Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05650 and EX31_RS05655 are separated by 63 nucleotides EX31_RS05655 and EX31_RS05660 are separated by 403 nucleotides EX31_RS05660 and EX31_RS05665 are separated by 158 nucleotides EX31_RS05665 and EX31_RS05670 are separated by 19 nucleotides
EX31_RS05650: EX31_RS05650 - hypothetical protein, at 286,612 to 286,995
_RS05650
EX31_RS05655: EX31_RS05655 - GlsB/YeaQ/YmgE family stress response membrane protein, at 287,059 to 287,307
_RS05655
EX31_RS05660: EX31_RS05660 - DUF1471 domain-containing protein, at 287,711 to 287,968
_RS05660
EX31_RS05665: EX31_RS05665 - LysE family translocator, at 288,127 to 288,762
_RS05665
EX31_RS05670: EX31_RS05670 - GNAT family N-acetyltransferase, at 288,782 to 289,228
_RS05670
Position (kb) 287
288 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 286.759 kb on + strand, within EX31_RS05650 at 286.759 kb on + strand, within EX31_RS05650 at 286.759 kb on + strand, within EX31_RS05650 at 286.759 kb on + strand, within EX31_RS05650 at 286.759 kb on + strand, within EX31_RS05650 at 286.759 kb on + strand, within EX31_RS05650 at 286.759 kb on + strand, within EX31_RS05650 at 286.759 kb on + strand, within EX31_RS05650 at 286.759 kb on + strand, within EX31_RS05650 at 286.759 kb on + strand, within EX31_RS05650 at 286.759 kb on + strand, within EX31_RS05650 at 286.759 kb on + strand, within EX31_RS05650 at 286.760 kb on - strand, within EX31_RS05650 at 286.760 kb on - strand, within EX31_RS05650 at 286.760 kb on - strand, within EX31_RS05650 at 286.760 kb on - strand, within EX31_RS05650 at 286.760 kb on - strand, within EX31_RS05650 at 286.760 kb on - strand, within EX31_RS05650 at 286.774 kb on + strand, within EX31_RS05650 at 286.777 kb on - strand, within EX31_RS05650 at 286.777 kb on - strand, within EX31_RS05650 at 286.777 kb on - strand, within EX31_RS05650 at 286.791 kb on + strand, within EX31_RS05650 at 286.791 kb on + strand, within EX31_RS05650 at 286.792 kb on - strand, within EX31_RS05650 at 286.828 kb on + strand, within EX31_RS05650 at 286.829 kb on - strand, within EX31_RS05650 at 286.837 kb on + strand, within EX31_RS05650 at 286.837 kb on + strand, within EX31_RS05650 at 286.837 kb on + strand, within EX31_RS05650 at 286.837 kb on + strand, within EX31_RS05650 at 286.838 kb on - strand, within EX31_RS05650 at 286.838 kb on - strand, within EX31_RS05650 at 286.838 kb on - strand, within EX31_RS05650 at 286.838 kb on - strand, within EX31_RS05650 at 286.838 kb on - strand, within EX31_RS05650 at 286.839 kb on + strand, within EX31_RS05650 at 286.839 kb on + strand, within EX31_RS05650 at 286.839 kb on + strand, within EX31_RS05650 at 286.839 kb on + strand, within EX31_RS05650 at 286.839 kb on + strand, within EX31_RS05650 at 286.839 kb on + strand, within EX31_RS05650 at 286.839 kb on + strand, within EX31_RS05650 at 286.839 kb on + strand, within EX31_RS05650 at 286.839 kb on + strand, within EX31_RS05650 at 286.839 kb on + strand, within EX31_RS05650 at 286.839 kb on + strand, within EX31_RS05650 at 286.840 kb on - strand, within EX31_RS05650 at 286.840 kb on - strand, within EX31_RS05650 at 286.840 kb on - strand, within EX31_RS05650 at 286.840 kb on - strand, within EX31_RS05650 at 286.840 kb on - strand, within EX31_RS05650 at 286.840 kb on - strand, within EX31_RS05650 at 286.849 kb on + strand, within EX31_RS05650 at 286.849 kb on + strand, within EX31_RS05650 at 286.850 kb on - strand, within EX31_RS05650 at 286.850 kb on - strand, within EX31_RS05650 at 286.850 kb on - strand, within EX31_RS05650 at 286.850 kb on - strand, within EX31_RS05650 at 286.850 kb on - strand, within EX31_RS05650 at 286.850 kb on - strand, within EX31_RS05650 at 286.882 kb on + strand, within EX31_RS05650 at 286.882 kb on + strand, within EX31_RS05650 at 286.883 kb on - strand, within EX31_RS05650 at 286.883 kb on - strand, within EX31_RS05650 at 286.883 kb on - strand, within EX31_RS05650 at 286.937 kb on - strand, within EX31_RS05650 at 286.967 kb on + strand at 286.967 kb on + strand at 286.968 kb on - strand at 286.968 kb on - strand at 286.998 kb on - strand at 287.046 kb on + strand at 287.060 kb on + strand at 287.060 kb on + strand at 287.060 kb on + strand at 287.060 kb on + strand at 287.061 kb on - strand at 287.061 kb on - strand at 287.061 kb on - strand at 287.073 kb on + strand at 287.073 kb on + strand at 287.073 kb on + strand at 287.073 kb on + strand at 287.073 kb on + strand at 287.074 kb on - strand at 287.082 kb on + strand at 287.083 kb on - strand at 287.090 kb on - strand, within EX31_RS05655 at 287.167 kb on - strand, within EX31_RS05655 at 287.172 kb on + strand, within EX31_RS05655 at 287.172 kb on + strand, within EX31_RS05655 at 287.172 kb on + strand, within EX31_RS05655 at 287.172 kb on + strand, within EX31_RS05655 at 287.172 kb on + strand, within EX31_RS05655 at 287.172 kb on + strand, within EX31_RS05655 at 287.172 kb on + strand, within EX31_RS05655 at 287.172 kb on + strand, within EX31_RS05655 at 287.173 kb on - strand, within EX31_RS05655 at 287.173 kb on - strand, within EX31_RS05655 at 287.173 kb on - strand, within EX31_RS05655 at 287.173 kb on - strand, within EX31_RS05655 at 287.173 kb on - strand, within EX31_RS05655 at 287.174 kb on + strand, within EX31_RS05655 at 287.174 kb on + strand, within EX31_RS05655 at 287.174 kb on + strand, within EX31_RS05655 at 287.174 kb on + strand, within EX31_RS05655 at 287.174 kb on + strand, within EX31_RS05655 at 287.174 kb on + strand, within EX31_RS05655 at 287.174 kb on + strand, within EX31_RS05655 at 287.174 kb on + strand, within EX31_RS05655 at 287.174 kb on + strand, within EX31_RS05655 at 287.174 kb on + strand, within EX31_RS05655 at 287.174 kb on + strand, within EX31_RS05655 at 287.175 kb