Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03335 and EX31_RS03340 are separated by 79 nucleotides EX31_RS03340 and EX31_RS03345 are separated by 103 nucleotides EX31_RS03345 and EX31_RS03350 are separated by 22 nucleotides EX31_RS03350 and EX31_RS03355 are separated by 9 nucleotides
EX31_RS03335: EX31_RS03335 - DNA-binding transcriptional repressor, at 155,997 to 156,770
_RS03335
EX31_RS03340: EX31_RS03340 - transcriptional regulator GutM, at 156,850 to 157,212
_RS03340
EX31_RS03345: EX31_RS03345 - sorbitol-6-phosphate dehydrogenase, at 157,316 to 158,095
_RS03345
EX31_RS03350: EX31_RS03350 - PTS glucitol/sorbitol transporter subunit IIA, at 158,118 to 158,480
_RS03350
EX31_RS03355: EX31_RS03355 - PTS glucitol/sorbitol transporter subunit IIB, at 158,490 to 159,479
_RS03355
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1
2 at 156.360 kb on - strand, within EX31_RS03335 at 156.428 kb on + strand, within EX31_RS03335 at 156.428 kb on + strand, within EX31_RS03335 at 156.429 kb on - strand, within EX31_RS03335 at 156.429 kb on - strand, within EX31_RS03335 at 156.429 kb on - strand, within EX31_RS03335 at 156.429 kb on - strand, within EX31_RS03335 at 156.432 kb on - strand, within EX31_RS03335 at 156.516 kb on - strand, within EX31_RS03335 at 156.516 kb on - strand, within EX31_RS03335 at 156.552 kb on - strand, within EX31_RS03335 at 156.552 kb on - strand, within EX31_RS03335 at 156.614 kb on - strand, within EX31_RS03335 at 156.614 kb on - strand, within EX31_RS03335 at 156.625 kb on - strand, within EX31_RS03335 at 156.625 kb on - strand, within EX31_RS03335 at 156.762 kb on - strand at 156.762 kb on - strand at 156.828 kb on - strand at 156.878 kb on - strand at 157.135 kb on + strand, within EX31_RS03340 at 157.135 kb on + strand, within EX31_RS03340 at 157.136 kb on - strand, within EX31_RS03340 at 157.136 kb on - strand, within EX31_RS03340 at 157.189 kb on + strand at 157.190 kb on - strand at 157.190 kb on - strand at 157.192 kb on + strand at 157.192 kb on + strand at 157.192 kb on + strand at 157.193 kb on - strand at 157.193 kb on - strand at 157.193 kb on - strand at 157.193 kb on - strand at 157.224 kb on + strand at 157.241 kb on + strand at 157.255 kb on + strand at 157.256 kb on - strand at 157.256 kb on - strand at 157.256 kb on - strand at 157.258 kb on + strand at 157.258 kb on + strand at 157.258 kb on + strand at 157.259 kb on - strand at 157.259 kb on - strand at 157.259 kb on - strand at 157.298 kb on + strand at 157.299 kb on - strand at 157.299 kb on - strand at 157.312 kb on + strand at 157.312 kb on + strand at 157.312 kb on + strand at 157.313 kb on - strand at 157.313 kb on - strand at 157.313 kb on - strand at 157.342 kb on + strand at 157.343 kb on - strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.366 kb on - strand at 157.366 kb on - strand at 157.366 kb on - strand at 157.366 kb on - strand at 157.366 kb on - strand at 157.366 kb on - strand at 157.386 kb on + strand at 157.386 kb on + strand at 157.387 kb on - strand at 