Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06355 and EX31_RS06360 are separated by 113 nucleotides EX31_RS06360 and EX31_RS06365 are separated by 79 nucleotides
EX31_RS06355: EX31_RS06355 - MFS transporter, at 34,489 to 35,691
_RS06355
EX31_RS06360: EX31_RS06360 - LysR family transcriptional regulator, at 35,805 to 36,740
_RS06360
EX31_RS06365: EX31_RS06365 - zinc transporter ZntB, at 36,820 to 37,803
_RS06365
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 34.888 kb on + strand, within EX31_RS06355 at 34.962 kb on + strand, within EX31_RS06355 at 34.963 kb on - strand, within EX31_RS06355 at 35.040 kb on + strand, within EX31_RS06355 at 35.171 kb on + strand, within EX31_RS06355 at 35.171 kb on + strand, within EX31_RS06355 at 35.171 kb on + strand, within EX31_RS06355 at 35.171 kb on + strand, within EX31_RS06355 at 35.172 kb on - strand, within EX31_RS06355 at 35.172 kb on - strand, within EX31_RS06355 at 35.172 kb on - strand, within EX31_RS06355 at 35.172 kb on - strand, within EX31_RS06355 at 35.172 kb on - strand, within EX31_RS06355 at 35.192 kb on + strand, within EX31_RS06355 at 35.192 kb on + strand, within EX31_RS06355 at 35.193 kb on - strand, within EX31_RS06355 at 35.436 kb on + strand, within EX31_RS06355 at 35.436 kb on + strand, within EX31_RS06355 at 35.437 kb on - strand, within EX31_RS06355 at 35.562 kb on + strand, within EX31_RS06355 at 35.585 kb on + strand at 35.586 kb on - strand at 35.586 kb on - strand at 35.679 kb on + strand at 35.691 kb on + strand at 35.708 kb on - strand at 35.710 kb on + strand at 35.710 kb on + strand at 35.710 kb on + strand at 35.710 kb on + strand at 35.711 kb on - strand at 35.711 kb on - strand at 35.724 kb on + strand at 35.724 kb on + strand at 35.724 kb on + strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.758 kb on + strand at 35.761 kb on - strand at 35.761 kb on - strand at 35.794 kb on - strand at 35.828 kb on + strand at 35.864 kb on + strand at 35.864 kb on + strand at 35.865 kb on - strand at 36.025 kb on - strand, within EX31_RS06360 at 36.025 kb on - strand, within EX31_RS06360 at 36.040 kb on + strand, within EX31_RS06360 at 36.076 kb on + strand, within EX31_RS06360 at 36.076 kb on + strand, within EX31_RS06360 at 36.076 kb on + strand, within EX31_RS06360 at 36.076 kb on + strand, within EX31_RS06360 at 36.172 kb on + strand, within EX31_RS06360 at 36.242 kb on + strand, within EX31_RS06360 at 36.317 kb on + strand, within EX31_RS06360 at 36.317 kb on + strand, within EX31_RS06360 at 36.317 kb on + strand, within EX31_RS06360 at 36.318 kb on - strand, within EX31_RS06360 at 36.318 kb on - strand, within EX31_RS06360 at 36.318 kb on - strand, within EX31_RS06360 at 36.408 kb on + strand, within EX31_RS06360 at 36.425 kb on + strand, within EX31_RS06360 at 36.425 kb on + strand, within EX31_RS06360 at 36.496 kb on + strand, within EX31_RS06360 at 36.496 kb on + strand, within EX31_RS06360 at 36.496 kb on + strand, within EX31_RS06360 at 36.497 kb on - strand, within EX31_RS06360 at 36.498 kb on + strand, within EX31_RS06360 at 36.498 kb on + strand, within EX31_RS06360 at 36.498 kb on + strand, within EX31_RS06360 at 36.498 kb on + strand, within EX31_RS06360 at 36.499 kb on - strand, within EX31_RS06360 at 36.509 kb on + strand, within EX31_RS06360 at 36.509 kb on + strand, within EX31_RS06360 at 36.587 kb on - strand, within EX31_RS06360 at 36.595 kb on + strand, within EX31_RS06360 at 36.598 kb on + strand, within EX31_RS06360 at 36.646 kb on - strand, within