on - strand, within EX31_RS05655 at 287.175 kb on - strand, within EX31_RS05655 at 287.175 kb on - strand, within EX31_RS05655 at 287.175 kb on - strand, within EX31_RS05655 at 287.175 kb on - strand, within EX31_RS05655 at 287.175 kb on - strand, within EX31_RS05655 at 287.194 kb on + strand, within EX31_RS05655 at 287.194 kb on + strand, within EX31_RS05655 at 287.194 kb on + strand, within EX31_RS05655 at 287.195 kb on - strand, within EX31_RS05655 at 287.195 kb on - strand, within EX31_RS05655 at 287.195 kb on - strand, within EX31_RS05655 at 287.195 kb on - strand, within EX31_RS05655 at 287.195 kb on - strand, within EX31_RS05655 at 287.209 kb on + strand, within EX31_RS05655 at 287.210 kb on - strand, within EX31_RS05655 at 287.210 kb on - strand, within EX31_RS05655 at 287.265 kb on + strand, within EX31_RS05655 at 287.265 kb on + strand, within EX31_RS05655 at 287.265 kb on + strand, within EX31_RS05655 at 287.266 kb on - strand, within EX31_RS05655 at 287.266 kb on - strand, within EX31_RS05655 at 287.266 kb on - strand, within EX31_RS05655 at 287.287 kb on - strand at 287.345 kb on - strand at 287.360 kb on + strand at 287.442 kb on - strand at 287.442 kb on - strand at 287.448 kb on + strand at 287.509 kb on - strand at 287.553 kb on + strand at 287.649 kb on + strand at 287.649 kb on + strand at 287.650 kb on - strand at 287.650 kb on - strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.653 kb on - strand at 287.653 kb on - strand at 287.653 kb on - strand at 287.653 kb on - strand at 287.654 kb on + strand at 287.788 kb on + strand, within EX31_RS05660 at 287.789 kb on - strand, within EX31_RS05660 at 287.960 kb on + strand at 287.961 kb on - strand at 287.966 kb on + strand at 287.966 kb on + strand at 287.967 kb on - strand at 287.967 kb on - strand at 288.094 kb on + strand at 288.095 kb on - strand at 288.095 kb on - strand at 288.176 kb on + strand at 288.238 kb on - strand, within EX31_RS05665 at 288.238 kb on - strand, within EX31_RS05665 at 288.299 kb on + strand, within EX31_RS05665 at 288.300 kb on - strand, within EX31_RS05665 at 288.373 kb on + strand, within EX31_RS05665 at 288.507 kb on + strand, within EX31_RS05665 at 288.508 kb on - strand, within EX31_RS05665 at 288.529 kb on + strand, within EX31_RS05665 at 288.529 kb on + strand, within EX31_RS05665 at 288.529 kb on + strand, within EX31_RS05665 at 288.529 kb on + strand, within EX31_RS05665 at 288.529 kb on + strand, within EX31_RS05665 at 288.530 kb on - strand, within EX31_RS05665 at 288.530 kb on - strand, within EX31_RS05665 at 288.530 kb on - strand, within EX31_RS05665 at 288.530 kb on - strand, within EX31_RS05665 at 288.530 kb on - strand, within EX31_RS05665 at 288.530 kb on - strand, within EX31_RS05665 at 288.530 kb on - strand, within EX31_RS05665 at 288.530 kb on - strand, within EX31_RS05665 at 288.530 kb on - strand, within