Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05750 and EX31_RS05755 are separated by 101 nucleotides EX31_RS05755 and EX31_RS05760 are separated by 85 nucleotides EX31_RS05760 and EX31_RS05765 overlap by 4 nucleotides
EX31_RS05750: EX31_RS05750 - aldehyde dehydrogenase, at 301,216 to 302,754
_RS05750
EX31_RS05755: EX31_RS05755 - glutathione S-transferase, at 302,856 to 303,497
_RS05755
EX31_RS05760: EX31_RS05760 - formate dehydrogenase accessory protein FdhE, at 303,583 to 304,488
_RS05760
EX31_RS05765: EX31_RS05765 - formate dehydrogenase cytochrome b556 subunit, at 304,485 to 305,138
_RS05765
Position (kb) 302
303
304 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 301.929 kb on + strand, within EX31_RS05750 at 301.929 kb on + strand, within EX31_RS05750 at 301.930 kb on - strand, within EX31_RS05750 at 301.985 kb on + strand, within EX31_RS05750 at 301.985 kb on + strand, within EX31_RS05750 at 302.040 kb on + strand, within EX31_RS05750 at 302.060 kb on + strand, within EX31_RS05750 at 302.061 kb on - strand, within EX31_RS05750 at 302.061 kb on - strand, within EX31_RS05750 at 302.097 kb on + strand, within EX31_RS05750 at 302.097 kb on + strand, within EX31_RS05750 at 302.179 kb on + strand, within EX31_RS05750 at 302.190 kb on + strand, within EX31_RS05750 at 302.191 kb on - strand, within EX31_RS05750 at 302.191 kb on - strand, within EX31_RS05750 at 302.191 kb on - strand, within EX31_RS05750 at 302.592 kb on + strand, within EX31_RS05750 at 302.592 kb on + strand, within EX31_RS05750 at 302.592 kb on + strand, within EX31_RS05750 at 302.630 kb on + strand at 302.630 kb on + strand at 302.630 kb on + strand at 302.631 kb on - strand at 302.631 kb on - strand at 302.631 kb on - strand at 302.631 kb on - strand at 302.631 kb on - strand at 302.631 kb on - strand at 302.633 kb on + strand at 302.633 kb on + strand at 302.634 kb on - strand at 302.670 kb on + strand at 302.671 kb on - strand at 302.681 kb on + strand at 302.681 kb on + strand at 302.711 kb on + strand at 302.712 kb on - strand at 302.743 kb on - strand at 302.743 kb on - strand at 302.747 kb on + strand at 302.748 kb on - strand at 302.748 kb on - strand at 302.748 kb on - strand at 302.748 kb on - strand at 302.748 kb on - strand at 302.768 kb on + strand at 302.768 kb on + strand at 302.769 kb on - strand at 302.769 kb on - strand at 302.782 kb on + strand at 302.804 kb on + strand at 302.804 kb on + strand at 302.804 kb on + strand at 302.804 kb on + strand at 302.805 kb on - strand at 302.834 kb on - strand at 302.834 kb on - strand at 302.987 kb on + strand, within EX31_RS05755 at 303.005 kb on - strand, within EX31_RS05755 at 303.030 kb on - strand, within EX31_RS05755 at 303.143 kb on + strand, within EX31_RS05755 at 303.144 kb on - strand, within EX31_RS05755 at 303.234 kb on + strand, within EX31_RS05755 at 303.235 kb on - strand, within EX31_RS05755 at 303.235 kb on - strand, within EX31_RS05755 at 303.370 kb on + strand, within EX31_RS05755 at 303.370 kb on + strand, within EX31_RS05755 at 303.371 kb on - strand, within EX31_RS05755 at 303.371 kb on - strand, within EX31_RS05755 at 303.371 kb on - strand, within EX31_RS05755 at 303.462 kb on + strand at 303.462 kb on + strand at 303.463 kb on - strand at 303.466 kb on + strand at 303.466 kb on + strand at 303.466 kb on + strand at 303.466 kb on + strand at 303.467 kb on - strand at 303.467 kb on - strand at 303.467 kb on - strand at 303.467 kb on - strand at 303.467 kb on - strand at 303.476 kb on + strand at 303.476 kb on + strand at 303.476 kb on + strand at 303.477 kb on - strand at 303.477 kb on - strand at 303.478 kb on + strand at 303.478 kb on + strand at 303.478 kb on + strand at 303.478 kb on + strand at 303.478 kb on + strand at 303.478 kb on + strand at 303.479 kb on - strand at 303.479 kb on - strand at 303.479 kb on - strand at 