Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03330 and EX31_RS03335 are separated by 213 nucleotides EX31_RS03335 and EX31_RS03340 are separated by 79 nucleotides EX31_RS03340 and EX31_RS03345 are separated by 103 nucleotides
EX31_RS03330: EX31_RS03330 - hypoxanthine phosphoribosyltransferase, at 155,247 to 155,783
_RS03330
EX31_RS03335: EX31_RS03335 - DNA-binding transcriptional repressor, at 155,997 to 156,770
_RS03335
EX31_RS03340: EX31_RS03340 - transcriptional regulator GutM, at 156,850 to 157,212
_RS03340
EX31_RS03345: EX31_RS03345 - sorbitol-6-phosphate dehydrogenase, at 157,316 to 158,095
_RS03345
Position (kb) 155
156
157 Strain fitness (log2 ratio) -2
-1
0
1
2 at 155.089 kb on - strand at 155.092 kb on + strand at 155.093 kb on - strand at 155.180 kb on - strand at 155.194 kb on + strand at 155.194 kb on + strand at 155.279 kb on - strand at 155.357 kb on - strand, within EX31_RS03330 at 155.367 kb on + strand, within EX31_RS03330 at 155.639 kb on + strand, within EX31_RS03330 at 155.640 kb on - strand, within EX31_RS03330 at 155.640 kb on - strand, within EX31_RS03330 at 155.793 kb on - strand at 155.816 kb on - strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.860 kb on + strand at 155.860 kb on + strand at 155.861 kb on - strand at 155.861 kb on - strand at 155.861 kb on - strand at 155.861 kb on - strand at 155.861 kb on - strand at 155.863 kb on - strand at 155.884 kb on + strand at 155.935 kb on - strand at 155.935 kb on - strand at 155.938 kb on + strand at 155.938 kb on + strand at 155.938 kb on + strand at 155.978 kb on + strand at 155.979 kb on - strand at 155.979 kb on - strand at 155.982 kb on + strand at 155.983 kb on - strand at 155.983 kb on - strand at 155.983 kb on - strand at 155.983 kb on - strand at 155.991 kb on - strand at 155.991 kb on - strand at 156.023 kb on + strand at 156.024 kb on - strand at 156.106 kb on - strand, within EX31_RS03335 at 156.168 kb on - strand, within EX31_RS03335 at 156.360 kb on - strand, within EX31_RS03335 at 156.428 kb on + strand, within EX31_RS03335 at 156.428 kb on + strand, within EX31_RS03335 at 156.429 kb on - strand, within EX31_RS03335 at 156.429 kb on - strand, within EX31_RS03335 at 156.429 kb on - strand, within EX31_RS03335 at 156.429 kb on - strand, within EX31_RS03335 at 156.432 kb on - strand, within EX31_RS03335 at 156.516 kb on - strand, within EX31_RS03335 at 156.516 kb on - strand, within EX31_RS03335 at 156.552 kb on - strand, within EX31_RS03335 at 156.552 kb on - strand, within EX31_RS03335 at 156.614 kb on - strand, within EX31_RS03335 at 156.614 kb on - strand, within EX31_RS03335 at 156.625 kb on - strand, within EX31_RS03335 at 156.625 kb on - strand, within EX31_RS03335 at 156.762 kb on - strand at 156.762 kb on - strand at 156.828 kb on - strand at 156.878 kb on - strand at 157.135 kb on + strand, within EX31_RS03340 at 157.135 kb on + strand, within EX31_RS03340 at 157.136 kb on - strand, within EX31_RS03340 at 157.136 kb on - strand, within EX31_RS03340 at 157.189 kb on + strand at 157.190 kb on - strand at 157.190 kb on - strand at 157.192 kb on + strand at 157.192 kb on + strand at 157.192 kb on + strand at 157.193 kb on - strand at 157.193 kb on - strand at 