Strain Fitness in Rahnella sp. WP5 around EX31_RS05855

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS05850 and EX31_RS05855 are separated by 284 nucleotidesEX31_RS05855 and EX31_RS05860 are separated by 7 nucleotides EX31_RS05850: EX31_RS05850 - DUF3053 domain-containing protein, at 324,675 to 325,397 _RS05850 EX31_RS05855: EX31_RS05855 - glycine--tRNA ligase subunit beta, at 325,682 to 327,751 _RS05855 EX31_RS05860: EX31_RS05860 - glycine--tRNA ligase subunit alpha, at 327,759 to 328,694 _RS05860 Position (kb) 325 326 327 328Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 324.683 kb on + strandat 324.683 kb on + strandat 324.683 kb on + strandat 324.683 kb on + strandat 324.683 kb on + strandat 324.684 kb on - strandat 324.684 kb on - strandat 324.684 kb on - strandat 324.760 kb on + strand, within EX31_RS05850at 324.760 kb on + strand, within EX31_RS05850at 324.760 kb on + strand, within EX31_RS05850at 324.760 kb on + strand, within EX31_RS05850at 324.760 kb on + strand, within EX31_RS05850at 324.761 kb on - strand, within EX31_RS05850at 324.761 kb on - strand, within EX31_RS05850at 324.761 kb on - strand, within EX31_RS05850at 324.761 kb on - strand, within EX31_RS05850at 324.761 kb on - strand, within EX31_RS05850at 324.761 kb on - strand, within EX31_RS05850at 324.761 kb on - strand, within EX31_RS05850at 324.761 kb on - strand, within EX31_RS05850at 324.931 kb on + strand, within EX31_RS05850at 324.931 kb on + strand, within EX31_RS05850at 324.931 kb on + strand, within EX31_RS05850at 324.931 kb on + strand, within EX31_RS05850at 324.931 kb on + strand, within EX31_RS05850at 324.931 kb on + strand, within EX31_RS05850at 324.931 kb on + strand, within EX31_RS05850at 324.931 kb on + strand, within EX31_RS05850at 324.931 kb on + strand, within EX31_RS05850at 324.931 kb on + strand, within EX31_RS05850at 324.931 kb on + strand, within EX31_RS05850at 324.932 kb on - strand, within EX31_RS05850at 324.932 kb on - strand, within EX31_RS05850at 324.932 kb on - strand, within EX31_RS05850at 324.932 kb on - strand, within EX31_RS05850at 324.932 kb on - strand, within EX31_RS05850at 324.932 kb on - strand, within EX31_RS05850at 324.932 kb on - strand, within EX31_RS05850at 324.932 kb on - strand, within EX31_RS05850at 324.932 kb on - strand, within EX31_RS05850at 324.932 kb on - strand, within EX31_RS05850at 324.932 kb on - strand, within EX31_RS05850at 324.932 kb on - strand, within EX31_RS05850at 324.932 kb on - strand, within EX31_RS05850at 324.932 kb on - strand, within EX31_RS05850at 324.933 kb on + strand, within EX31_RS05850at 324.933 kb on + strand, within EX31_RS05850at 324.933 kb on + strand, within EX31_RS05850at 324.933 kb on + strand, within EX31_RS05850at 324.934 kb on - strand, within EX31_RS05850at 324.934 kb on - strand, within EX31_RS05850at 324.934 kb on - strand, within EX31_RS05850at 324.934 kb on - strand, within EX31_RS05850at 324.941 kb on + strand, within EX31_RS05850at 324.942 kb on - strand, within EX31_RS05850at 324.944 kb on - strand, within EX31_RS05850at 325.078 kb on + strand, within EX31_RS05850at 325.078 kb on + strand, within EX31_RS05850at 325.078 kb on + strand, within EX31_RS05850at 325.078 kb on + strand, within EX31_RS05850at 325.078 kb on + strand, within EX31_RS05850at 325.078 kb on + strand, within EX31_RS05850at 325.078 kb on + strand, within EX31_RS05850at 325.078 kb on + strand, within EX31_RS05850at 325.079 kb on - strand, within EX31_RS05850at 325.079 kb on - strand, within EX31_RS05850at 325.079 kb on - strand, within EX31_RS05850at 325.079 kb on - strand, within EX31_RS05850at 325.079 kb on - strand, within EX31_RS05850at 325.091 kb on + strand, within EX31_RS05850at 325.131 kb on - strand, within EX31_RS05850at 325.180 kb on + strand, within EX31_RS05850at 325.180 kb on + strand, within EX31_RS05850at 325.197 kb on - strand, within EX31_RS05850at 325.247 kb on + strand, within EX31_RS05850at 325.248 kb on - strand, within EX31_RS05850at 325.259 kb on + strand, within EX31_RS05850at 325.259 kb on + strand, within EX31_RS05850at 325.260 kb on - strand, within EX31_RS05850at 325.270 kb on + strand, within EX31_RS05850at 325.389 kb on + strandat 325.389 kb on + strandat 325.390 kb on - strandat 325.472 kb on + strandat 325.472 kb on + strandat 325.472 kb on + strandat 325.472 kb on + strandat 325.472 kb on + strandat 325.473 kb on - strandat 325.473 kb on - strandat 325.473 kb on - strandat 325.473 kb on - strandat 325.473 kb on - strandat 325.473 kb on - strandat 325.473 kb on - strandat 325.473 kb on - strandat 325.473 kb on - strandat 325.477 kb on + strandat 325.477 kb on + strandat 325.477 kb on + strandat 325.478 kb on - strandat 325.478 kb on - strandat 325.478 kb on - strandat 325.478 kb on - strandat 325.514 kb on + strandat 325.515 kb on - strandat 325.578 kb on + strandat 325.578 kb on + strandat 325.581 kb on + strandat 325.581 kb on + strandat 325.606 kb on + strandat 325.607 kb on - strandat 325.631 kb on - strandat 325.631 kb on - strandat 325.634 kb on - strandat 325.634 kb on - strandat 325.634 kb on - strandat 326.116 kb on + strand, within EX31_RS05855at 328.724 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
remove
324,683 + -0.3
324,683 + -0.6
324,683 + +0.8
324,683 + -0.3
324,683 + -0.1
324,684 - +0.2
324,684 - -1.2
324,684 - +0.9
324,760 + EX31_RS05850 0.12 +0.5
324,760 + EX31_RS05850 0.12 +0.5
324,760 + EX31_RS05850 0.12 +0.6
324,760 + EX31_RS05850 0.12 +0.7
324,760 + EX31_RS05850 0.12 +0.1
324,761 - EX31_RS05850 0.12 -0.7
324,761 - EX31_RS05850 0.12 +0.6
324,761 - EX31_RS05850 0.12 -0.6
