Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06270 and EX31_RS06275 are separated by 82 nucleotides EX31_RS06275 and EX31_RS06280 are separated by 166 nucleotides
EX31_RS06270: EX31_RS06270 - aldo/keto reductase, at 16,777 to 17,631
_RS06270
EX31_RS06275: EX31_RS06275 - D-hexose-6-phosphate mutarotase, at 17,714 to 18,583
_RS06275
EX31_RS06280: EX31_RS06280 - glyceraldehyde-3-phosphate dehydrogenase, at 18,750 to 19,757
_RS06280
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1 at 16.714 kb on - strand at 16.722 kb on - strand at 16.754 kb on + strand at 16.755 kb on - strand at 16.843 kb on + strand at 16.843 kb on + strand at 16.843 kb on + strand at 16.844 kb on - strand at 16.844 kb on - strand at 16.844 kb on - strand at 17.094 kb on + strand, within EX31_RS06270 at 17.095 kb on - strand, within EX31_RS06270 at 17.104 kb on + strand, within EX31_RS06270 at 17.202 kb on + strand, within EX31_RS06270 at 17.279 kb on - strand, within EX31_RS06270 at 17.499 kb on + strand, within EX31_RS06270 at 17.507 kb on + strand, within EX31_RS06270 at 17.529 kb on + strand, within EX31_RS06270 at 17.571 kb on - strand at 17.577 kb on + strand at 17.577 kb on + strand at 17.578 kb on - strand at 17.578 kb on - strand at 17.706 kb on + strand at 17.719 kb on + strand at 17.765 kb on - strand at 17.776 kb on + strand at 17.815 kb on + strand, within EX31_RS06275 at 17.914 kb on + strand, within EX31_RS06275 at 17.914 kb on + strand, within EX31_RS06275 at 17.914 kb on + strand, within EX31_RS06275 at 17.915 kb on - strand, within EX31_RS06275 at 17.915 kb on - strand, within EX31_RS06275 at 17.965 kb on - strand, within EX31_RS06275 at 18.064 kb on + strand, within EX31_RS06275 at 18.065 kb on - strand, within EX31_RS06275 at 18.096 kb on + strand, within EX31_RS06275 at 18.097 kb on - strand, within EX31_RS06275 at 18.295 kb on + strand, within EX31_RS06275 at 18.296 kb on - strand, within EX31_RS06275 at 18.584 kb on + strand at 18.614 kb on - strand at 18.632 kb on + strand at 18.632 kb on + strand at 18.632 kb on + strand at 18.632 kb on + strand at 18.633 kb on - strand at 18.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 16,714 - +1.2 16,722 - +1.2 16,754 + -0.1 16,755 - +0.6 16,843 + +0.4 16,843 + -0.6 16,843 + +0.1 16,844 - +1.2 16,844 - -0.3 16,844 - +0.1 17,094 + EX31_RS06270 0.37 -0.2 17,095 - EX31_RS06270 0.37 -1.5 17,104 + EX31_RS06270 0.38 -0.2 17,202 + EX31_RS06270 0.50 +1.1 17,279 - EX31_RS06270 0.59 +1.0 17,499 + EX31_RS06270 0.84 +0.2 17,507 + EX31_RS06270 0.85 +0.2 17,529 + EX31_RS06270 0.88 -0.1 17,571 - -0.1 17,577 + +0.1 17,577 + -2.0 17,578 - +0.7 17,578 - -2.1 17,706 + +1.2 17,719 + +0.3 17,765 - -0.4 17,776 + -2.2 17,815 + EX31_RS06275 0.12 -0.4 17,914 + EX31_RS06275 0.23 +0.5 17,914 + EX31_RS06275 0.23 -0.3 17,914 + EX31_RS06275 0.23 -2.3 17,915 - EX31_RS06275 0.23 +1.1 17,915 - EX31_RS06275 0.23 +1.2 17,965 - EX31_RS06275 0.29 -0.0 18,064 + EX31_RS06275 0.40 +1.1 18,065 - EX31_RS06275 0.40 +0.8 18,096 + EX31_RS06275 0.44 +0.2 18,097 - EX31_RS06275 0.44 +0.7 18,295 + EX31_RS06275 0.67 -2.4 18,296 - EX31_RS06275 0.67 +0.8 18,584 + +0.0 18,614 - -2.1 18,632 + +0.3 18,632 + +0.9 18,632 + -1.2 18,632 + +0.4 18,633 - -0.3 18,744 - -0.2
Or see this region's nucleotide sequence