Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07615 and EX31_RS07620 are separated by 112 nucleotides EX31_RS07620 and EX31_RS07625 are separated by 211 nucleotides EX31_RS07625 and EX31_RS07630 overlap by 10 nucleotides EX31_RS07630 and EX31_RS07635 overlap by 20 nucleotides EX31_RS07635 and EX31_RS07640 are separated by 0 nucleotides
EX31_RS07615: EX31_RS07615 - replication endonuclease, at 11,472 to 13,400
_RS07615
EX31_RS07620: EX31_RS07620 - hypothetical protein, at 13,513 to 13,707
_RS07620
EX31_RS07625: EX31_RS07625 - tail protein X, at 13,919 to 14,122
_RS07625
EX31_RS07630: EX31_RS07630 - hypothetical protein, at 14,113 to 14,334
_RS07630
EX31_RS07635: EX31_RS07635 - lysozyme, at 14,315 to 14,824
_RS07635
EX31_RS07640: EX31_RS07640 - lysis regulatory protein, at 14,825 to 15,253
_RS07640
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 13.020 kb on + strand, within EX31_RS07615 at 13.098 kb on + strand, within EX31_RS07615 at 13.098 kb on + strand, within EX31_RS07615 at 13.098 kb on + strand, within EX31_RS07615 at 13.099 kb on - strand, within EX31_RS07615 at 13.099 kb on - strand, within EX31_RS07615 at 13.100 kb on + strand, within EX31_RS07615 at 13.101 kb on - strand, within EX31_RS07615 at 13.101 kb on - strand, within EX31_RS07615 at 13.101 kb on - strand, within EX31_RS07615 at 13.101 kb on - strand, within EX31_RS07615 at 13.101 kb on - strand, within EX31_RS07615 at 13.118 kb on + strand, within EX31_RS07615 at 13.119 kb on - strand, within EX31_RS07615 at 13.119 kb on - strand, within EX31_RS07615 at 13.185 kb on + strand, within EX31_RS07615 at 13.203 kb on - strand, within EX31_RS07615 at 13.203 kb on - strand, within EX31_RS07615 at 13.218 kb on + strand at 13.218 kb on + strand at 13.218 kb on + strand at 13.218 kb on + strand at 13.218 kb on + strand at 13.219 kb on - strand at 13.219 kb on - strand at 13.262 kb on + strand at 13.262 kb on + strand at 13.262 kb on + strand at 13.262 kb on + strand at 13.263 kb on - strand at 13.263 kb on - strand at 13.263 kb on - strand at 13.263 kb on - strand at 13.263 kb on - strand at 13.296 kb on + strand at 13.296 kb on + strand at 13.296 kb on + strand at 13.296 kb on + strand at 13.296 kb on + strand at 13.297 kb on - strand at 13.297 kb on - strand at 13.297 kb on - strand at 13.297 kb on - strand at 13.299 kb on - strand at 13.300 kb on - strand at 13.319 kb on + strand at 13.320 kb on - strand at 13.320 kb on - strand at 13.320 kb on - strand at 13.321 kb on + strand at 13.340 kb on + strand at 13.341 kb on - strand at 13.341 kb on - strand at 13.440 kb on + strand at 13.457 kb on + strand at 13.457 kb on + strand at 13.457 kb on + strand at 13.457 kb on + strand at 13.457 kb on + strand at 13.457 kb on + strand at 13.457 kb on + strand at 13.458 kb on - strand at 13.458 kb on - strand at 13.527 kb on + strand at 13.538 kb on + strand, within EX31_RS07620 at 13.538 kb on + strand, within EX31_RS07620 at 13.553 kb on + strand, within EX31_RS07620 at 13.675 kb on + strand, within EX31_RS07620 at 13.676 kb on - strand, within EX31_RS07620 at 13.676 kb on - strand, within