EX31_RS05665 at 288.530 kb on - strand, within EX31_RS05665 at 288.580 kb on + strand, within EX31_RS05665 at 288.580 kb on + strand, within EX31_RS05665 at 288.580 kb on + strand, within EX31_RS05665 at 288.866 kb on - strand, within EX31_RS05670 at 288.891 kb on + strand, within EX31_RS05670 at 288.892 kb on - strand, within EX31_RS05670 at 288.892 kb on - strand, within EX31_RS05670 at 288.892 kb on - strand, within EX31_RS05670 at 288.965 kb on + strand, within EX31_RS05670 at 288.965 kb on + strand, within EX31_RS05670 at 288.965 kb on + strand, within EX31_RS05670 at 288.965 kb on + strand, within EX31_RS05670 at 288.965 kb on + strand, within EX31_RS05670 at 288.965 kb on + strand, within EX31_RS05670 at 288.965 kb on + strand, within EX31_RS05670 at 288.965 kb on + strand, within EX31_RS05670 at 288.965 kb on + strand, within EX31_RS05670 at 288.965 kb on + strand, within EX31_RS05670 at 288.965 kb on + strand, within EX31_RS05670 at 288.965 kb on + strand, within EX31_RS05670 at 288.965 kb on + strand, within EX31_RS05670 at 288.965 kb on + strand, within EX31_RS05670 at 288.965 kb on + strand, within EX31_RS05670 at 288.966 kb on - strand, within EX31_RS05670 at 288.966 kb on - strand, within EX31_RS05670 at 288.966 kb on - strand, within EX31_RS05670 at 288.966 kb on - strand, within EX31_RS05670 at 288.966 kb on - strand, within EX31_RS05670 at 288.966 kb on - strand, within EX31_RS05670 at 288.966 kb on - strand, within EX31_RS05670 at 288.966 kb on - strand, within EX31_RS05670 at 288.966 kb on - strand, within EX31_RS05670 at 288.966 kb on - strand, within EX31_RS05670 at 288.966 kb on - strand, within EX31_RS05670 at 288.966 kb on - strand, within EX31_RS05670 at 288.966 kb on - strand, within EX31_RS05670 at 288.966 kb on - strand, within EX31_RS05670
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 286,759 + EX31_RS05650 0.38 -0.8 286,759 + EX31_RS05650 0.38 -0.3 286,759 + EX31_RS05650 0.38 +0.1 286,759 + EX31_RS05650 0.38 +0.3 286,759 + EX31_RS05650 0.38 -0.7 286,759 + EX31_RS05650 0.38 +0.3 286,759 + EX31_RS05650 0.38 +0.2 286,759 + EX31_RS05650 0.38 +0.3 286,759 + EX31_RS05650 0.38 -0.0 286,759 + EX31_RS05650 0.38 +0.2 286,759 + EX31_RS05650 0.38 -0.0 286,759 + EX31_RS05650 0.38 +0.0 286,760 - EX31_RS05650 0.39 +0.2 286,760 - EX31_RS05650 0.39 +0.4 286,760 - EX31_RS05650 0.39 -0.3 286,760 - EX31_RS05650 0.39 +0.5 286,760 - EX31_RS05650 0.39 -3.0 286,760 - EX31_RS05650 0.39 -1.0 286,774 + EX31_RS05650 0.42 -0.8 286,777 - EX31_RS05650 0.43 +0.8 286,777 - EX31_RS05650 0.43 -0.0 286,777 - EX31_RS05650 0.43 -0.3 286,791 + EX31_RS05650 0.47 -0.3 286,791 + EX31_RS05650 0.47 +0.5 286,792 - EX31_RS05650 0.47 -2.3 286,828 + EX31_RS05650 0.56 +0.1 286,829 - EX31_RS05650 0.57 -1.4 286,837 + EX31_RS05650 0.59 -2.4 286,837 + EX31_RS05650 0.59 -0.1 286,837 + EX31_RS05650 0.59 -0.7 286,837 + EX31_RS05650 0.59 +0.0 286,838 - EX31_RS05650 