157.193 kb on - strand at 157.193 kb on - strand at 157.224 kb on + strand at 157.241 kb on + strand at 157.255 kb on + strand at 157.256 kb on - strand at 157.256 kb on - strand at 157.256 kb on - strand at 157.258 kb on + strand at 157.258 kb on + strand at 157.258 kb on + strand at 157.259 kb on - strand at 157.259 kb on - strand at 157.259 kb on - strand at 157.298 kb on + strand at 157.299 kb on - strand at 157.299 kb on - strand at 157.312 kb on + strand at 157.312 kb on + strand at 157.312 kb on + strand at 157.313 kb on - strand at 157.313 kb on - strand at 157.313 kb on - strand at 157.342 kb on + strand at 157.343 kb on - strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.366 kb on - strand at 157.366 kb on - strand at 157.366 kb on - strand at 157.366 kb on - strand at 157.366 kb on - strand at 157.366 kb on - strand at 157.386 kb on + strand at 157.386 kb on + strand at 157.387 kb on - strand at 157.399 kb on + strand, within EX31_RS03345 at 157.400 kb on - strand, within EX31_RS03345 at 157.452 kb on + strand, within EX31_RS03345 at 157.452 kb on + strand, within EX31_RS03345 at 157.452 kb on + strand, within EX31_RS03345 at 157.453 kb on - strand, within EX31_RS03345 at 157.453 kb on - strand, within EX31_RS03345 at 157.453 kb on - strand, within EX31_RS03345 at 157.453 kb on - strand, within EX31_RS03345 at 157.453 kb on - strand, within EX31_RS03345 at 157.453 kb on - strand, within EX31_RS03345 at 157.453 kb on - strand, within EX31_RS03345 at 157.453 kb on - strand, within EX31_RS03345 at 157.456 kb on - strand, within EX31_RS03345 at 157.456 kb on - strand, within EX31_RS03345 at 157.508 kb on + strand, within EX31_RS03345 at 157.508 kb on + strand, within EX31_RS03345 at 157.508 kb on + strand, within EX31_RS03345 at 157.509 kb on - strand, within EX31_RS03345 at 157.509 kb on - strand, within EX31_RS03345 at 157.535 kb on + strand, within EX31_RS03345 at 157.565 kb on - strand, within EX31_RS03345 at 157.565 kb on - strand, within EX31_RS03345 at 157.565 kb on - strand, within EX31_RS03345 at 157.572 kb on + strand, within EX31_RS03345 at 157.645 kb on + strand, within EX31_RS03345 at 157.645 kb on + strand, within EX31_RS03345 at 157.645 kb on + strand, within EX31_RS03345 at 157.645 kb on + strand, within EX31_RS03345 at 157.645 kb on + strand, within EX31_RS03345 at 157.645 kb on + strand, within EX31_RS03345 at 157.645 kb on + strand, within EX31_RS03345 at 157.646 kb on - strand, within EX31_RS03345 at 157.646 kb on - strand, within EX31_RS03345 at 157.646 kb on - strand, within EX31_RS03345 at 157.702 kb on + strand, within EX31_RS03345 at 157.750 kb on - strand, within EX31_RS03345
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 155,089 - -1.7 155,092 + +1.0 155,093 - +0.5 155,180 - -1.9 155,194 + -0.2 155,194 + -1.3 155,279 - -0.4 155,357 - EX31_RS03330 0.20 -0.7 155,367 + EX31_RS03330 0.22 -1.1 155,639 + EX31_RS03330 0.73 -1.0 155,640 - EX31_RS03330 0.73 -0.7 155,640 - EX31_RS03330 0.73 +1.3 155,793 - +0.1 155,816 - -0.5 155,847 + -0.3 155,847 + +0.8 155,847 + +0.7 155,848 - +0.0 155,848 - -0.0 155,848 - +0.5 155,848 - -0.4 155,848 - +0.7 155,848 - +0.6 155,848 - +0.6 155,848 - -0.3 155,848 - +0.2 155,848 - -0.6 155,848 - -0.3 155,848 - -0.7 155,860 + -0.2 155,860 + +0.9 155,861 - +0.1 155,861 - -2.0 155,861 - -0.0 155,861 - +1.0 155,861 - -1.7 155,863 - -0.2 155,884 + -0.3 155,935 - -0.2 155,935 - +0.0 155,938 + -1.0 155,938 + +0.6 155,938 + +0.8 155,978 + -0.8 155,979 - -0.3 155,979 - +0.1 155,982 + -0.9 155,983 - +0.2 155,983 - +0.3 155,983 - -1.1 155,983 - -0.2 155,991 - +0.5 155,991 - -0.7 156,023 + -0.2 156,024 - -0.5 156,106 - EX31_RS03335 0.14 -0.0 156,168 - EX31_RS03335 0.22 +0.2 156,360 - EX31_RS03335 0.47 -0.1 156,428 + EX31_RS03335 0.56 +0.8 156,428 + EX31_RS03335 0.56 +0.1 156,429 - EX31_RS03335 0.56 -0.1 156,429 - EX31_RS03335 0.56 -0.1 156,429 - EX31_RS03335 0.56 +0.6 156,429 - EX31_RS03335 0.56 -0.4 156,432 - EX31_RS03335 0.56 -0.2 156,516 - EX31_RS03335 0.67 +0.1 156,516 - EX31_RS03335 0.67 -0.4 156,552 - EX31_RS03335 0.72 -0.4 156,552 - EX31_RS03335 0.72 +0.3 156,614 - EX31_RS03335 0.80 +0.7 156,614 - EX31_RS03335 0.80 -0.1 156,625 - EX31_RS03335 0.81 -0.2 156,625 - EX31_RS03335 0.81 -0.2 156,762 - -0.3 156,762 - -0.4 156,828 - -0.0 156,878 - -0.7 157,135 + EX31_RS03340 0.79 -0.6 157,135 + EX31_RS03340 0.79 -1.0 157,136 - EX31_RS03340 0.79 -0.4 157,136 - EX31_RS03340 0.79 -0.6 157,189 + -0.3 157,190 - +0.5 157,190 - -1.6 157,192 + -0.5 157,192 + -0.4 157,192 + +0.1 157,193 - -0.4 157,193 - +0.7 157,193 - +0.7 157,193 - +0.2 157,224 + +0.0 157,241 + +0.6 157,255 + -0.2 157,256 - -1.3 157,256 - -0.3 157,256 - -0.2 157,258 + +0.2 157,258 + -0.6 157,258 + +0.4 157,259 - +0.0 157,259 - +0.1 157,259 - +0.1 157,298 + +0.2 157,299 - +0.5 157,299 - +0.7 157,312 + -0.4 157,312 + +0.5 157,312 + -0.5 157,313 - +0.6 157,313 - -1.1 157,313 - +0.7 157,342 + +0.9 157,343 - +0.8 157,365 + -0.1 157,365 + -0.1 157,365 + +0.4 157,365 + -0.3 157,365 + -0.3 157,365 + -0.1 157,365 + -0.5 157,365 + -0.0 157,365 + +1.8 157,366 - +0.2 157,366 - +0.8 157,366 - -0.0 157,366 - +0.4 157,366 - -1.0 157,366 - +0.4 157,386 + -0.3 157,386 + -0.0 157,387 - -0.1 157,399 + EX31_RS03345 0.11 +0.0 157,400 - EX31_RS03345 0.11 +0.3 157,452 + EX31_RS03345 0.17 -0.0 157,452 + EX31_RS03345 0.17 -0.3 157,452 + EX31_RS03345 0.17 +0.2 157,453 - EX31_RS03345 0.18 -0.2 157,453 - EX31_RS03345 0.18 -0.4 157,453 - EX31_RS03345 0.18 -0.2 157,453 - EX31_RS03345 0.18 +0.3 157,453 - EX31_RS03345 0.18 +0.0 157,453 - EX31_RS03345 0.18 -0.3 157,453 - EX31_RS03345 0.18 +0.1 157,453 - EX31_RS03345 0.18 -0.2 157,456 - EX31_RS03345 0.18 -0.9 157,456 - EX31_RS03345 0.18 +0.0 157,508 + EX31_RS03345 0.25 +0.4 157,508 + EX31_RS03345 0.25 -1.0 157,508 + EX31_RS03345 0.25 +0.0 157,509 - EX31_RS03345 0.25 +0.6 157,509 - EX31_RS03345 0.25 -0.1 157,535 + EX31_RS03345 0.28 +0.3 157,565 - EX31_RS03345 0.32 +0.5 157,565 - EX31_RS03345 0.32 -0.3 157,565 - EX31_RS03345 0.32 -2.3 157,572 + EX31_RS03345 0.33 -0.5 157,645 + EX31_RS03345 0.42 +0.1 157,645 + EX31_RS03345 0.42 -2.0 157,645 + EX31_RS03345 0.42 +0.1 157,645 + EX31_RS03345 0.42 +0.3 157,645 + EX31_RS03345 0.42 +0.5 157,645 + EX31_RS03345 0.42 +0.6 157,645 + EX31_RS03345 0.42 -0.9 157,646 - EX31_RS03345 0.42 +0.5 157,646 - EX31_RS03345 0.42 -0.5 157,646 - EX31_RS03345 0.42 +0.4 157,702 + EX31_RS03345 0.49 +0.6 157,750 - EX31_RS03345 0.56 +0.6
Or see this region's nucleotide sequence