb on - strandat 217.079 kb on - strandat 217.225 kb on - strandat 217.225 kb on - strandat 217.443 kb on - strand, within EX31_RS10055at 217.443 kb on - strand, within EX31_RS10055at 217.607 kb on + strand, within EX31_RS10055at 217.719 kb on - strand, within EX31_RS10055at 217.761 kb on - strand, within EX31_RS10055at 217.761 kb on - strand, within EX31_RS10055at 217.761 kb on - strand, within EX31_RS10055at 217.761 kb on - strand, within EX31_RS10055at 217.783 kb on - strand, within EX31_RS10055at 217.783 kb on - strand, within EX31_RS10055at 217.856 kb on + strand, within EX31_RS10055at 217.856 kb on + strand, within EX31_RS10055at 217.857 kb on - strand, within EX31_RS10055at 217.914 kb on + strand, within EX31_RS10055at 218.055 kb on - strandat 218.058 kb on + strandat 218.059 kb on - strandat 218.059 kb on - strandat 218.059 kb on - strandat 218.059 kb on - strandat 218.059 kb on - strandat 218.073 kb on - strandat 218.073 kb on - strandat 218.083 kb on + strandat 218.143 kb on - strandat 218.188 kb on + strand, within EX31_RS10060at 218.299 kb on + strand, within EX31_RS10060at 218.299 kb on + strand, within EX31_RS10060at 218.299 kb on + strand, within EX31_RS10060at 218.300 kb on - strand, within EX31_RS10060at 218.300 kb on - strand, within EX31_RS10060at 218.300 kb on - strand, within EX31_RS10060at 218.300 kb on - strand, within EX31_RS10060at 218.300 kb on - strand, within EX31_RS10060at 218.300 kb on - strand, within EX31_RS10060at 218.300 kb on - strand, within EX31_RS10060at 218.300 kb on - strand, within EX31_RS10060at 218.300 kb on - strand, within EX31_RS10060at 218.327 kb on + strand, within EX31_RS10060at 218.430 kb on - strand, within EX31_RS10060at 218.438 kb on + strand, within EX31_RS10060at 218.448 kb on - strand, within EX31_RS10060at 218.450 kb on - strand, within EX31_RS10060at 218.450 kb on - strand, within EX31_RS10060at 218.450 kb on - strand, within EX31_RS10060at 218.483 kb on + strand, within EX31_RS10060at 218.484 kb on - strand, within EX31_RS10060at 218.484 kb on - strand, within EX31_RS10060at 218.529 kb on - strand, within EX31_RS10060at 218.529 kb on - strand, within EX31_RS10060at 218.545 kb on - strand, within EX31_RS10060at 218.618 kb on - strand, within EX31_RS10060at 218.687 kb on + strand, within EX31_RS10060at 218.687 kb on + strand, within EX31_RS10060at 218.688 kb on - strand, within EX31_RS10060at 218.688 kb on - strand, within EX31_RS10060at 218.752 kb on + strand, within EX31_RS10060at 218.752 kb on + strand, within EX31_RS10060at 218.753 kb on - strand, within EX31_RS10060at 218.753 kb on - strand, within EX31_RS10060at 218.759 kb on + strand, within EX31_RS10060at 218.759 kb on + strand, within EX31_RS10060at 218.760 kb on - strand, within EX31_RS10060at 218.760 kb on - strand, within EX31_RS10060at 218.760 kb on - strand, within EX31_RS10060at 218.760 kb on - strand, within EX31_RS10060at 218.761 kb on + strand, within EX31_RS10060at 218.761 kb on + strand, within EX31_RS10060at 218.762 kb on - strand, within EX31_RS10060at 218.762 kb on - strand, within EX31_RS10060at 218.762 kb on - strand, within EX31_RS10060at 218.762 kb on - strand, within EX31_RS10060at 218.762 kb on - strand, within EX31_RS10060at 218.762 kb on - strand, within EX31_RS10060at 218.803 kb on - strand, within EX31_RS10060at 218.824 kb on + strand, within EX31_RS10060at 218.824 kb on + strand, within EX31_RS10060at 218.825 kb on - strand, within EX31_RS10060at 218.825 kb on - strand, within EX31_RS10060at 218.825 kb on - strand, within EX31_RS10060at 218.825 kb on - strand, within EX31_RS10060at 218.825 kb on - strand, within EX31_RS10060at 218.825 kb on - strand, within EX31_RS10060at 218.825 kb on - strand, within EX31_RS10060at 218.846 kb on - strand, within EX31_RS10060at 218.986 kb on - strandat 218.997 kb on + strandat 219.020 kb on - strandat 219.031 kb on + strandat 219.032 kb on - strandat 219.042 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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216,363 - EX31_RS10050 0.24 +0.5