0.59 -0.6 286,838 - EX31_RS05650 0.59 +0.2 286,838 - EX31_RS05650 0.59 +0.1 286,838 - EX31_RS05650 0.59 -0.1 286,838 - EX31_RS05650 0.59 +0.3 286,839 + EX31_RS05650 0.59 -0.2 286,839 + EX31_RS05650 0.59 +0.1 286,839 + EX31_RS05650 0.59 -0.8 286,839 + EX31_RS05650 0.59 +0.2 286,839 + EX31_RS05650 0.59 -2.6 286,839 + EX31_RS05650 0.59 -0.2 286,839 + EX31_RS05650 0.59 -0.8 286,839 + EX31_RS05650 0.59 +0.4 286,839 + EX31_RS05650 0.59 +0.5 286,839 + EX31_RS05650 0.59 +0.1 286,839 + EX31_RS05650 0.59 -2.7 286,840 - EX31_RS05650 0.59 +0.4 286,840 - EX31_RS05650 0.59 -0.4 286,840 - EX31_RS05650 0.59 -1.8 286,840 - EX31_RS05650 0.59 +0.6 286,840 - EX31_RS05650 0.59 -0.9 286,840 - EX31_RS05650 0.59 +0.1 286,849 + EX31_RS05650 0.62 -1.7 286,849 + EX31_RS05650 0.62 -0.2 286,850 - EX31_RS05650 0.62 +0.8 286,850 - EX31_RS05650 0.62 -0.1 286,850 - EX31_RS05650 0.62 +0.5 286,850 - EX31_RS05650 0.62 -0.1 286,850 - EX31_RS05650 0.62 +0.1 286,850 - EX31_RS05650 0.62 -0.2 286,882 + EX31_RS05650 0.70 -0.4 286,882 + EX31_RS05650 0.70 -0.3 286,883 - EX31_RS05650 0.71 +0.4 286,883 - EX31_RS05650 0.71 +0.2 286,883 - EX31_RS05650 0.71 +0.6 286,937 - EX31_RS05650 0.85 +0.5 286,967 + -0.5 286,967 + -0.4 286,968 - +0.4 286,968 - -0.4 286,998 - +0.5 287,046 + +0.4 287,060 + +0.5 287,060 + +0.4 287,060 + +0.3 287,060 + +0.4 287,061 - -0.0 287,061 - -0.8 287,061 - -0.0 287,073 + +0.8 287,073 + -1.5 287,073 + +0.2 287,073 + +0.2 287,073 + -0.5 287,074 - +0.8 287,082 + -0.6 287,083 - -0.5 287,090 - EX31_RS05655 0.12 +0.6 287,167 - EX31_RS05655 0.43 -0.5 287,172 + EX31_RS05655 0.45 -1.0 287,172 + EX31_RS05655 0.45 -0.0 287,172 + EX31_RS05655 0.45 -0.3 287,172 + EX31_RS05655 0.45 +1.0 287,172 + EX31_RS05655 0.45 -1.2 287,172 + EX31_RS05655 0.45 +0.4 287,172 + EX31_RS05655 0.45 -1.6 287,172 + EX31_RS05655 0.45 +0.2 287,173 - EX31_RS05655 0.46 -0.0 287,173 - EX31_RS05655 0.46 -1.7 287,173 - EX31_RS05655 0.46 -0.1 287,173 - EX31_RS05655 0.46 -1.8 287,173 - EX31_RS05655 0.46 +0.4 287,174 + EX31_RS05655 0.46 -0.8 287,174 + EX31_RS05655 0.46 +0.0 287,174 + EX31_RS05655 0.46 -1.1 287,174 + EX31_RS05655 0.46 -0.3 287,174 + EX31_RS05655 0.46 +1.1 287,174 + EX31_RS05655 0.46 -0.7 287,174 + EX31_RS05655 0.46 +0.4 287,174 + EX31_RS05655 0.46 +1.5 287,174 + EX31_RS05655 0.46 +0.7 287,174 + EX31_RS05655 0.46 -0.2 287,174 + EX31_RS05655 0.46 +0.2 287,175 - EX31_RS05655 0.47 -0.6 287,175 - EX31_RS05655 0.47 +0.0 287,175 - EX31_RS05655 0.47 +1.6 287,175 - EX31_RS05655 0.47 -0.4 287,175 - EX31_RS05655 0.47 +0.3 287,175 - EX31_RS05655 0.47 +0.0 287,194 + EX31_RS05655 0.54 -0.5 287,194 + EX31_RS05655 0.54 +0.0 287,194 + EX31_RS05655 0.54 -0.5 287,195 - EX31_RS05655 0.55 +0.4 287,195 - EX31_RS05655 0.55 +0.6 287,195 - EX31_RS05655 0.55 -0.1 287,195 - EX31_RS05655 0.55 +1.1 287,195 - EX31_RS05655 0.55 +0.2 287,209 + EX31_RS05655 0.60 -0.3 287,210 - EX31_RS05655 0.61 -1.8 287,210 - EX31_RS05655 0.61 +0.3 287,265 + EX31_RS05655 0.83 +0.3 287,265 + EX31_RS05655 0.83 -0.7 287,265 + EX31_RS05655 0.83 -0.1 287,266 - EX31_RS05655 0.83 -0.4 287,266 - EX31_RS05655 0.83 -0.4 287,266 - EX31_RS05655 0.83 -0.1 287,287 - -0.2 287,345 - -0.0 287,360 + -0.4 287,442 - -1.4 287,442 - +0.8 287,448 + -0.6 287,509 - -0.1 287,553 + +0.4 287,649 + -0.1 287,649 + -0.6 287,650 - -0.2 287,650 - +0.0 287,652 + -1.8 287,652 + +0.3 287,652 + +0.9 287,652 + -0.3 287,652 + -0.2 287,652 + -1.5 287,652 + -0.6 287,652 + +0.2 287,652 + -0.7 287,652 + +0.8 287,652 + -0.1 287,652 + -0.2 287,652 + -0.1 287,652 + +1.0 287,653 - -0.2 287,653 - -1.1 287,653 - +0.6 287,653 - -0.4 287,654 + +0.1 287,788 + EX31_RS05660 0.30 +1.4 287,789 - EX31_RS05660 0.30 +0.3 287,960 + -0.8 287,961 - +0.1 287,966 + +0.4 287,966 + +0.7 287,967 - +0.1 287,967 - +0.2 288,094 + -0.9 288,095 - +0.3 288,095 - -0.6 288,176 + +0.2 288,238 - EX31_RS05665 0.17 -0.4 288,238 - EX31_RS05665 0.17 -0.2 288,299 + EX31_RS05665 0.27 +0.1 288,300 - EX31_RS05665 0.27 +0.5 288,373 + EX31_RS05665 0.39 -0.5 288,507 + EX31_RS05665 0.60 +0.5 288,508 - EX31_RS05665 0.60 -0.5 288,529 + EX31_RS05665 0.63 +0.0 288,529 + EX31_RS05665 0.63 +0.3 288,529 + EX31_RS05665 0.63 +0.1 288,529 + EX31_RS05665 0.63 -0.5 288,529 + EX31_RS05665 0.63 +0.4 288,530 - EX31_RS05665 0.63 +1.6 288,530 - EX31_RS05665 0.63 -0.2 288,530 - EX31_RS05665 0.63 +0.5 288,530 - EX31_RS05665 0.63 +0.2 288,530 - EX31_RS05665 0.63 +0.4 288,530 - EX31_RS05665 0.63 +0.9 288,530 - EX31_RS05665 0.63 -0.2 288,530 - EX31_RS05665 0.63 -0.3 288,530 - EX31_RS05665 0.63 -0.9 288,530 - EX31_RS05665 0.63 -0.3 288,580 + EX31_RS05665 0.71 +0.2 288,580 + EX31_RS05665 0.71 -0.1 288,580 + EX31_RS05665 0.71 -0.7 288,866 - EX31_RS05670 0.19 +0.2 288,891 + EX31_RS05670 0.24 -0.1 288,892 - EX31_RS05670 0.25 +0.4 288,892 - EX31_RS05670 0.25 -0.3 288,892 - EX31_RS05670 0.25 -0.5 288,965 + EX31_RS05670 0.41 -0.6 288,965 + EX31_RS05670 0.41 +0.0 288,965 + EX31_RS05670 0.41 -0.8 288,965 + EX31_RS05670 0.41 +0.1 288,965 + EX31_RS05670 0.41 +0.2 288,965 + EX31_RS05670 0.41 -1.7 288,965 + EX31_RS05670 0.41 +0.6 288,965 + EX31_RS05670 0.41 -0.3 288,965 + EX31_RS05670 0.41 +0.2 288,965 + EX31_RS05670 0.41 -0.2 288,965 + EX31_RS05670 0.41 -0.7 288,965 + EX31_RS05670 0.41 +0.2 288,965 + EX31_RS05670 0.41 +0.6 288,965 + EX31_RS05670 0.41 +0.0 288,965 + EX31_RS05670 0.41 +0.1 288,966 - EX31_RS05670 0.41 -0.2 288,966 - EX31_RS05670 0.41 +0.8 288,966 - EX31_RS05670 0.41 +0.2 288,966 - EX31_RS05670 0.41 -0.2 288,966 - EX31_RS05670 0.41 +0.7 288,966 - EX31_RS05670 0.41 +0.1 288,966 - EX31_RS05670 0.41 +1.0 288,966 - EX31_RS05670 0.41 +0.2 288,966 - EX31_RS05670 0.41 +0.8 288,966 - EX31_RS05670 0.41 -0.4 288,966 - EX31_RS05670 0.41 -0.5 288,966 - EX31_RS05670 0.41 -0.9 288,966 - EX31_RS05670 0.41 +0.2 288,966 - EX31_RS05670 0.41 +0.1
Or see this region's nucleotide sequence