303.479 kb on - strand at 303.479 kb on - strand at 303.531 kb on - strand at 303.531 kb on - strand at 303.531 kb on - strand at 303.536 kb on + strand at 303.536 kb on + strand at 303.536 kb on + strand at 303.537 kb on - strand at 303.537 kb on - strand at 303.555 kb on + strand at 303.555 kb on + strand at 303.577 kb on + strand at 303.612 kb on + strand at 303.702 kb on + strand, within EX31_RS05760 at 303.710 kb on + strand, within EX31_RS05760 at 303.711 kb on - strand, within EX31_RS05760 at 303.912 kb on + strand, within EX31_RS05760 at 303.912 kb on + strand, within EX31_RS05760 at 303.913 kb on - strand, within EX31_RS05760 at 303.913 kb on - strand, within EX31_RS05760 at 303.913 kb on - strand, within EX31_RS05760 at 304.123 kb on + strand, within EX31_RS05760 at 304.124 kb on - strand, within EX31_RS05760 at 304.124 kb on - strand, within EX31_RS05760 at 304.391 kb on + strand, within EX31_RS05760 at 304.392 kb on - strand, within EX31_RS05760 at 304.392 kb on - strand, within EX31_RS05760 at 304.446 kb on + strand at 304.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 301,929 + EX31_RS05750 0.46 -0.2 301,929 + EX31_RS05750 0.46 -2.0 301,930 - EX31_RS05750 0.46 +0.7 301,985 + EX31_RS05750 0.50 -0.0 301,985 + EX31_RS05750 0.50 -0.2 302,040 + EX31_RS05750 0.54 -0.1 302,060 + EX31_RS05750 0.55 -0.8 302,061 - EX31_RS05750 0.55 -2.2 302,061 - EX31_RS05750 0.55 +1.0 302,097 + EX31_RS05750 0.57 -0.5 302,097 + EX31_RS05750 0.57 -0.1 302,179 + EX31_RS05750 0.63 -0.7 302,190 + EX31_RS05750 0.63 -0.1 302,191 - EX31_RS05750 0.63 +0.0 302,191 - EX31_RS05750 0.63 -0.3 302,191 - EX31_RS05750 0.63 -0.5 302,592 + EX31_RS05750 0.89 -3.1 302,592 + EX31_RS05750 0.89 -0.0 302,592 + EX31_RS05750 0.89 -1.0 302,630 + -0.2 302,630 + -0.1 302,630 + -0.4 302,631 - -1.1 302,631 - -0.2 302,631 - +0.1 302,631 - -3.3 302,631 - -2.4 302,631 - +0.3 302,633 + -0.9 302,633 + +0.0 302,634 - +0.3 302,670 + +0.2 302,671 - +0.1 302,681 + +0.3 302,681 + +1.3 302,711 + -1.0 302,712 - +0.6 302,743 - +1.0 302,743 - +0.7 302,747 + -0.8 302,748 - +0.2 302,748 - -0.1 302,748 - -0.4 302,748 - -1.0 302,748 - +0.3 302,768 + +0.2 302,768 + +0.4 302,769 - -2.2 302,769 - +0.2 302,782 + -1.0 302,804 + -0.2 302,804 + +0.3 302,804 + -0.3 302,804 + +0.0 302,805 - +0.0 302,834 - +0.4 302,834 - +0.2 302,987 + EX31_RS05755 0.20 +0.3 303,005 - EX31_RS05755 0.23 +0.3 303,030 - EX31_RS05755 0.27 +0.1 303,143 + EX31_RS05755 0.45 -0.5 303,144 - EX31_RS05755 0.45 +0.2 303,234 + EX31_RS05755 0.59 +0.8 303,235 - EX31_RS05755 0.59 +1.9 303,235 - EX31_RS05755 0.59 -0.3 303,370 + EX31_RS05755 0.80 +0.7 303,370 + EX31_RS05755 0.80 +0.1 303,371 - EX31_RS05755 0.80 +0.3 303,371 - EX31_RS05755 0.80 +1.0 303,371 - EX31_RS05755 0.80 +0.7 303,462 + -0.4 303,462 + -0.3 303,463 - +0.8 303,466 + -0.9 303,466 + +1.2 303,466 + -2.1 303,466 + -0.6 303,467 - -0.3 303,467 - -1.1 303,467 - +0.1 303,467 - -0.7 303,467 - -0.7 303,476 + -0.2 303,476 + +0.8 303,476 + +0.1 303,477 - -1.2 303,477 - +0.0 303,478 + -0.7 303,478 + +1.0 303,478 + +0.6 303,478 + +0.1 303,478 + -1.3 303,478 + -0.2 303,479 - -2.7 303,479 - +0.6 303,479 - -0.4 303,479 - +0.1 303,479 - +1.0 303,531 - -0.4 303,531 - +0.3 303,531 - +1.0 303,536 + +0.0 303,536 + -1.4 303,536 + -0.9 303,537 - +0.3 303,537 - +0.1 303,555 + -2.4 303,555 + +0.4 303,577 + +0.1 303,612 + +0.5 303,702 + EX31_RS05760 0.13 +0.1 303,710 + EX31_RS05760 0.14 -1.2 303,711 - EX31_RS05760 0.14 +0.6 303,912 + EX31_RS05760 0.36 -1.0 303,912 + EX31_RS05760 0.36 +0.2 303,913 - EX31_RS05760 0.36 +0.4 303,913 - EX31_RS05760 0.36 +0.1 303,913 - EX31_RS05760 0.36 -1.4 304,123 + EX31_RS05760 0.60 +0.2 304,124 - EX31_RS05760 0.60 +0.5 304,124 - EX31_RS05760 0.60 -0.7 304,391 + EX31_RS05760 0.89 -1.6 304,392 - EX31_RS05760 0.89 -0.8 304,392 - EX31_RS05760 0.89 -1.4 304,446 + -0.5 304,447 - +1.7
Or see this region's nucleotide sequence