EX31_RS06360 at 36.752 kb on + strand at 36.775 kb on - strand at 36.787 kb on - strand at 36.866 kb on - strand at 36.933 kb on + strand, within EX31_RS06365 at 36.933 kb on + strand, within EX31_RS06365 at 36.994 kb on - strand, within EX31_RS06365 at 37.056 kb on + strand, within EX31_RS06365 at 37.104 kb on + strand, within EX31_RS06365 at 37.104 kb on + strand, within EX31_RS06365 at 37.417 kb on + strand, within EX31_RS06365 at 37.417 kb on + strand, within EX31_RS06365 at 37.417 kb on + strand, within EX31_RS06365 at 37.418 kb on - strand, within EX31_RS06365 at 37.418 kb on - strand, within EX31_RS06365 at 37.560 kb on + strand, within EX31_RS06365 at 37.621 kb on + strand, within EX31_RS06365 at 37.621 kb on + strand, within EX31_RS06365 at 37.621 kb on + strand, within EX31_RS06365 at 37.710 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 34,888 + EX31_RS06355 0.33 -0.2 34,962 + EX31_RS06355 0.39 +0.2 34,963 - EX31_RS06355 0.39 +0.7 35,040 + EX31_RS06355 0.46 +0.1 35,171 + EX31_RS06355 0.57 -1.9 35,171 + EX31_RS06355 0.57 -1.2 35,171 + EX31_RS06355 0.57 +0.4 35,171 + EX31_RS06355 0.57 -0.1 35,172 - EX31_RS06355 0.57 -0.2 35,172 - EX31_RS06355 0.57 -0.3 35,172 - EX31_RS06355 0.57 -0.6 35,172 - EX31_RS06355 0.57 +0.1 35,172 - EX31_RS06355 0.57 -0.7 35,192 + EX31_RS06355 0.58 +0.9 35,192 + EX31_RS06355 0.58 -0.3 35,193 - EX31_RS06355 0.59 -2.5 35,436 + EX31_RS06355 0.79 +0.9 35,436 + EX31_RS06355 0.79 +0.3 35,437 - EX31_RS06355 0.79 +0.8 35,562 + EX31_RS06355 0.89 -0.2 35,585 + +1.5 35,586 - +0.1 35,586 - -2.9 35,679 + +0.4 35,691 + +0.0 35,708 - +0.8 35,710 + -0.1 35,710 + +1.0 35,710 + -0.0 35,710 + +0.6 35,711 - -0.3 35,711 - +1.1 35,724 + +0.0 35,724 + -0.2 35,724 + -0.3 35,725 - -1.4 35,725 - +1.8 35,758 + -1.5 35,761 - +0.0 35,761 - -0.3 35,794 - +0.3 35,828 + -1.1 35,864 + -1.1 35,864 + +0.2 35,865 - +1.6 36,025 - EX31_RS06360 0.24 +1.1 36,025 - EX31_RS06360 0.24 -0.8 36,040 + EX31_RS06360 0.25 +1.3 36,076 + EX31_RS06360 0.29 +0.1 36,076 + EX31_RS06360 0.29 +0.7 36,076 + EX31_RS06360 0.29 +0.2 36,076 + EX31_RS06360 0.29 +1.6 36,172 + EX31_RS06360 0.39 +0.3 36,242 + EX31_RS06360 0.47 +1.2 36,317 + EX31_RS06360 0.55 -0.5 36,317 + EX31_RS06360 0.55 +0.4 36,317 + EX31_RS06360 0.55 +0.8 36,318 - EX31_RS06360 0.55 -1.1 36,318 - EX31_RS06360 0.55 +0.5 36,318 - EX31_RS06360 0.55 -0.6 36,408 + EX31_RS06360 0.64 +1.1 36,425 + EX31_RS06360 0.66 +0.1 36,425 + EX31_RS06360 0.66 -0.0 36,496 + EX31_RS06360 0.74 -0.4 36,496 + EX31_RS06360 0.74 -0.3 36,496 + EX31_RS06360 0.74 +1.1 36,497 - EX31_RS06360 0.74 +1.5 36,498 + EX31_RS06360 0.74 +0.3 36,498 + EX31_RS06360 0.74 -0.6 36,498 + EX31_RS06360 0.74 +0.3 36,498 + EX31_RS06360 0.74 +0.4 36,499 - EX31_RS06360 0.74 +0.6 36,509 + EX31_RS06360 0.75 +0.3 36,509 + EX31_RS06360 0.75 +0.3 36,587 - EX31_RS06360 0.84 -0.7 36,595 + EX31_RS06360 0.84 +0.3 36,598 + EX31_RS06360 0.85 +1.4 36,646 - EX31_RS06360 0.90 +0.6 36,752 + -0.6 36,775 - -1.5 36,787 - -0.5 36,866 - +0.6 36,933 + EX31_RS06365 0.11 -0.5 36,933 + EX31_RS06365 0.11 -0.2 36,994 - EX31_RS06365 0.18 -1.4 37,056 + EX31_RS06365 0.24 -0.1 37,104 + EX31_RS06365 0.29 -0.3 37,104 + EX31_RS06365 0.29 -0.2 37,417 + EX31_RS06365 0.61 -0.9 37,417 + EX31_RS06365 0.61 -0.3 37,417 + EX31_RS06365 0.61 -0.4 37,418 - EX31_RS06365 0.61 +0.5 37,418 - EX31_RS06365 0.61 -0.2 37,560 + EX31_RS06365 0.75 -0.2 37,621 + EX31_RS06365 0.81 +0.2 37,621 + EX31_RS06365 0.81 +1.5 37,621 + EX31_RS06365 0.81 +0.2 37,710 + -1.7
Or see this region's nucleotide sequence