EX31_RS07620 at 13.728 kb on - strand at 13.730 kb on + strand at 13.730 kb on + strand at 13.730 kb on + strand at 13.730 kb on + strand at 13.741 kb on - strand at 13.811 kb on + strand at 13.811 kb on + strand at 13.811 kb on + strand at 13.811 kb on + strand at 13.812 kb on - strand at 13.812 kb on - strand at 13.812 kb on - strand at 13.973 kb on + strand, within EX31_RS07625 at 13.973 kb on + strand, within EX31_RS07625 at 13.974 kb on - strand, within EX31_RS07625 at 14.007 kb on - strand, within EX31_RS07625 at 14.007 kb on - strand, within EX31_RS07625 at 14.046 kb on + strand, within EX31_RS07625 at 14.046 kb on + strand, within EX31_RS07625 at 14.047 kb on - strand, within EX31_RS07625 at 14.047 kb on - strand, within EX31_RS07625 at 14.068 kb on + strand, within EX31_RS07625 at 14.069 kb on - strand, within EX31_RS07625 at 14.069 kb on - strand, within EX31_RS07625 at 14.113 kb on - strand at 14.152 kb on + strand, within EX31_RS07630 at 14.153 kb on - strand, within EX31_RS07630 at 14.153 kb on - strand, within EX31_RS07630 at 14.258 kb on - strand, within EX31_RS07630 at 14.275 kb on + strand, within EX31_RS07630 at 14.276 kb on - strand, within EX31_RS07630 at 14.292 kb on + strand, within EX31_RS07630 at 14.292 kb on + strand, within EX31_RS07630 at 14.293 kb on - strand, within EX31_RS07630 at 14.293 kb on - strand, within EX31_RS07630 at 14.315 kb on - strand at 14.332 kb on + strand at 14.341 kb on + strand at 14.342 kb on - strand at 14.367 kb on + strand, within EX31_RS07635 at 14.367 kb on + strand, within EX31_RS07635 at 14.456 kb on + strand, within EX31_RS07635 at 14.476 kb on - strand, within EX31_RS07635 at 14.597 kb on - strand, within EX31_RS07635 at 14.674 kb on + strand, within EX31_RS07635 at 14.674 kb on + strand, within EX31_RS07635 at 14.800 kb on + strand at 14.800 kb on + strand at 14.800 kb on + strand at 14.800 kb on + strand at 14.801 kb on - strand at 14.801 kb on - strand at 14.801 kb on - strand at 14.801 kb on - strand at 14.801 kb on - strand at 14.863 kb on - strand at 14.898 kb on + strand, within EX31_RS07640 at 14.899 kb on - strand, within EX31_RS07640 at 14.899 kb on - strand, within EX31_RS07640 at 14.945 kb on - strand, within EX31_RS07640 at 14.952 kb on + strand, within EX31_RS07640 at 14.952 kb on + strand, within EX31_RS07640 at 14.952 kb on + strand, within EX31_RS07640 at 14.952 kb on + strand, within EX31_RS07640 at 14.952 kb on + strand, within EX31_RS07640 at 14.952 kb on + strand, within EX31_RS07640 at 14.952 kb on + strand, within EX31_RS07640 at 14.953 kb on - strand, within EX31_RS07640 at 14.953 kb on - strand, within EX31_RS07640 at 14.953 kb on - strand, within EX31_RS07640 at 14.953 kb on - strand, within EX31_RS07640 at 14.953 kb on - strand, within EX31_RS07640 at 14.953 kb on - strand, within EX31_RS07640