324,761 - EX31_RS05850 0.12 -0.1
324,761 - EX31_RS05850 0.12 -0.7
324,761 - EX31_RS05850 0.12 -1.0
324,761 - EX31_RS05850 0.12 -0.1
324,761 - EX31_RS05850 0.12 +0.2
324,931 + EX31_RS05850 0.35 -0.2
324,931 + EX31_RS05850 0.35 +0.0
324,931 + EX31_RS05850 0.35 +0.4
324,931 + EX31_RS05850 0.35 +0.1
324,931 + EX31_RS05850 0.35 -0.1
324,931 + EX31_RS05850 0.35 -1.1
324,931 + EX31_RS05850 0.35 +0.2
324,931 + EX31_RS05850 0.35 -0.4
324,931 + EX31_RS05850 0.35 +0.6
324,931 + EX31_RS05850 0.35 +0.1
324,931 + EX31_RS05850 0.35 +0.0
324,932 - EX31_RS05850 0.36 +0.2
324,932 - EX31_RS05850 0.36 -0.4
324,932 - EX31_RS05850 0.36 +0.6
324,932 - EX31_RS05850 0.36 -0.1
324,932 - EX31_RS05850 0.36 -0.5
324,932 - EX31_RS05850 0.36 -0.9
324,932 - EX31_RS05850 0.36 -2.8
324,932 - EX31_RS05850 0.36 +0.0
324,932 - EX31_RS05850 0.36 -0.9
324,932 - EX31_RS05850 0.36 -0.7
324,932 - EX31_RS05850 0.36 +2.0
324,932 - EX31_RS05850 0.36 -0.2
324,932 - EX31_RS05850 0.36 -0.7
324,932 - EX31_RS05850 0.36 -1.1
324,933 + EX31_RS05850 0.36 -0.0
324,933 + EX31_RS05850 0.36 +0.0
324,933 + EX31_RS05850 0.36 +0.5
324,933 + EX31_RS05850 0.36 -0.5
324,934 - EX31_RS05850 0.36 +0.3
324,934 - EX31_RS05850 0.36 +0.1
324,934 - EX31_RS05850 0.36 -0.5
324,934 - EX31_RS05850 0.36 -0.2
324,941 + EX31_RS05850 0.37 -0.2
324,942 - EX31_RS05850 0.37 -0.3
324,944 - EX31_RS05850 0.37 +1.0
325,078 + EX31_RS05850 0.56 +0.9
325,078 + EX31_RS05850 0.56 -1.0
325,078 + EX31_RS05850 0.56 +0.2
325,078 + EX31_RS05850 0.56 +0.2
325,078 + EX31_RS05850 0.56 -0.6
325,078 + EX31_RS05850 0.56 -0.6
325,078 + EX31_RS05850 0.56 +0.3
325,078 + EX31_RS05850 0.56 -0.0
325,079 - EX31_RS05850 0.56 -0.4
325,079 - EX31_RS05850 0.56 -0.2
325,079 - EX31_RS05850 0.56 -0.1
325,079 - EX31_RS05850 0.56 -0.7
325,079 - EX31_RS05850 0.56 -0.0
325,091 + EX31_RS05850 0.58 -1.0
325,131 - EX31_RS05850 0.63 -0.3
325,180 + EX31_RS05850 0.70 -0.0
325,180 + EX31_RS05850 0.70 +0.6
325,197 - EX31_RS05850 0.72 -0.5
325,247 + EX31_RS05850 0.79 +1.3
325,248 - EX31_RS05850 0.79 -0.1
325,259 + EX31_RS05850 0.81 +0.3
325,259 + EX31_RS05850 0.81 +0.8
325,260 - EX31_RS05850 0.81 -2.2
325,270 + EX31_RS05850 0.82 -0.1
325,389 + -0.6
325,389 + -0.6
325,390 - -0.4
325,472 + -0.6
325,472 + -0.6
325,472 + -0.0
325,472 + -0.3
325,472 + -0.2
325,473 - -0.1
325,473 - -0.1
325,473 - +0.6
325,473 - +0.5
325,473 - -0.2
325,473 - -0.7
325,473 - -0.2
325,473 - -0.1
325,473 - +0.3
325,477 + -1.6
325,477 + -0.8
325,477 + -0.2
325,478 - -0.8
325,478 - +0.4
325,478 - -0.1
325,478 - -0.9
325,514 + -1.0
325,515 - +0.1
325,578 + -0.5
325,578 + -0.3
325,581 + +0.7
325,581 + -0.3
325,606 + +0.8
325,607 - +0.3
325,631 - +0.0
325,631 - +0.2
325,634 - +0.2
325,634 - +1.9
325,634 - +0.1
326,116 + EX31_RS05855 0.21 +1.0
328,724 - -0.6

Or see this region's nucleotide sequence