Strain Fitness in Rahnella sp. WP5 around EX31_RS06825

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06815 and EX31_RS06820 are separated by 18 nucleotidesEX31_RS06820 and EX31_RS06825 are separated by 13 nucleotidesEX31_RS06825 and EX31_RS06830 are separated by 38 nucleotidesEX31_RS06830 and EX31_RS06835 are separated by 21 nucleotides EX31_RS06815: EX31_RS06815 - argininosuccinate lyase, at 150,616 to 152,043 _RS06815 EX31_RS06820: EX31_RS06820 - amino acid ABC transporter permease, at 152,062 to 152,934 _RS06820 EX31_RS06825: EX31_RS06825 - amino acid ABC transporter ATP-binding protein, at 152,948 to 153,712 _RS06825 EX31_RS06830: EX31_RS06830 - ABC transporter substrate-binding protein, at 153,751 to 154,572 _RS06830 EX31_RS06835: EX31_RS06835 - polysaccharide deacetylase, at 154,594 to 155,448 _RS06835 Position (kb) 152 153 154Strain fitness (log2 ratio) -2 -1 0 1at 152.017 kb on - strandat 152.018 kb on + strandat 152.018 kb on + strandat 152.018 kb on + strandat 152.019 kb on - strandat 152.024 kb on - strandat 152.039 kb on + strandat 152.128 kb on + strandat 152.128 kb on + strandat 152.143 kb on + strandat 152.147 kb on - strandat 152.233 kb on + strand, within EX31_RS06820at 152.392 kb on + strand, within EX31_RS06820at 152.394 kb on + strand, within EX31_RS06820at 152.394 kb on + strand, within EX31_RS06820at 152.394 kb on + strand, within EX31_RS06820at 152.394 kb on + strand, within EX31_RS06820at 152.563 kb on + strand, within EX31_RS06820at 152.563 kb on + strand, within EX31_RS06820at 152.776 kb on + strand, within EX31_RS06820at 152.776 kb on + strand, within EX31_RS06820at 152.777 kb on - strand, within EX31_RS06820at 152.794 kb on + strand, within EX31_RS06820at 152.794 kb on + strand, within EX31_RS06820at 152.795 kb on - strand, within EX31_RS06820at 152.896 kb on + strandat 152.896 kb on + strandat 152.959 kb on + strandat 152.980 kb on + strandat 152.984 kb on + strandat 152.984 kb on + strandat 152.985 kb on - strandat 152.985 kb on - strandat 153.231 kb on + strand, within EX31_RS06825at 153.231 kb on + strand, within EX31_RS06825at 153.232 kb on - strand, within EX31_RS06825at 153.370 kb on + strand, within EX31_RS06825at 153.573 kb on + strand, within EX31_RS06825at 153.574 kb on - strand, within EX31_RS06825at 153.630 kb on + strand, within EX31_RS06825at 153.631 kb on - strand, within EX31_RS06825at 153.652 kb on + strandat 153.849 kb on + strand, within EX31_RS06830at 154.091 kb on - strand, within EX31_RS06830at 154.093 kb on + strand, within EX31_RS06830at 154.093 kb on + strand, within EX31_RS06830at 154.093 kb on + strand, within EX31_RS06830at 154.114 kb on + strand, within EX31_RS06830at 154.115 kb on - strand, within EX31_RS06830at 154.115 kb on - strand, within EX31_RS06830at 154.115 kb on - strand, within EX31_RS06830at 154.117 kb on - strand, within EX31_RS06830at 154.227 kb on + strand, within EX31_RS06830at 154.227 kb on + strand, within EX31_RS06830at 154.228 kb on - strand, within EX31_RS06830at 154.351 kb on + strand, within EX31_RS06830at 154.378 kb on + strand, within EX31_RS06830at 154.379 kb on - strand, within EX31_RS06830at 154.622 kb on + strandat 154.622 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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152,017 - +0.5
152,018 + -0.2
152,018 + +0.0
152,018 + -1.8
152,019 - -0.7
152,024 - +0.8
152,039 + -0.3
152,128 + -2.3
152,128 + -0.1
152,143 + -0.7
152,147 - +1.2
152,233 + EX31_RS06820 0.20 +1.1
152,392 + EX31_RS06820 0.38 -1.1
152,394 + EX31_RS06820 0.38 +0.3
152,394 + EX31_RS06820 0.38 +0.0
152,394 + EX31_RS06820 0.38 -0.1
152,394 + EX31_RS06820 0.38 +0.3
152,563 + EX31_RS06820 0.57 +0.2
152,563 + EX31_RS06820 0.57 -0.7
152,776 + EX31_RS06820 0.82 -2.0
152,776 + EX31_RS06820 0.82 -0.5
152,777 - EX31_RS06820 0.82 -0.3
152,794 + EX31_RS06820 0.84 -1.3
152,794 + EX31_RS06820 0.84 +0.5
152,795 - EX31_RS06820 0.84 +1.2
152,896 + +0.6
152,896 + +0.8
152,959 + -1.7
152,980 + +1.0
152,984 + +0.4
152,984 + -0.6
152,985 - -0.4
152,985 - -0.7
153,231 + EX31_RS06825 0.37 +0.8
153,231 + EX31_RS06825 0.37 +0.1
153,232 - EX31_RS06825 0.37 -0.2
153,370 + EX31_RS06825 0.55 +1.3
153,573 + EX31_RS06825 0.82 -0.1
153,574 - EX31_RS06825 0.82 +0.8
153,630 + EX31_RS06825 0.89 +0.6
153,631 - EX31_RS06825 0.89 +0.6
153,652 + +0.3
153,849 + EX31_RS06830 0.12 +0.0
154,091 - EX31_RS06830 0.41 +0.3
154,093 + EX31_RS06830 0.42 +0.2
154,093 + EX31_RS06830 0.42 +0.6
154,093 + EX31_RS06830 0.42 -1.4
154,114 + EX31_RS06830 0.44 -1.3
154,115 - EX31_RS06830 0.44 -0.1
154,115 - EX31_RS06830 0.44 -2.4
154,115 - EX31_RS06830 0.44 +0.7
154,117 - EX31_RS06830 0.45 -0.5
154,227 + EX31_RS06830 0.58 +0.6
154,227 + EX31_RS06830 0.58 -0.4
154,228 - EX31_RS06830 0.58 -1.3
154,351 + EX31_RS06830 0.73 +0.2
154,378 + EX31_RS06830 0.76 -0.6
154,379 - EX31_RS06830 0.76 +0.3
154,622 + +0.3
154,622 + +0.8

Or see this region's nucleotide sequence