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 13,020 + EX31_RS07615 0.80 -0.0 13,098 + EX31_RS07615 0.84 -0.0 13,098 + EX31_RS07615 0.84 -1.2 13,098 + EX31_RS07615 0.84 +0.8 13,099 - EX31_RS07615 0.84 -0.6 13,099 - EX31_RS07615 0.84 +0.6 13,100 + EX31_RS07615 0.84 -0.1 13,101 - EX31_RS07615 0.84 +0.0 13,101 - EX31_RS07615 0.84 +0.4 13,101 - EX31_RS07615 0.84 +0.6 13,101 - EX31_RS07615 0.84 +0.3 13,101 - EX31_RS07615 0.84 -0.3 13,118 + EX31_RS07615 0.85 +0.2 13,119 - EX31_RS07615 0.85 +1.1 13,119 - EX31_RS07615 0.85 -0.7 13,185 + EX31_RS07615 0.89 +0.1 13,203 - EX31_RS07615 0.90 -0.4 13,203 - EX31_RS07615 0.90 +0.4 13,218 + -0.2 13,218 + +0.5 13,218 + +0.8 13,218 + -0.7 13,218 + +0.7 13,219 - +0.0 13,219 - +0.4 13,262 + +0.8 13,262 + +1.5 13,262 + -0.5 13,262 + +1.2 13,263 - +0.4 13,263 - -0.2 13,263 - -0.5 13,263 - +0.6 13,263 - +0.4 13,296 + +0.7 13,296 + +0.3 13,296 + +0.7 13,296 + -0.3 13,296 + +0.1 13,297 - +0.8 13,297 - -0.7 13,297 - -0.4 13,297 - -0.4 13,299 - -0.2 13,300 - +0.2 13,319 + -0.2 13,320 - +0.0 13,320 - +1.1 13,320 - +1.1 13,321 + +0.1 13,340 + +0.4 13,341 - +0.2 13,341 - -0.1 13,440 + +0.9 13,457 + -2.2 13,457 + -1.1 13,457 + -0.1 13,457 + -0.7 13,457 + -0.2 13,457 + -0.9 13,457 + -0.0 13,458 - +0.6 13,458 - -0.1 13,527 + -0.4 13,538 + EX31_RS07620 0.13 +1.6 13,538 + EX31_RS07620 0.13 -0.5 13,553 + EX31_RS07620 0.21 -0.1 13,675 + EX31_RS07620 0.83 -0.6 13,676 - EX31_RS07620 0.84 +1.1 13,676 - EX31_RS07620 0.84 +0.4 13,728 - -0.4 13,730 + +0.1 13,730 + +1.9 13,730 + +0.2 13,730 + -0.0 13,741 - +0.1 13,811 + -0.0 13,811 + -0.4 13,811 + -1.2 13,811 + -0.4 13,812 - -0.3 13,812 - +0.4 13,812 - +0.9 13,973 + EX31_RS07625 0.26 +0.6 13,973 + EX31_RS07625 0.26 +0.3 13,974 - EX31_RS07625 0.27 +0.4 14,007 - EX31_RS07625 0.43 +0.0 14,007 - EX31_RS07625 0.43 +1.0 14,046 + EX31_RS07625 0.62 +0.6 14,046 + EX31_RS07625 0.62 +0.7 14,047 - EX31_RS07625 0.63 +1.2 14,047 - EX31_RS07625 0.63 -1.8 14,068 + EX31_RS07625 0.73 +0.1 14,069 - EX31_RS07625 0.74 -0.7 14,069 - EX31_RS07625 0.74 +0.4 14,113 - +0.6 14,152 + EX31_RS07630 0.18 +0.8 14,153 - EX31_RS07630 0.18 +0.5 14,153 - EX31_RS07630 0.18 -1.1 14,258 - EX31_RS07630 0.65 +0.2 14,275 + EX31_RS07630 0.73 +0.5 14,276 - EX31_RS07630 0.73 -0.6 14,292 + EX31_RS07630 0.81 +0.3 14,292 + EX31_RS07630 0.81 +0.2 14,293 - EX31_RS07630 0.81 -0.2 14,293 - EX31_RS07630 0.81 +0.9 14,315 - +0.1 14,332 + -0.0 14,341 + +1.0 14,342 - +0.9 14,367 + EX31_RS07635 0.10 -0.4 14,367 + EX31_RS07635 0.10 -1.1 14,456 + EX31_RS07635 0.28 -0.1 14,476 - EX31_RS07635 0.32 +0.1 14,597 - EX31_RS07635 0.55 +1.2 14,674 + EX31_RS07635 0.70 +0.6 14,674 + EX31_RS07635 0.70 +0.2 14,800 + +0.4 14,800 + -0.3 14,800 + +0.4 14,800 + -0.5 14,801 - -0.1 14,801 - +0.8 14,801 - +1.1 14,801 - -0.7 14,801 - +0.3 14,863 - +0.6 14,898 + EX31_RS07640 0.17 -0.8 14,899 - EX31_RS07640 0.17 +0.5 14,899 - EX31_RS07640 0.17 +0.5 14,945 - EX31_RS07640 0.28 +0.4 14,952 + EX31_RS07640 0.30 -0.2 14,952 + EX31_RS07640 0.30 +0.4 14,952 + EX31_RS07640 0.30 +0.7 14,952 + EX31_RS07640 0.30 -0.1 14,952 + EX31_RS07640 0.30 -0.3 14,952 + EX31_RS07640 0.30 +0.2 14,952 + EX31_RS07640 0.30 +0.8 14,953 - EX31_RS07640 0.30 +0.6 14,953 - EX31_RS07640 0.30 -0.1 14,953 - EX31_RS07640 0.30 +1.1 14,953 - EX31_RS07640 0.30 +0.7 14,953 - EX31_RS07640 0.30 -0.1 14,953 - EX31_RS07640 0.30 -1.1
Or see this region's nucleotide sequence