216,387 - EX31_RS10050 0.26 -2.1
216,407 + EX31_RS10050 0.28 -0.7
216,407 + EX31_RS10050 0.28 +0.9
216,408 - EX31_RS10050 0.28 +0.5
216,432 + EX31_RS10050 0.31 +0.1
216,459 + EX31_RS10050 0.33 -0.5
216,460 - EX31_RS10050 0.33 +0.9
216,460 - EX31_RS10050 0.33 -0.7
216,466 - EX31_RS10050 0.34 +0.3
216,466 - EX31_RS10050 0.34 -0.2
216,573 + EX31_RS10050 0.44 +0.8
216,694 + EX31_RS10050 0.56 +0.6
216,695 - EX31_RS10050 0.56 -1.6
216,721 - EX31_RS10050 0.59 +0.5
216,838 - EX31_RS10050 0.71 +0.7
216,910 - EX31_RS10050 0.78 -0.1
216,952 - EX31_RS10050 0.82 -0.6
216,952 - EX31_RS10050 0.82 +0.7
217,078 + +1.0
217,079 - +0.1
217,079 - +0.9
217,225 - -0.9
217,225 - +0.0
217,443 - EX31_RS10055 0.31 -0.4
217,443 - EX31_RS10055 0.31 +0.1
217,607 + EX31_RS10055 0.49 +0.9
217,719 - EX31_RS10055 0.62 +1.8
217,761 - EX31_RS10055 0.66 +0.8
217,761 - EX31_RS10055 0.66 -0.9
217,761 - EX31_RS10055 0.66 +1.8
217,761 - EX31_RS10055 0.66 -0.3
217,783 - EX31_RS10055 0.69 -0.6
217,783 - EX31_RS10055 0.69 +0.6
217,856 + EX31_RS10055 0.77 +0.3
217,856 + EX31_RS10055 0.77 +1.3
217,857 - EX31_RS10055 0.77 +0.5
217,914 + EX31_RS10055 0.83 +1.9
218,055 - -3.1
218,058 + -0.7
218,059 - -0.5
218,059 - +0.5
218,059 - -0.5
218,059 - +0.1
218,059 - +0.1
218,073 - -0.4
218,073 - -0.9
218,083 + -0.7
218,143 - -1.0
218,188 + EX31_RS10060 0.12 +1.2
218,299 + EX31_RS10060 0.24 +0.0
218,299 + EX31_RS10060 0.24 -0.2
218,299 + EX31_RS10060 0.24 -1.0
218,300 - EX31_RS10060 0.24 +0.5
218,300 - EX31_RS10060 0.24 +0.7
218,300 - EX31_RS10060 0.24 -0.6
218,300 - EX31_RS10060 0.24 +1.2
218,300 - EX31_RS10060 0.24 -0.4
218,300 - EX31_RS10060 0.24 +0.1
218,300 - EX31_RS10060 0.24 -1.5
218,300 - EX31_RS10060 0.24 +1.1
218,300 - EX31_RS10060 0.24 +1.1
218,327 + EX31_RS10060 0.27 -1.0
218,430 - EX31_RS10060 0.38 +0.1
218,438 + EX31_RS10060 0.39 -0.7
218,448 - EX31_RS10060 0.40 -0.3
218,450 - EX31_RS10060 0.40 -0.3
218,450 - EX31_RS10060 0.40 +0.6
218,450 - EX31_RS10060 0.40 +0.3
218,483 + EX31_RS10060 0.44 +0.8
218,484 - EX31_RS10060 0.44 -0.7
218,484 - EX31_RS10060 0.44 +1.4
218,529 - EX31_RS10060 0.49 +0.3
218,529 - EX31_RS10060 0.49 -0.1
218,545 - EX31_RS10060 0.50 +0.4
218,618 - EX31_RS10060 0.58 +0.0
218,687 + EX31_RS10060 0.66 -1.0
218,687 + EX31_RS10060 0.66 +1.5
218,688 - EX31_RS10060 0.66 +0.5
218,688 - EX31_RS10060 0.66 +0.5
218,752 + EX31_RS10060 0.73 +0.6
218,752 + EX31_RS10060 0.73 -0.1
218,753 - EX31_RS10060 0.73 -0.1
218,753 - EX31_RS10060 0.73 -0.4
218,759 + EX31_RS10060 0.74 -0.1
218,759 + EX31_RS10060 0.74 -0.5
218,760 - EX31_RS10060 0.74 +0.7
218,760 - EX31_RS10060 0.74 +1.6
218,760 - EX31_RS10060 0.74 -0.0
218,760 - EX31_RS10060 0.74 -0.3
218,761 + EX31_RS10060 0.74 -0.3
218,761 + EX31_RS10060 0.74 +0.4
218,762 - EX31_RS10060 0.74 +0.7
218,762 - EX31_RS10060 0.74 -0.5
218,762 - EX31_RS10060 0.74 +1.9
218,762 - EX31_RS10060 0.74 -1.3
218,762 - EX31_RS10060 0.74 +1.5
218,762 - EX31_RS10060 0.74 +0.8
218,803 - EX31_RS10060 0.78 +0.2
218,824 + EX31_RS10060 0.81 -0.3
218,824 + EX31_RS10060 0.81 -0.7
218,825 - EX31_RS10060 0.81 +0.2
218,825 - EX31_RS10060 0.81 +0.4
218,825 - EX31_RS10060 0.81 +0.9
218,825 - EX31_RS10060 0.81 -0.6
218,825 - EX31_RS10060 0.81 +0.6
218,825 - EX31_RS10060 0.81 -0.5
218,825 - EX31_RS10060 0.81 -0.8
218,846 - EX31_RS10060 0.83 +0.4
218,986 - +0.9
218,997 + +0.5
219,020 - +0.8
219,031 + +0.3
219,032 - -0.4
219,042 - +1.4

Or see this region's nucleotide sequence