Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09175 and EX31_RS09180 overlap by 4 nucleotides EX31_RS09180 and EX31_RS09185 are separated by 17 nucleotides EX31_RS09185 and EX31_RS09190 are separated by 1 nucleotides
EX31_RS09175: EX31_RS09175 - ATP-binding cassette domain-containing protein, at 31,541 to 32,656
_RS09175
EX31_RS09180: EX31_RS09180 - ABC transporter substrate-binding protein, at 32,653 to 34,170
_RS09180
EX31_RS09185: EX31_RS09185 - ABC transporter permease, at 34,188 to 35,132
_RS09185
EX31_RS09190: EX31_RS09190 - ABC transporter permease, at 35,134 to 36,009
_RS09190
Position (kb) 32
33
34
35 Strain fitness (log2 ratio) -2
-1
0
1
2 at 31.731 kb on + strand, within EX31_RS09175 at 31.769 kb on + strand, within EX31_RS09175 at 31.770 kb on - strand, within EX31_RS09175 at 32.212 kb on + strand, within EX31_RS09175 at 32.237 kb on + strand, within EX31_RS09175 at 32.238 kb on - strand, within EX31_RS09175 at 32.238 kb on - strand, within EX31_RS09175 at 32.368 kb on - strand, within EX31_RS09175 at 32.368 kb on - strand, within EX31_RS09175 at 32.693 kb on + strand at 32.696 kb on + strand at 32.697 kb on - strand at 32.795 kb on - strand at 32.857 kb on - strand, within EX31_RS09180 at 32.890 kb on + strand, within EX31_RS09180 at 32.980 kb on + strand, within EX31_RS09180 at 32.980 kb on + strand, within EX31_RS09180 at 32.980 kb on + strand, within EX31_RS09180 at 32.981 kb on - strand, within EX31_RS09180 at 33.354 kb on - strand, within EX31_RS09180 at 33.442 kb on + strand, within EX31_RS09180 at 33.443 kb on - strand, within EX31_RS09180 at 33.443 kb on - strand, within EX31_RS09180 at 33.443 kb on - strand, within EX31_RS09180 at 33.443 kb on - strand, within EX31_RS09180 at 33.483 kb on + strand, within EX31_RS09180 at 33.489 kb on + strand, within EX31_RS09180 at 33.580 kb on + strand, within EX31_RS09180 at 33.581 kb on - strand, within EX31_RS09180 at 33.581 kb on - strand, within EX31_RS09180 at 33.582 kb on + strand, within EX31_RS09180 at 33.582 kb on + strand, within EX31_RS09180 at 33.582 kb on + strand, within EX31_RS09180 at 33.583 kb on - strand, within EX31_RS09180 at 33.755 kb on + strand, within EX31_RS09180 at 33.755 kb on + strand, within EX31_RS09180 at 33.943 kb on + strand, within EX31_RS09180 at 33.943 kb on + strand, within EX31_RS09180 at 33.944 kb on - strand, within EX31_RS09180 at 34.008 kb on + strand, within EX31_RS09180 at 34.009 kb on - strand, within EX31_RS09180 at 34.018 kb on + strand, within EX31_RS09180 at 34.019 kb on - strand at 34.019 kb on - strand at 34.063 kb on + strand at 34.063 kb on + strand at 34.063 kb on + strand at 34.064 kb on - strand at 34.064 kb on - strand at 34.069 kb on + strand at 34.119 kb on - strand at 34.119 kb on - strand at 34.123 kb on + strand at 34.168 kb on + strand at 34.168 kb on + strand at 34.169 kb on - strand at 34.169 kb on - strand at 34.193 kb on - strand at 34.193 kb on - strand at 34.351 kb on - strand, within EX31_RS09185 at 34.450 kb on + strand, within EX31_RS09185 at 34.451 kb on - strand, within EX31_RS09185 at 34.643 kb on + strand, within EX31_RS09185 at 34.643 kb on + strand, within EX31_RS09185 at 34.643 kb on + strand, within EX31_RS09185 at 34.686 kb on + strand, within EX31_RS09185 at 34.686 kb on + strand, within EX31_RS09185 at 34.821 kb on + strand, within EX31_RS09185 at 34.822 kb on - strand, within EX31_RS09185 at 34.822 kb on - strand, within EX31_RS09185 at 34.822 kb on - strand, within EX31_RS09185 at 35.022 kb on + strand, within EX31_RS09185 at 35.097 kb on + strand at 35.098 kb on - strand at 35.098 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 31,731 + EX31_RS09175 0.17 -1.4 31,769 + EX31_RS09175 0.20 +0.0 31,770 - EX31_RS09175 0.21 -0.2 32,212 + EX31_RS09175 0.60 +0.2 32,237 + EX31_RS09175 0.62 +0.3 32,238 - EX31_RS09175 0.62 -1.2 32,238 - EX31_RS09175 0.62 -0.6 32,368 - EX31_RS09175 0.74 +0.3 32,368 - EX31_RS09175 0.74 +0.3 32,693 + +0.5 32,696 + +0.8 32,697 - -1.7 32,795 - -0.7 32,857 - EX31_RS09180 0.13 +1.1 32,890 + EX31_RS09180 0.16 +0.1 32,980 + EX31_RS09180 0.22 +0.5 32,980 + EX31_RS09180 0.22 -0.4 32,980 + EX31_RS09180 0.22 +0.6 32,981 - EX31_RS09180 0.22 +0.6 33,354 - EX31_RS09180 0.46 -0.2 33,442 + EX31_RS09180 0.52 -0.2 33,443 - EX31_RS09180 0.52 +0.1 33,443 - EX31_RS09180 0.52 -0.5 33,443 - EX31_RS09180 0.52 +1.0 33,443 - EX31_RS09180 0.52 +0.8 33,483 + EX31_RS09180 0.55 +1.0 33,489 + EX31_RS09180 0.55 -2.2 33,580 + EX31_RS09180 0.61 +0.5 33,581 - EX31_RS09180 0.61 +0.6 33,581 - EX31_RS09180 0.61 +0.7 33,582 + EX31_RS09180 0.61 +1.5 33,582 + EX31_RS09180 0.61 +0.2 33,582 + EX31_RS09180 0.61 +0.4 33,583 - EX31_RS09180 0.61 +1.3 33,755 + EX31_RS09180 0.73 -0.2 33,755 + EX31_RS09180 0.73 +0.9 33,943 + EX31_RS09180 0.85 +0.0 33,943 + EX31_RS09180 0.85 +1.2 33,944 - EX31_RS09180 0.85 +1.0 34,008 + EX31_RS09180 0.89 +0.2 34,009 - EX31_RS09180 0.89 -0.5 34,018 + EX31_RS09180 0.90 -0.4 34,019 - +0.8 34,019 - +1.2 34,063 + -0.2 34,063 + -0.2 34,063 + -1.9 34,064 - +0.8 34,064 - +0.3 34,069 + +0.3 34,119 - +0.5 34,119 - -0.2 34,123 + +1.4 34,168 + -2.4 34,168 + -0.7 34,169 - -1.4 34,169 - -1.1 34,193 - -1.0 34,193 - +1.8 34,351 - EX31_RS09185 0.17 +1.5 34,450 + EX31_RS09185 0.28 -0.5 34,451 - EX31_RS09185 0.28 +0.7 34,643 + EX31_RS09185 0.48 +0.3 34,643 + EX31_RS09185 0.48 +0.5 34,643 + EX31_RS09185 0.48 +1.2 34,686 + EX31_RS09185 0.53 -0.1 34,686 + EX31_RS09185 0.53 +0.8 34,821 + EX31_RS09185 0.67 +0.5 34,822 - EX31_RS09185 0.67 +0.5 34,822 - EX31_RS09185 0.67 -0.1 34,822 - EX31_RS09185 0.67 +0.3 35,022 + EX31_RS09185 0.88 +0.3 35,097 + -2.6 35,098 - +0.4 35,098 - +0.4
Or see this region's nucleotide sequence