Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06970 and EX31_RS06975 are separated by 134 nucleotides EX31_RS06975 and EX31_RS06980 are separated by 162 nucleotides EX31_RS06980 and EX31_RS06985 overlap by 14 nucleotides
EX31_RS06970: EX31_RS06970 - mannose-6-phosphate isomerase, at 182,721 to 183,902
_RS06970
EX31_RS06975: EX31_RS06975 - YdgA family protein, at 184,037 to 185,578
_RS06975
EX31_RS06980: EX31_RS06980 - iron ABC transporter ATP-binding protein FetA, at 185,741 to 186,412
_RS06980
EX31_RS06985: EX31_RS06985 - iron export ABC transporter permease subunit FetB, at 186,399 to 187,172
_RS06985
Position (kb) 184
185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 183.097 kb on - strand, within EX31_RS06970 at 183.302 kb on + strand, within EX31_RS06970 at 183.302 kb on + strand, within EX31_RS06970 at 183.302 kb on + strand, within EX31_RS06970 at 183.378 kb on - strand, within EX31_RS06970 at 183.433 kb on + strand, within EX31_RS06970 at 183.434 kb on - strand, within EX31_RS06970 at 183.434 kb on - strand, within EX31_RS06970 at 183.434 kb on - strand, within EX31_RS06970 at 183.489 kb on + strand, within EX31_RS06970 at 183.562 kb on - strand, within EX31_RS06970 at 183.755 kb on + strand, within EX31_RS06970 at 183.756 kb on - strand, within EX31_RS06970 at 183.965 kb on + strand at 183.966 kb on - strand at 183.979 kb on + strand at 184.036 kb on + strand at 184.036 kb on + strand at 184.036 kb on + strand at 184.071 kb on + strand at 184.132 kb on + strand at 184.132 kb on + strand at 184.132 kb on + strand at 184.535 kb on + strand, within EX31_RS06975 at 184.723 kb on + strand, within EX31_RS06975 at 184.723 kb on + strand, within EX31_RS06975 at 184.810 kb on + strand, within EX31_RS06975 at 184.849 kb on + strand, within EX31_RS06975 at 184.849 kb on + strand, within EX31_RS06975 at 184.871 kb on + strand, within EX31_RS06975 at 184.871 kb on + strand, within EX31_RS06975 at 184.872 kb on - strand, within EX31_RS06975 at 184.872 kb on - strand, within EX31_RS06975 at 184.979 kb on + strand, within EX31_RS06975 at 184.979 kb on + strand, within EX31_RS06975 at 184.979 kb on + strand, within EX31_RS06975 at 184.979 kb on + strand, within EX31_RS06975 at 184.979 kb on + strand, within EX31_RS06975 at 184.979 kb on + strand, within EX31_RS06975 at 184.979 kb on + strand, within EX31_RS06975 at 184.979 kb on + strand, within EX31_RS06975 at 184.980 kb on - strand, within EX31_RS06975 at 184.980 kb on - strand, within EX31_RS06975 at 185.146 kb on + strand, within EX31_RS06975 at 185.226 kb on + strand, within EX31_RS06975 at 185.404 kb on + strand, within EX31_RS06975 at 185.404 kb on + strand, within EX31_RS06975 at 185.408 kb on - strand, within EX31_RS06975 at 185.576 kb on + strand at 185.711 kb on - strand at 185.785 kb on + strand at 185.846 kb on - strand, within EX31_RS06980 at 185.882 kb on - strand, within EX31_RS06980 at 185.882 kb on - strand, within EX31_RS06980 at 185.896 kb on + strand, within EX31_RS06980 at 185.896 kb on + strand, within EX31_RS06980 at 185.934 kb on - strand, within EX31_RS06980 at 185.994 kb on - strand, within EX31_RS06980 at 186.015 kb on + strand, within EX31_RS06980 at 186.015 kb on + strand, within EX31_RS06980 at 186.256 kb on + strand, within EX31_RS06980 at 186.410 kb on + strand at 186.411 kb on - strand at 186.413 kb on + strand at 186.413 kb on + strand at 186.413 kb on + strand at 186.413 kb on + strand at 186.532 kb on + strand, within EX31_RS06985
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 183,097 - EX31_RS06970 0.32 +0.9 183,302 + EX31_RS06970 0.49 +0.4 183,302 + EX31_RS06970 0.49 +1.2 183,302 + EX31_RS06970 0.49 +0.6 183,378 - EX31_RS06970 0.56 -2.4 183,433 + EX31_RS06970 0.60 -1.1 183,434 - EX31_RS06970 0.60 +1.1 183,434 - EX31_RS06970 0.60 +0.4 183,434 - EX31_RS06970 0.60 -0.1 183,489 + EX31_RS06970 0.65 +0.5 183,562 - EX31_RS06970 0.71 -1.2 183,755 + EX31_RS06970 0.87 +1.3 183,756 - EX31_RS06970 0.88 +2.1 183,965 + -0.8 183,966 - +0.7 183,979 + +0.2 184,036 + -0.4 184,036 + +1.4 184,036 + +1.6 184,071 + +0.8 184,132 + -0.1 184,132 + +0.2 184,132 + +0.3 184,535 + EX31_RS06975 0.32 +0.6 184,723 + EX31_RS06975 0.44 +0.7 184,723 + EX31_RS06975 0.44 -0.6 184,810 + EX31_RS06975 0.50 +0.0 184,849 + EX31_RS06975 0.53 +0.9 184,849 + EX31_RS06975 0.53 +1.2 184,871 + EX31_RS06975 0.54 +0.8 184,871 + EX31_RS06975 0.54 -1.3 184,872 - EX31_RS06975 0.54 +1.7 184,872 - EX31_RS06975 0.54 +1.1 184,979 + EX31_RS06975 0.61 +1.2 184,979 + EX31_RS06975 0.61 +0.8 184,979 + EX31_RS06975 0.61 +0.3 184,979 + EX31_RS06975 0.61 +1.0 184,979 + EX31_RS06975 0.61 +0.7 184,979 + EX31_RS06975 0.61 +2.4 184,979 + EX31_RS06975 0.61 -0.6 184,979 + EX31_RS06975 0.61 -0.0 184,980 - EX31_RS06975 0.61 -0.9 184,980 - EX31_RS06975 0.61 +0.1 185,146 + EX31_RS06975 0.72 +1.0 185,226 + EX31_RS06975 0.77 +0.8 185,404 + EX31_RS06975 0.89 -0.7 185,404 + EX31_RS06975 0.89 -0.5 185,408 - EX31_RS06975 0.89 +0.4 185,576 + -0.6 185,711 - +0.4 185,785 + -0.2 185,846 - EX31_RS06980 0.16 -1.8 185,882 - EX31_RS06980 0.21 +1.0 185,882 - EX31_RS06980 0.21 -2.8 185,896 + EX31_RS06980 0.23 +0.0 185,896 + EX31_RS06980 0.23 -1.5 185,934 - EX31_RS06980 0.29 -0.3 185,994 - EX31_RS06980 0.38 -0.3 186,015 + EX31_RS06980 0.41 -1.1 186,015 + EX31_RS06980 0.41 +0.5 186,256 + EX31_RS06980 0.77 -0.8 186,410 + +0.0 186,411 - +2.1 186,413 + +0.3 186,413 + +0.7 186,413 + -2.5 186,413 + -1.9 186,532 + EX31_RS06985 0.17 +0.3
Or see this region's nucleotide sequence