157.399 kb on + strand, within EX31_RS03345 at 157.400 kb on - strand, within EX31_RS03345 at 157.452 kb on + strand, within EX31_RS03345 at 157.452 kb on + strand, within EX31_RS03345 at 157.452 kb on + strand, within EX31_RS03345 at 157.453 kb on - strand, within EX31_RS03345 at 157.453 kb on - strand, within EX31_RS03345 at 157.453 kb on - strand, within EX31_RS03345 at 157.453 kb on - strand, within EX31_RS03345 at 157.453 kb on - strand, within EX31_RS03345 at 157.453 kb on - strand, within EX31_RS03345 at 157.453 kb on - strand, within EX31_RS03345 at 157.453 kb on - strand, within EX31_RS03345 at 157.456 kb on - strand, within EX31_RS03345 at 157.456 kb on - strand, within EX31_RS03345 at 157.508 kb on + strand, within EX31_RS03345 at 157.508 kb on + strand, within EX31_RS03345 at 157.508 kb on + strand, within EX31_RS03345 at 157.509 kb on - strand, within EX31_RS03345 at 157.509 kb on - strand, within EX31_RS03345 at 157.535 kb on + strand, within EX31_RS03345 at 157.565 kb on - strand, within EX31_RS03345 at 157.565 kb on - strand, within EX31_RS03345 at 157.565 kb on - strand, within EX31_RS03345 at 157.572 kb on + strand, within EX31_RS03345 at 157.645 kb on + strand, within EX31_RS03345 at 157.645 kb on + strand, within EX31_RS03345 at 157.645 kb on + strand, within EX31_RS03345 at 157.645 kb on + strand, within EX31_RS03345 at 157.645 kb on + strand, within EX31_RS03345 at 157.645 kb on + strand, within EX31_RS03345 at 157.645 kb on + strand, within EX31_RS03345 at 157.646 kb on - strand, within EX31_RS03345 at 157.646 kb on - strand, within EX31_RS03345 at 157.646 kb on - strand, within EX31_RS03345 at 157.702 kb on + strand, within EX31_RS03345 at 157.750 kb on - strand, within EX31_RS03345 at 157.837 kb on - strand, within EX31_RS03345 at 157.837 kb on - strand, within EX31_RS03345 at 157.892 kb on + strand, within EX31_RS03345 at 157.892 kb on + strand, within EX31_RS03345 at 157.892 kb on + strand, within EX31_RS03345 at 157.893 kb on - strand, within EX31_RS03345 at 157.893 kb on - strand, within EX31_RS03345 at 157.893 kb on - strand, within EX31_RS03345 at 158.095 kb on + strand at 158.096 kb on - strand at 158.096 kb on - strand at 158.115 kb on + strand at 158.120 kb on - strand at 158.153 kb on + strand at 158.175 kb on + strand, within EX31_RS03350 at 158.175 kb on + strand, within EX31_RS03350 at 158.175 kb on + strand, within EX31_RS03350 at 158.175 kb on + strand, within EX31_RS03350 at 158.176 kb on - strand, within EX31_RS03350 at 158.176 kb on - strand, within EX31_RS03350 at 158.176 kb on - strand, within EX31_RS03350 at 158.176 kb on - strand, within EX31_RS03350 at 158.176 kb on - strand, within EX31_RS03350 at 158.181 kb on + strand, within EX31_RS03350 at 158.181 kb on + strand, within EX31_RS03350 at 158.181 kb on + strand, within EX31_RS03350 at 158.181 kb on + strand, within EX31_RS03350 at 158.181 kb on + strand, within EX31_RS03350 at 158.182 kb on - strand, within EX31_RS03350 at 158.182 kb on - strand, within EX31_RS03350 at 158.182 kb on - strand, within EX31_RS03350 at 158.182 kb on - strand, within EX31_RS03350 at 158.182 kb on - strand, within EX31_RS03350 at 158.182 kb on - strand, within EX31_RS03350 at 158.231 kb on + strand, within EX31_RS03350 at 158.231 kb on + strand, within EX31_RS03350 at 158.232 kb on - strand, within EX31_RS03350 at 158.309 kb on + strand, within EX31_RS03350 at 158.311 kb on + strand, within EX31_RS03350 at 158.311 kb on + strand, within EX31_RS03350 at 158.311 kb on + strand, within EX31_RS03350 at 158.365 kb on + strand, within EX31_RS03350 at 158.365 kb on + strand, within EX31_RS03350 at 158.366 kb on - strand, within EX31_RS03350 at 158.453 kb on + strand at 158.457 kb on - strand at 158.457 kb on - strand at 158.457 kb on - strand at 158.468 kb on - strand at 158.468 kb on - strand at 158.468 kb on - strand at 158.497 kb on + strand at 158.529 kb on + strand at 158.529 kb on + strand at 158.529 kb on + strand at 158.529 kb on + strand at 158.529 kb on + strand at 158.530 kb on - strand at 158.877 kb on - strand, within EX31_RS03355 at 158.877 kb on - strand, within EX31_RS03355 at 158.909 kb on + strand, within EX31_RS03355 at 158.910 kb on - strand, within EX31_RS03355 at 158.910 kb on - strand, within EX31_RS03355 at 158.910 kb on - strand, within EX31_RS03355 at 159.038 kb on + strand, within EX31_RS03355 at 159.049 kb on + strand, within EX31_RS03355 at 159.094 kb on - strand, within EX31_RS03355
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 156,360 - EX31_RS03335 0.47 -0.1 156,428 + EX31_RS03335 0.56 +0.8 156,428 + EX31_RS03335 0.56 +0.1 156,429 - EX31_RS03335 0.56 -0.1 156,429 - EX31_RS03335 0.56 -0.1 156,429 - EX31_RS03335 0.56 +0.6 156,429 - EX31_RS03335 0.56 -0.4 156,432 - EX31_RS03335 0.56 -0.2 156,516 - EX31_RS03335 0.67 +0.1 156,516 - EX31_RS03335 0.67 -0.4 156,552 - EX31_RS03335 0.72 -0.4 156,552 - EX31_RS03335 0.72 +0.3 156,614 - EX31_RS03335 0.80 +0.7 156,614 - EX31_RS03335 0.80 -0.1 156,625 - EX31_RS03335 0.81 -0.2 156,625 - EX31_RS03335 0.81 -0.2 156,762 - -0.3 156,762 - -0.4 156,828 - -0.0 156,878 - -0.7 157,135 + EX31_RS03340 0.79 -0.6 157,135 + EX31_RS03340 0.79 -1.0 157,136 - EX31_RS03340 0.79 -0.4 157,136 - EX31_RS03340 0.79 -0.6 157,189 + -0.3 157,190 - +0.5 157,190 - -1.6 157,192 + -0.5 157,192 + -0.4 157,192 + +0.1 157,193 - -0.4 157,193 - +0.7 157,193 - +0.7 157,193 - +0.2 157,224 + +0.0 157,241 + +0.6 157,255 + -0.2 157,256 - -1.3 157,256 - -0.3 157,256 - -0.2 157,258 + +0.2 157,258 + -0.6 157,258 + +0.4 157,259 - +0.0 157,259 - +0.1 157,259 - +0.1 157,298 + +0.2 157,299 - +0.5 157,299 - +0.7 157,312 + -0.4 157,312 + +0.5 157,312 + -0.5 157,313 - +0.6 157,313 - -1.1 157,313 - +0.7 157,342 + +0.9 157,343 - +0.8 157,365 + -0.1 157,365 + -0.1 157,365 + +0.4 157,365 + -0.3 157,365 + -0.3 157,365 + -0.1 157,365 + -0.5 157,365 + -0.0 157,365 + +1.8 157,366 - +0.2 157,366 - +0.8 157,366 - -0.0 157,366 - +0.4 157,366 - -1.0 157,366 - +0.4 157,386 + -0.3 157,386 + -0.0 157,387 - -0.1 157,399 + EX31_RS03345 0.11 +0.0 157,400 - EX31_RS03345 0.11 +0.3 157,452 + EX31_RS03345 0.17 -0.0 157,452 + EX31_RS03345 0.17 -0.3 157,452 + EX31_RS03345 0.17 +0.2 157,453 - EX31_RS03345 0.18 -0.2 157,453 - EX31_RS03345 0.18 -0.4 157,453 - EX31_RS03345 0.18 -0.2 157,453 - EX31_RS03345 0.18 +0.3 157,453 - EX31_RS03345 0.18 +0.0 157,453 - EX31_RS03345 0.18 -0.3 157,453 - EX31_RS03345 0.18 +0.1 157,453 - EX31_RS03345 0.18 -0.2 157,456 - EX31_RS03345 0.18 -0.9 157,456 - EX31_RS03345 0.18 +0.0 157,508 + EX31_RS03345 0.25 +0.4 157,508 + EX31_RS03345 0.25 -1.0 157,508 + EX31_RS03345 0.25 +0.0 157,509 - EX31_RS03345 0.25 +0.6 157,509 - EX31_RS03345 0.25 -0.1 157,535 + EX31_RS03345 0.28 +0.3 157,565 - EX31_RS03345 0.32 +0.5 157,565 - EX31_RS03345 0.32 -0.3 157,565 - EX31_RS03345 0.32 -2.3 157,572 + EX31_RS03345 0.33 -0.5 157,645 + EX31_RS03345 0.42 +0.1 157,645 + EX31_RS03345 0.42 -2.0 157,645 + EX31_RS03345 0.42 +0.1 157,645 + EX31_RS03345 0.42 +0.3 157,645 + EX31_RS03345 0.42 +0.5 157,645 + EX31_RS03345 0.42 +0.6 157,645 + EX31_RS03345 0.42 -0.9 157,646 - EX31_RS03345 0.42 +0.5 157,646 - EX31_RS03345 0.42 -0.5 157,646 - EX31_RS03345 0.42 +0.4 157,702 + EX31_RS03345 0.49 +0.6 157,750 - EX31_RS03345 0.56 +0.6 157,837 - EX31_RS03345 0.67 -0.3 157,837 - EX31_RS03345 0.67 +0.9 157,892 + EX31_RS03345 0.74 +0.4 157,892 + EX31_RS03345 0.74 +1.3 157,892 + EX31_RS03345 0.74 -0.8 157,893 - EX31_RS03345 0.74 +0.1 157,893 - EX31_RS03345 0.74 -0.5 157,893 - EX31_RS03345 0.74 -1.0 158,095 + +0.9 158,096 - +0.2 158,096 - -0.4 158,115 + -0.8 158,120 - -0.8 158,153 + -0.4 158,175 + EX31_RS03350 0.16 -0.7 158,175 + EX31_RS03350 0.16 -0.0 158,175 + EX31_RS03350 0.16 +0.9 158,175 + EX31_RS03350 0.16 +0.5 158,176 - EX31_RS03350 0.16 -0.0 158,176 - EX31_RS03350 0.16 -0.3 158,176 - EX31_RS03350 0.16 +0.1 158,176 - EX31_RS03350 0.16 +1.3 158,176 - EX31_RS03350 0.16 +0.5 158,181 + EX31_RS03350 0.17 +0.7 158,181 + EX31_RS03350 0.17 -0.5 158,181 + EX31_RS03350 0.17 +1.0 158,181 + EX31_RS03350 0.17 -0.1 158,181 + EX31_RS03350 0.17 +0.7 158,182 - EX31_RS03350 0.18 +0.3 158,182 - EX31_RS03350 0.18 -0.1 158,182 - EX31_RS03350 0.18 +0.0 158,182 - EX31_RS03350 0.18 +0.4 158,182 - EX31_RS03350 0.18 -0.3 158,182 - EX31_RS03350 0.18 -1.5 158,231 + EX31_RS03350 0.31 -0.0 158,231 + EX31_RS03350 0.31 +0.8 158,232 - EX31_RS03350 0.31 -0.4 158,309 + EX31_RS03350 0.53 +0.5 158,311 + EX31_RS03350 0.53 -0.5 158,311 + EX31_RS03350 0.53 -0.0 158,311 + EX31_RS03350 0.53 -1.2 158,365 + EX31_RS03350 0.68 -0.2 158,365 + EX31_RS03350 0.68 +0.3 158,366 - EX31_RS03350 0.68 -0.6 158,453 + +0.1 158,457 - +0.0 158,457 - -1.6 158,457 - +0.7 158,468 - +0.1 158,468 - +0.8 158,468 - +0.3 158,497 + +0.1 158,529 + -0.9 158,529 + +0.3 158,529 + -0.3 158,529 + -0.8 158,529 + +0.2 158,530 - -1.0 158,877 - EX31_RS03355 0.39 -0.1 158,877 - EX31_RS03355 0.39 +0.2 158,909 + EX31_RS03355 0.42 +0.8 158,910 - EX31_RS03355 0.42 -0.1 158,910 - EX31_RS03355 0.42 -0.3 158,910 - EX31_RS03355 0.42 -0.4 159,038 + EX31_RS03355 0.55 -0.4 159,049 + EX31_RS03355 0.56 -0.4 159,094 - EX31_RS03355 0.61 -0.3
Or see this region's nucleotide sequence