Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09395 and EX31_RS09400 are separated by 170 nucleotides EX31_RS09400 and EX31_RS09405 are separated by 151 nucleotides
EX31_RS09395: EX31_RS09395 - N-acetylmuramoyl-L-alanine amidase, at 83,608 to 84,756
_RS09395
EX31_RS09400: EX31_RS09400 - deferrochelatase/peroxidase EfeB, at 84,927 to 86,222
_RS09400
EX31_RS09405: EX31_RS09405 - iron uptake system protein EfeO, at 86,374 to 87,501
_RS09405
Position (kb) 84
85
86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 83.948 kb on + strand, within EX31_RS09395 at 83.949 kb on - strand, within EX31_RS09395 at 83.984 kb on + strand, within EX31_RS09395 at 84.126 kb on - strand, within EX31_RS09395 at 84.136 kb on - strand, within EX31_RS09395 at 84.139 kb on + strand, within EX31_RS09395 at 84.236 kb on + strand, within EX31_RS09395 at 84.237 kb on - strand, within EX31_RS09395 at 84.237 kb on - strand, within EX31_RS09395 at 84.485 kb on - strand, within EX31_RS09395 at 84.555 kb on + strand, within EX31_RS09395 at 84.589 kb on - strand, within EX31_RS09395 at 84.602 kb on + strand, within EX31_RS09395 at 84.602 kb on + strand, within EX31_RS09395 at 84.602 kb on + strand, within EX31_RS09395 at 84.603 kb on - strand, within EX31_RS09395 at 84.684 kb on - strand at 84.757 kb on - strand at 84.846 kb on - strand at 84.924 kb on - strand at 84.955 kb on + strand at 85.017 kb on - strand at 85.017 kb on - strand at 85.018 kb on + strand at 85.018 kb on + strand at 85.018 kb on + strand at 85.018 kb on + strand at 85.018 kb on + strand at 85.018 kb on + strand at 85.019 kb on - strand at 85.019 kb on - strand at 85.019 kb on - strand at 85.019 kb on - strand at 85.019 kb on - strand at 85.145 kb on - strand, within EX31_RS09400 at 85.145 kb on - strand, within EX31_RS09400 at 85.145 kb on - strand, within EX31_RS09400 at 85.394 kb on - strand, within EX31_RS09400 at 85.559 kb on + strand, within EX31_RS09400 at 85.559 kb on + strand, within EX31_RS09400 at 85.591 kb on - strand, within EX31_RS09400 at 85.604 kb on - strand, within EX31_RS09400 at 85.638 kb on - strand, within EX31_RS09400 at 85.743 kb on - strand, within EX31_RS09400 at 86.027 kb on - strand, within EX31_RS09400 at 86.029 kb on + strand, within EX31_RS09400 at 86.030 kb on - strand, within EX31_RS09400 at 86.148 kb on + strand at 86.242 kb on - strand at 86.282 kb on + strand at 86.282 kb on + strand at 86.325 kb on + strand at 86.325 kb on + strand at 86.325 kb on + strand at 86.325 kb on + strand at 86.325 kb on + strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.380 kb on + strand at 86.380 kb on + strand at 86.381 kb on - strand at 86.381 kb on - strand at 86.501 kb on + strand, within EX31_RS09405 at 86.502 kb on - strand, within EX31_RS09405 at 86.506 kb on - strand, within EX31_RS09405 at 86.506 kb on - strand, within EX31_RS09405 at 86.782 kb on - strand, within EX31_RS09405 at 86.784 kb on - strand, within EX31_RS09405 at 86.784 kb on - strand, within EX31_RS09405 at 86.964 kb on - strand, within EX31_RS09405 at 86.964 kb on - strand, within EX31_RS09405 at 86.967 kb on - strand, within EX31_RS09405 at 86.967 kb on - strand, within EX31_RS09405 at 87.078 kb on - strand, within EX31_RS09405 at 87.078 kb on - strand, within EX31_RS09405 at 87.087 kb on - strand, within EX31_RS09405 at 87.204 kb on - strand, within EX31_RS09405
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 83,948 + EX31_RS09395 0.30 +0.3 83,949 - EX31_RS09395 0.30 -0.9 83,984 + EX31_RS09395 0.33 -0.8 84,126 - EX31_RS09395 0.45 +0.5 84,136 - EX31_RS09395 0.46 +0.3 84,139 + EX31_RS09395 0.46 -0.8 84,236 + EX31_RS09395 0.55 +0.6 84,237 - EX31_RS09395 0.55 -0.3 84,237 - EX31_RS09395 0.55 +1.3 84,485 - EX31_RS09395 0.76 +0.6 84,555 + EX31_RS09395 0.82 +1.1 84,589 - EX31_RS09395 0.85 +1.0 84,602 + EX31_RS09395 0.87 -3.0 84,602 + EX31_RS09395 0.87 -0.5 84,602 + EX31_RS09395 0.87 +0.2 84,603 - EX31_RS09395 0.87 +0.8 84,684 - +0.6 84,757 - -1.4 84,846 - +0.4 84,924 - -0.7 84,955 + +0.0 85,017 - +1.4 85,017 - +0.2 85,018 + -1.2 85,018 + -1.7 85,018 + -1.2 85,018 + +0.3 85,018 + +0.5 85,018 + +0.4 85,019 - -1.0 85,019 - +0.1 85,019 - +0.2 85,019 - -2.1 85,019 - +0.1 85,145 - EX31_RS09400 0.17 -0.0 85,145 - EX31_RS09400 0.17 -0.5 85,145 - EX31_RS09400 0.17 +0.3 85,394 - EX31_RS09400 0.36 +0.3 85,559 + EX31_RS09400 0.49 -0.0 85,559 + EX31_RS09400 0.49 +0.6 85,591 - EX31_RS09400 0.51 +1.4 85,604 - EX31_RS09400 0.52 +0.5 85,638 - EX31_RS09400 0.55 +0.8 85,743 - EX31_RS09400 0.63 +1.1 86,027 - EX31_RS09400 0.85 +0.8 86,029 + EX31_RS09400 0.85 +0.7 86,030 - EX31_RS09400 0.85 -0.7 86,148 + -0.2 86,242 - -0.7 86,282 + -0.5 86,282 + -0.8 86,325 + -1.0 86,325 + -0.4 86,325 + +1.0 86,325 + +1.5 86,325 + +1.5 86,326 - -0.0 86,326 - -3.6 86,326 - +2.2 86,326 - +0.2 86,326 - -1.0 86,326 - -0.6 86,326 - -0.5 86,326 - -0.1 86,326 - -2.2 86,326 - +0.7 86,380 + +0.4 86,380 + +0.5 86,381 - +0.9 86,381 - -0.8 86,501 + EX31_RS09405 0.11 +0.0 86,502 - EX31_RS09405 0.11 +0.5 86,506 - EX31_RS09405 0.12 +0.3 86,506 - EX31_RS09405 0.12 -0.6 86,782 - EX31_RS09405 0.36 -1.0 86,784 - EX31_RS09405 0.36 -1.7 86,784 - EX31_RS09405 0.36 -1.9 86,964 - EX31_RS09405 0.52 +0.8 86,964 - EX31_RS09405 0.52 +1.6 86,967 - EX31_RS09405 0.53 +1.5 86,967 - EX31_RS09405 0.53 +0.4 87,078 - EX31_RS09405 0.62 +1.2 87,078 - EX31_RS09405 0.62 -1.4 87,087 - EX31_RS09405 0.63 +0.8 87,204 - EX31_RS09405 0.74 -0.2
Or see this region's nucleotide sequence